Wall clock time and date at job start Mon Mar 30 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47486 * 2 1 4 4 N 1.46905 * 109.47232 * 120.00290 * 2 1 3 5 5 C 1.46897 * 111.00176 * 154.99673 * 4 2 1 6 6 C 1.50702 * 109.47133 * 180.02562 * 5 4 2 7 7 C 1.38338 * 120.44610 * 257.00681 * 6 5 4 8 8 C 1.38842 * 118.50013 * 180.02562 * 7 6 5 9 9 C 1.38061 * 119.33127 * 0.02562 * 8 7 6 10 10 N 1.31940 * 120.85221 * 359.97438 * 9 8 7 11 11 C 1.32424 * 121.62410 * 0.02562 * 10 9 8 12 12 N 1.39009 * 119.70218 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00007 * 295.37162 * 12 11 10 14 14 C 1.46896 * 111.00306 * 59.32765 * 12 11 10 15 15 C 1.50694 * 109.47323 * 169.99658 * 14 12 11 16 16 H 1.08002 * 120.00292 * 0.02562 * 15 14 12 17 17 C 1.37883 * 120.00177 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00018 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99840 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47277 * 60.00269 * 19 17 15 21 21 H 1.48504 * 109.46617 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47110 * 299.99799 * 19 17 15 23 23 H 1.09000 * 109.47183 * 300.00258 * 1 2 3 24 24 H 1.09004 * 109.47058 * 59.99593 * 1 2 3 25 25 H 1.09001 * 109.47571 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46763 * 239.99706 * 2 1 3 27 27 H 1.09004 * 109.47305 * 300.00256 * 3 2 1 28 28 H 1.09000 * 109.47120 * 59.99703 * 3 2 1 29 29 H 1.08996 * 109.47096 * 180.02562 * 3 2 1 30 30 H 1.00891 * 110.99703 * 278.95227 * 4 2 1 31 31 H 1.08996 * 109.47315 * 59.99774 * 5 4 2 32 32 H 1.09009 * 109.47096 * 299.99858 * 5 4 2 33 33 H 1.07994 * 120.75355 * 0.02562 * 7 6 5 34 34 H 1.08006 * 120.33127 * 180.02562 * 8 7 6 35 35 H 1.08001 * 119.57483 * 180.28147 * 9 8 7 36 36 H 1.09000 * 109.47175 * 65.68795 * 13 12 11 37 37 H 1.08999 * 109.47009 * 185.68067 * 13 12 11 38 38 H 1.08993 * 109.47304 * 305.68373 * 13 12 11 39 39 H 1.08997 * 109.47311 * 290.00275 * 14 12 11 40 40 H 1.09006 * 109.46665 * 49.99731 * 14 12 11 41 41 H 0.96993 * 120.00516 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.3670 -1.2356 0.9806 6 6 3.8345 -1.9377 2.2295 7 6 4.7465 -1.3315 3.0748 8 6 5.1500 -2.0151 4.2139 9 6 4.6339 -3.2702 4.4678 10 7 3.7651 -3.8240 3.6436 11 6 3.3558 -3.2043 2.5472 12 7 2.4394 -3.8254 1.7064 13 6 3.0120 -5.0388 1.1083 14 6 1.1916 -4.1285 2.4198 15 6 0.1428 -4.5705 1.4321 16 1 0.3796 -4.6215 0.3796 17 6 -1.1191 -4.9097 1.8719 18 7 -1.4077 -4.8471 3.1535 19 14 -2.4189 -5.4582 0.6475 20 1 -1.9479 -6.6740 -0.0631 21 1 -3.6804 -5.7645 1.3688 22 1 -2.6617 -4.3727 -0.3362 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4423 -0.0005 30 1 2.0020 -0.0817 2.0022 31 1 4.0523 -0.4222 0.7425 32 1 3.3430 -1.9446 0.1530 33 1 5.1359 -0.3488 2.8536 34 1 5.8604 -1.5694 4.8945 35 1 4.9415 -3.8035 5.3551 36 1 3.1970 -5.7764 1.8892 37 1 2.3131 -5.4491 0.3793 38 1 3.9506 -4.7914 0.6125 39 1 1.3701 -4.9257 3.1414 40 1 0.8458 -3.2364 2.9422 41 1 -2.2953 -5.0861 3.4631 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723150104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:29 Heat of formation + Delta-G solvation = 44.867408 kcal Electronic energy + Delta-G solvation = -20488.925736 eV Core-core repulsion = 17596.916455 eV Total energy + Delta-G solvation = -2892.009280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.06842 -37.00489 -36.03617 -33.12098 -32.47513 -30.77780 -29.22810 -27.08015 -26.87645 -25.35506 -24.67497 -22.83698 -21.35998 -20.50558 -20.37757 -16.74584 -16.25605 -15.99507 -15.37560 -15.19117 -14.66116 -14.36716 -13.85677 -13.64869 -13.46102 -13.11467 -12.89202 -12.59331 -12.53882 -12.11718 -12.06710 -11.89740 -11.68203 -11.23931 -10.94772 -10.89694 -10.85420 -10.65175 -10.49987 -10.40725 -9.93006 -9.43294 -9.27008 -8.94637 -8.33788 -8.30354 -7.86079 -7.37829 -5.89959 -3.89909 1.50477 1.64529 3.40315 3.44033 3.46739 4.11885 4.48365 4.64406 4.70794 4.96432 5.09786 5.13446 5.27507 5.31051 5.40400 5.45992 5.49998 5.59814 5.80124 5.85363 5.86956 6.01041 6.08328 6.15559 6.17650 6.26519 6.37606 6.41680 6.50691 6.59645 6.78028 6.81650 6.90671 7.44221 7.50187 7.57649 7.82282 7.92602 8.18764 8.27107 8.51177 8.70920 9.15210 9.71710 11.21167 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.007952 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.834678 B = 3520.064350 C = 5006.503246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 C -0.182 4.182 4 N -0.657 5.657 5 C 0.126 3.874 6 C -0.122 4.122 7 C -0.074 4.074 8 C -0.197 4.197 9 C 0.107 3.893 10 N -0.512 5.512 11 C 0.340 3.660 12 N -0.481 5.481 13 C 0.044 3.956 14 C 0.212 3.788 15 C -0.498 4.498 16 H 0.062 0.938 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.277 1.277 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.333 0.667 31 H 0.021 0.979 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.026 0.974 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.001 0.999 40 H 0.030 0.970 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.447 10.122 -2.946 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 C -0.241 4.241 4 N -0.287 5.287 5 C -0.003 4.003 6 C -0.126 4.126 7 C -0.101 4.101 8 C -0.218 4.218 9 C -0.052 4.052 10 N -0.224 5.224 11 C 0.111 3.889 12 N -0.205 5.205 13 C -0.104 4.104 14 C 0.089 3.911 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.202 1.202 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.150 0.850 31 H 0.039 0.961 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.019 0.981 40 H 0.048 0.952 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.497 8.966 -3.190 14.169 hybrid contribution 0.283 0.866 0.120 0.919 sum 10.781 9.832 -3.070 14.910 Atomic orbital electron populations 1.21749 0.94257 1.03463 1.00264 1.21488 0.96166 0.91089 0.93686 1.22567 1.00687 0.98883 1.01998 1.60397 1.23438 1.40019 1.04834 1.20541 0.88505 0.96269 0.95015 1.20525 0.98248 0.95431 0.98402 1.21357 0.95937 0.99138 0.93665 1.21920 1.03585 0.97182 0.99066 1.22531 0.92455 0.92690 0.97512 1.68043 1.11751 1.37843 1.04751 1.20250 0.90010 0.90709 0.87900 1.60500 1.03438 1.25886 1.30626 1.22178 0.98124 0.90969 0.99107 1.19637 0.82833 0.95872 0.92806 1.21045 0.95339 1.43426 0.93859 0.92022 1.24935 0.98338 0.96114 0.95090 1.69964 1.21171 1.49230 1.13429 0.86607 0.80838 0.79021 0.81160 1.20447 1.21537 1.20233 0.93178 0.93415 0.90660 0.90665 0.92453 0.92721 0.93278 0.84968 0.96076 0.89363 0.85639 0.85579 0.83709 0.95500 0.90257 0.94193 0.98116 0.95162 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.52 37.16 0.35 -1.72 16 2 C 0.09 1.19 3.20 -67.71 -0.22 0.97 16 3 C -0.18 -2.00 9.16 37.15 0.34 -1.66 16 4 N -0.66 -10.54 6.24 -107.99 -0.67 -11.21 16 5 C 0.13 1.91 5.23 -4.98 -0.03 1.89 16 6 C -0.12 -2.04 5.43 -104.27 -0.57 -2.61 16 7 C -0.07 -1.02 9.80 -39.32 -0.39 -1.41 16 8 C -0.20 -2.64 10.10 -39.42 -0.40 -3.04 16 9 C 0.11 1.71 11.17 -17.57 -0.20 1.51 16 10 N -0.51 -10.41 9.80 -12.44 -0.12 -10.53 16 11 C 0.34 6.93 5.25 -155.01 -0.81 6.12 16 12 N -0.48 -10.82 3.94 -182.44 -0.72 -11.54 16 13 C 0.04 0.90 9.17 60.07 0.55 1.45 16 14 C 0.21 5.77 4.45 -4.98 -0.02 5.75 16 15 C -0.50 -14.15 8.54 -34.44 -0.29 -14.44 16 16 H 0.06 1.72 7.10 -52.49 -0.37 1.34 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.08 1.06 7.80 -51.93 -0.40 0.65 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 30 H 0.33 5.09 8.46 -39.30 -0.33 4.76 16 31 H 0.02 0.27 7.31 -51.93 -0.38 -0.11 16 32 H 0.09 1.46 7.82 -51.92 -0.41 1.06 16 33 H 0.13 1.34 8.05 -52.49 -0.42 0.92 16 34 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.03 0.57 8.05 -51.93 -0.42 0.16 16 37 H 0.08 1.67 6.91 -51.93 -0.36 1.31 16 38 H 0.04 0.71 8.11 -51.93 -0.42 0.29 16 39 H 0.00 0.03 8.06 -51.93 -0.42 -0.39 16 40 H 0.03 0.91 8.06 -51.93 -0.42 0.49 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -31.66 338.91 -9.30 -40.95 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.83 Total: 2.58 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.77 Total: -5.67 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.78 Total: -59.95 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.66 -9.30 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723150104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.821 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds