Wall clock time and date at job start Mon Mar 30 2020 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30835 * 125.89667 * 2 1 4 4 N 1.40082 * 108.20703 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.04215 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92599 * 359.75581 * 4 3 2 7 7 C 1.35323 * 107.74187 * 0.38945 * 6 4 3 8 8 C 1.50697 * 126.03924 * 179.87212 * 7 6 4 9 9 N 1.46899 * 109.47092 * 103.46245 * 8 7 6 10 10 C 1.46899 * 111.00032 * 291.94578 * 9 8 7 11 11 C 1.46897 * 111.00095 * 167.99739 * 9 8 7 12 12 C 1.53003 * 109.47114 * 200.56459 * 11 9 8 13 13 C 1.50698 * 115.55131 * 57.38169 * 12 11 9 14 14 H 1.08009 * 119.99720 * 244.53609 * 13 12 11 15 15 C 1.37872 * 120.00266 * 64.53650 * 13 12 11 16 16 N 1.31515 * 119.99996 * 8.73859 * 15 13 12 17 17 Si 1.86802 * 119.99973 * 188.74379 * 15 13 12 18 18 H 1.48497 * 109.47007 * 179.97438 * 17 15 13 19 19 H 1.48490 * 109.47146 * 299.99795 * 17 15 13 20 20 H 1.48504 * 109.47002 * 59.99976 * 17 15 13 21 21 C 1.52998 * 117.49639 * 203.05300 * 12 11 9 22 22 C 1.53000 * 117.49486 * 271.70905 * 12 11 9 23 23 H 1.09003 * 109.46913 * 274.65465 * 1 2 3 24 24 H 1.08993 * 109.47375 * 34.65632 * 1 2 3 25 25 H 1.09002 * 109.46999 * 154.65797 * 1 2 3 26 26 H 1.08997 * 109.47494 * 89.96908 * 5 4 3 27 27 H 1.08994 * 109.47265 * 209.97648 * 5 4 3 28 28 H 1.09011 * 109.46600 * 329.97182 * 5 4 3 29 29 H 1.07997 * 126.12869 * 180.24256 * 6 4 3 30 30 H 1.09003 * 109.46969 * 343.46499 * 8 7 6 31 31 H 1.09003 * 109.47175 * 223.46382 * 8 7 6 32 32 H 1.08998 * 109.47351 * 300.08384 * 10 9 8 33 33 H 1.09004 * 109.47139 * 60.07801 * 10 9 8 34 34 H 1.09001 * 109.47157 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.47606 * 80.55567 * 11 9 8 36 36 H 1.09005 * 109.46693 * 320.56087 * 11 9 8 37 37 H 0.96997 * 119.99679 * 356.74817 * 16 15 13 38 38 H 1.09000 * 117.49663 * 215.00068 * 21 12 11 39 39 H 1.08995 * 117.50132 * 0.02562 * 21 12 11 40 40 H 1.09000 * 117.50192 * 359.97438 * 22 12 11 41 41 H 1.09005 * 117.49749 * 144.97252 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 3.6143 -0.7153 0.0045 7 6 2.3271 -1.1330 -0.0005 8 6 1.8600 -2.5657 -0.0002 9 7 1.3956 -2.9291 1.3452 10 6 2.5153 -2.9703 2.2953 11 6 0.6746 -4.2088 1.3256 12 6 -0.2134 -4.3130 2.5672 13 6 -1.2193 -3.2045 2.7418 14 1 -1.1440 -2.5350 3.5860 15 6 -2.2356 -3.0450 1.8239 16 7 -2.4324 -3.9558 0.8958 17 14 -3.3331 -1.5353 1.8986 18 1 -4.3404 -1.6012 0.8095 19 1 -4.0253 -1.4909 3.2116 20 1 -2.5057 -0.3132 1.7336 21 6 -0.6182 -5.7138 3.0306 22 6 0.4079 -4.9089 3.8320 23 1 -0.3633 0.0834 1.0243 24 1 -0.3634 0.8453 -0.5843 25 1 -0.3633 -0.9288 -0.4399 26 1 5.0828 1.7156 1.0274 27 1 5.6093 0.9985 -0.5142 28 1 4.5563 2.4336 -0.5139 29 1 4.4892 -1.3484 0.0092 30 1 2.6853 -3.2170 -0.2880 31 1 1.0413 -2.6811 -0.7106 32 1 3.2452 -3.7092 1.9648 33 1 2.9877 -1.9891 2.3429 34 1 2.1436 -3.2421 3.2833 35 1 1.3916 -5.0298 1.3216 36 1 0.0552 -4.2631 0.4303 37 1 -1.8336 -4.7158 0.8275 38 1 -1.6121 -5.8336 3.4618 39 1 -0.2516 -6.5611 2.4513 40 1 1.4491 -5.2271 3.7795 41 1 0.0895 -4.4988 4.7905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716389846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:15 Heat of formation + Delta-G solvation = 89.266101 kcal Electronic energy + Delta-G solvation = -20712.126378 eV Core-core repulsion = 17822.042369 eV Total energy + Delta-G solvation = -2890.084008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15399 -39.38730 -36.90437 -34.70140 -33.86786 -31.79013 -30.36608 -28.42909 -27.94694 -26.75773 -25.59079 -23.06901 -22.99027 -21.56269 -21.02439 -20.27392 -18.42607 -17.40395 -16.68602 -16.14045 -15.94206 -15.82447 -15.57335 -15.18580 -14.72029 -14.43838 -14.29886 -14.08411 -13.94875 -13.58165 -13.22529 -12.98622 -12.91916 -12.82399 -12.57896 -12.46393 -12.37301 -12.29299 -12.09857 -11.86684 -11.42748 -11.08359 -10.62948 -10.24419 -10.08296 -9.97342 -9.25724 -8.79734 -8.32335 -5.98582 0.97168 1.59501 1.66335 1.73762 1.79405 1.84294 2.69195 3.16679 3.45094 3.58420 3.69417 3.94638 4.19139 4.26269 4.29489 4.40330 4.45034 4.47112 4.51634 4.60720 4.63660 4.67612 4.70676 4.76569 4.81579 4.87381 4.90807 5.00426 5.09904 5.12709 5.18051 5.19375 5.27934 5.50527 5.57496 5.77337 6.23269 6.31178 6.42219 6.52079 6.58698 6.83075 6.95094 7.74456 9.07494 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.007244 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.337153 B = 3864.307979 C = 4857.528453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.084 3.916 3 N -0.338 5.338 4 N -0.380 5.380 5 C 0.097 3.903 6 C 0.070 3.930 7 C -0.239 4.239 8 C 0.141 3.859 9 N -0.526 5.526 10 C 0.042 3.958 11 C 0.112 3.888 12 C 0.016 3.984 13 C -0.540 4.540 14 H 0.025 0.975 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 1.085 2.915 18 H -0.288 1.288 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.197 4.197 22 C -0.176 4.176 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.208 0.792 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.047 0.953 37 H 0.263 0.737 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.978 5.851 -2.922 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 N -0.162 5.162 4 N -0.162 5.162 5 C -0.043 4.043 6 C -0.078 4.078 7 C -0.251 4.251 8 C 0.013 3.987 9 N -0.249 5.249 10 C -0.106 4.106 11 C -0.016 4.016 12 C 0.015 3.985 13 C -0.578 4.578 14 H 0.044 0.956 15 C -0.204 4.204 16 N -0.573 5.573 17 Si 0.910 3.090 18 H -0.214 1.214 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.236 4.236 22 C -0.213 4.213 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.137 0.863 28 H 0.107 0.893 29 H 0.224 0.776 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.533 8.335 -3.478 17.111 hybrid contribution 1.425 -2.388 0.703 2.869 sum 15.959 5.947 -2.776 17.255 Atomic orbital electron populations 1.20043 0.87286 1.02435 1.02328 1.22259 0.96908 0.90848 0.98127 1.77193 0.87949 1.23153 1.27939 1.48681 1.05504 1.05365 1.56627 1.22172 0.82799 0.94926 1.04407 1.22711 0.99128 0.85148 1.00797 1.19942 0.92464 0.95597 1.17074 1.20174 0.97743 0.90669 0.90109 1.61552 1.25021 1.31385 1.06988 1.22238 0.91695 1.00164 0.96531 1.21420 0.93979 0.88175 0.98023 1.19175 0.96356 0.91492 0.91509 1.21194 1.12185 1.13802 1.10579 0.95643 1.26414 0.98514 1.02501 0.92986 1.70859 1.38488 1.11721 1.36240 0.83391 0.75207 0.74494 0.75891 1.21365 1.21233 1.19045 1.22867 0.97946 0.96801 1.05971 1.22778 0.96515 1.05690 0.96345 0.91945 0.90749 0.91525 0.89926 0.86346 0.89308 0.77582 0.93498 0.92622 0.95356 0.92210 0.92613 0.96480 0.93446 0.92652 0.92234 0.90260 0.89132 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.39 10.30 71.24 0.73 -1.65 16 2 C 0.08 3.08 7.22 43.10 0.31 3.39 16 3 N -0.34 -11.67 12.58 -47.39 -0.60 -12.27 16 4 N -0.38 -9.78 4.01 -369.55 -1.48 -11.26 16 5 C 0.10 1.35 11.47 127.77 1.47 2.82 16 6 C 0.07 1.74 10.96 83.54 0.92 2.66 16 7 C -0.24 -7.83 4.70 -20.14 -0.09 -7.92 16 8 C 0.14 4.89 5.08 85.56 0.43 5.33 16 9 N -0.53 -20.86 4.41 -927.04 -4.09 -24.95 16 10 C 0.04 1.41 9.15 127.69 1.17 2.58 16 11 C 0.11 4.89 4.64 86.30 0.40 5.29 16 12 C 0.02 0.75 0.82 -52.93 -0.04 0.71 16 13 C -0.54 -29.85 8.58 25.60 0.22 -29.63 16 14 H 0.03 1.47 7.83 -2.91 -0.02 1.45 16 15 C 0.00 -0.25 5.37 84.65 0.45 0.20 16 16 N -0.94 -55.02 13.36 21.45 0.29 -54.74 16 17 Si 1.08 51.28 29.91 68.60 2.05 53.33 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -11.74 6.70 99.48 0.67 -11.07 16 21 C -0.20 -8.98 9.55 30.62 0.29 -8.69 16 22 C -0.18 -7.42 8.47 30.62 0.26 -7.16 16 23 H 0.06 2.63 7.73 -2.39 -0.02 2.61 16 24 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.07 2.72 7.48 -2.39 -0.02 2.70 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.21 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.05 1.38 8.08 -2.39 -0.02 1.36 16 31 H 0.06 2.14 7.32 -2.39 -0.02 2.13 16 32 H 0.03 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.06 1.92 7.01 -2.39 -0.02 1.90 16 34 H 0.06 2.03 5.94 -2.39 -0.01 2.02 16 35 H 0.02 0.68 7.95 -2.39 -0.02 0.66 16 36 H 0.05 2.31 6.27 -2.38 -0.01 2.29 16 37 H 0.26 15.42 5.91 -92.71 -0.55 14.87 16 38 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.09 3.31 7.76 -2.39 -0.02 3.29 16 41 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 Total: -1.00 -68.27 333.96 3.86 -64.40 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.17 Total: 17.57 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 6.52 Total: -32.09 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -5.88 Total: -103.22 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Total: -68.27 3.86 -64.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716389846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.670 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds