Wall clock time and date at job start Mon Mar 30 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47486 * 2 1 4 4 N 1.46905 * 109.47232 * 120.00290 * 2 1 3 5 5 C 1.46897 * 111.00176 * 154.99673 * 4 2 1 6 6 C 1.50702 * 109.47133 * 180.02562 * 5 4 2 7 7 C 1.38338 * 120.44610 * 257.00681 * 6 5 4 8 8 C 1.38842 * 118.50013 * 180.02562 * 7 6 5 9 9 C 1.38061 * 119.33127 * 0.02562 * 8 7 6 10 10 N 1.31940 * 120.85221 * 359.97438 * 9 8 7 11 11 C 1.32424 * 121.62410 * 0.02562 * 10 9 8 12 12 N 1.39009 * 119.70218 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00007 * 295.37162 * 12 11 10 14 14 C 1.46896 * 111.00306 * 59.32765 * 12 11 10 15 15 C 1.50694 * 109.47323 * 169.99658 * 14 12 11 16 16 H 1.08002 * 120.00292 * 0.02562 * 15 14 12 17 17 C 1.37883 * 120.00177 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00018 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99840 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47277 * 60.00269 * 19 17 15 21 21 H 1.48504 * 109.46617 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47110 * 299.99799 * 19 17 15 23 23 H 1.09000 * 109.47183 * 300.00258 * 1 2 3 24 24 H 1.09004 * 109.47058 * 59.99593 * 1 2 3 25 25 H 1.09001 * 109.47571 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46763 * 239.99706 * 2 1 3 27 27 H 1.09004 * 109.47305 * 300.00256 * 3 2 1 28 28 H 1.09000 * 109.47120 * 59.99703 * 3 2 1 29 29 H 1.08996 * 109.47096 * 180.02562 * 3 2 1 30 30 H 1.00891 * 110.99703 * 278.95227 * 4 2 1 31 31 H 1.08996 * 109.47315 * 59.99774 * 5 4 2 32 32 H 1.09009 * 109.47096 * 299.99858 * 5 4 2 33 33 H 1.07994 * 120.75355 * 0.02562 * 7 6 5 34 34 H 1.08006 * 120.33127 * 180.02562 * 8 7 6 35 35 H 1.08001 * 119.57483 * 180.28147 * 9 8 7 36 36 H 1.09000 * 109.47175 * 65.68795 * 13 12 11 37 37 H 1.08999 * 109.47009 * 185.68067 * 13 12 11 38 38 H 1.08993 * 109.47304 * 305.68373 * 13 12 11 39 39 H 1.08997 * 109.47311 * 290.00275 * 14 12 11 40 40 H 1.09006 * 109.46665 * 49.99731 * 14 12 11 41 41 H 0.96993 * 120.00516 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.3670 -1.2356 0.9806 6 6 3.8345 -1.9377 2.2295 7 6 4.7465 -1.3315 3.0748 8 6 5.1500 -2.0151 4.2139 9 6 4.6339 -3.2702 4.4678 10 7 3.7651 -3.8240 3.6436 11 6 3.3558 -3.2043 2.5472 12 7 2.4394 -3.8254 1.7064 13 6 3.0120 -5.0388 1.1083 14 6 1.1916 -4.1285 2.4198 15 6 0.1428 -4.5705 1.4321 16 1 0.3796 -4.6215 0.3796 17 6 -1.1191 -4.9097 1.8719 18 7 -1.4077 -4.8471 3.1535 19 14 -2.4189 -5.4582 0.6475 20 1 -1.9479 -6.6740 -0.0631 21 1 -3.6804 -5.7645 1.3688 22 1 -2.6617 -4.3727 -0.3362 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4423 -0.0005 30 1 2.0020 -0.0817 2.0022 31 1 4.0523 -0.4222 0.7425 32 1 3.3430 -1.9446 0.1530 33 1 5.1359 -0.3488 2.8536 34 1 5.8604 -1.5694 4.8945 35 1 4.9415 -3.8035 5.3551 36 1 3.1970 -5.7764 1.8892 37 1 2.3131 -5.4491 0.3793 38 1 3.9506 -4.7914 0.6125 39 1 1.3701 -4.9257 3.1414 40 1 0.8458 -3.2364 2.9422 41 1 -2.2953 -5.0861 3.4631 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723150104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:28 Heat of formation + Delta-G solvation = 23.121675 kcal Electronic energy + Delta-G solvation = -20489.868701 eV Core-core repulsion = 17596.916455 eV Total energy + Delta-G solvation = -2892.952246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41274 -38.15272 -37.71451 -34.65102 -34.31965 -32.09658 -30.55717 -29.14415 -27.88995 -27.00429 -25.96595 -24.62859 -22.67962 -21.98872 -21.61273 -18.62248 -17.68996 -17.63865 -16.73519 -16.58992 -16.23286 -15.68924 -15.57081 -14.88784 -14.73134 -14.63216 -14.28760 -14.05931 -13.92049 -13.72602 -13.20853 -13.10557 -13.02568 -12.88474 -12.83056 -12.61158 -12.37913 -12.09008 -12.02890 -11.92699 -11.61037 -11.39042 -10.64575 -10.57258 -10.39885 -9.62705 -9.20762 -8.99276 -8.14676 -6.23883 0.23157 0.44380 1.41114 1.45616 1.52908 2.42982 2.84922 3.14572 3.20535 3.50832 3.70881 4.02677 4.07707 4.16430 4.18907 4.34353 4.36156 4.51874 4.58512 4.64135 4.70336 4.73631 4.84313 4.98819 5.01083 5.03014 5.07922 5.14997 5.21175 5.29018 5.31332 5.34365 5.39530 5.55084 5.66957 5.81079 6.13120 6.21793 6.37610 6.68750 6.83763 6.89159 7.19884 7.43951 8.97112 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.007952 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.834678 B = 3520.064350 C = 5006.503246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.086 3.914 3 C -0.169 4.169 4 N -0.686 5.686 5 C 0.133 3.867 6 C -0.125 4.125 7 C -0.065 4.065 8 C -0.173 4.173 9 C 0.087 3.913 10 N -0.558 5.558 11 C 0.293 3.707 12 N -0.477 5.477 13 C 0.050 3.950 14 C 0.244 3.756 15 C -0.511 4.511 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.267 1.267 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.335 0.665 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.008 0.992 37 H 0.069 0.931 38 H 0.069 0.931 39 H -0.044 1.044 40 H -0.010 1.010 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 12.350 -3.846 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 C -0.228 4.228 4 N -0.317 5.317 5 C 0.004 3.996 6 C -0.129 4.129 7 C -0.092 4.092 8 C -0.193 4.193 9 C -0.072 4.072 10 N -0.271 5.271 11 C 0.065 3.935 12 N -0.200 5.200 13 C -0.097 4.097 14 C 0.119 3.881 15 C -0.549 4.549 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.578 5.578 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.191 1.191 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.188 0.812 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.027 0.973 37 H 0.088 0.912 38 H 0.088 0.912 39 H -0.026 1.026 40 H 0.008 0.992 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.230 11.204 -4.107 17.087 hybrid contribution -0.118 0.220 0.511 0.569 sum 12.112 11.425 -3.596 17.034 Atomic orbital electron populations 1.21719 0.95549 1.00824 1.01300 1.21473 0.95093 0.93082 0.92657 1.22407 1.01327 0.96300 1.02774 1.60317 1.24483 1.41083 1.05834 1.20466 0.88831 0.96650 0.93627 1.20735 0.98649 0.93978 0.99570 1.21846 0.94190 1.00509 0.92618 1.22406 1.02371 0.95494 0.98983 1.23053 0.92038 0.94395 0.97666 1.67852 1.13698 1.39768 1.05752 1.20318 0.91837 0.92474 0.88911 1.60313 1.02867 1.25987 1.30796 1.22119 0.99030 0.90302 0.98268 1.18999 0.85318 0.92157 0.91652 1.21336 0.96072 1.43413 0.94087 0.91746 1.25901 1.00792 0.95901 0.97047 1.70123 1.21825 1.50180 1.15691 0.85447 0.77573 0.79021 0.78625 1.19184 1.21029 1.19144 0.93470 0.91021 0.95016 0.91121 0.91123 0.92467 0.92037 0.84708 0.92484 0.91447 0.81227 0.80933 0.81532 0.97315 0.91229 0.91230 1.02631 0.99211 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.52 71.98 0.69 -3.38 16 2 C 0.09 2.31 3.20 44.91 0.14 2.46 16 3 C -0.17 -3.22 9.16 71.98 0.66 -2.56 16 4 N -0.69 -21.81 6.24 -495.57 -3.09 -24.91 16 5 C 0.13 3.86 5.23 85.56 0.45 4.31 16 6 C -0.13 -4.05 5.43 -19.64 -0.11 -4.16 16 7 C -0.07 -1.55 9.80 22.44 0.22 -1.33 16 8 C -0.17 -3.98 10.10 22.37 0.23 -3.76 16 9 C 0.09 2.68 11.17 84.63 0.95 3.62 16 10 N -0.56 -23.37 9.80 -193.27 -1.89 -25.27 16 11 C 0.29 12.23 5.25 133.04 0.70 12.93 16 12 N -0.48 -22.56 3.94 -731.12 -2.88 -25.44 16 13 C 0.05 2.18 9.17 127.69 1.17 3.35 16 14 C 0.24 14.21 4.45 85.56 0.38 14.59 16 15 C -0.51 -30.40 8.54 25.60 0.22 -30.18 16 16 H 0.06 3.71 7.10 -2.91 -0.02 3.69 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.94 -59.61 13.29 21.45 0.28 -59.32 16 19 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.94 7.80 -2.38 -0.02 1.92 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 29 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 30 H 0.33 10.01 8.46 -89.70 -0.76 9.25 16 31 H 0.06 1.24 7.31 -2.39 -0.02 1.22 16 32 H 0.07 2.22 7.82 -2.38 -0.02 2.20 16 33 H 0.17 2.56 8.05 -2.91 -0.02 2.54 16 34 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.17 4.15 8.06 -2.91 -0.02 4.12 16 36 H 0.01 0.38 8.05 -2.39 -0.02 0.36 16 37 H 0.07 3.06 6.91 -2.39 -0.02 3.05 16 38 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16 39 H -0.04 -2.89 8.06 -2.39 -0.02 -2.91 16 40 H -0.01 -0.67 8.06 -2.38 -0.02 -0.69 16 41 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -74.63 338.91 0.84 -73.79 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.24 Total: 16.57 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 6.15 Total: -3.58 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -7.58 Total: -134.93 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.63 0.84 -73.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723150104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.917 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds