Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00114 * 2 1 4 4 C 1.50696 * 109.47261 * 180.02562 * 3 2 1 5 5 C 1.38352 * 120.45023 * 253.24394 * 4 3 2 6 6 C 1.38841 * 118.50288 * 180.26535 * 5 4 3 7 7 C 1.38066 * 119.32773 * 359.74567 * 6 5 4 8 8 N 1.31943 * 120.85564 * 359.97438 * 7 6 5 9 9 C 1.32421 * 121.62248 * 0.02562 * 8 7 6 10 10 N 1.39009 * 119.70506 * 179.97438 * 9 8 7 11 11 C 1.46903 * 111.00231 * 296.31621 * 10 9 8 12 12 C 1.50703 * 109.46891 * 290.95690 * 11 10 9 13 13 H 1.08002 * 119.99937 * 4.95269 * 12 11 10 14 14 C 1.37875 * 120.00076 * 184.95126 * 12 11 10 15 15 N 1.31516 * 119.99637 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00041 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47090 * 90.00064 * 16 14 12 18 18 H 1.48506 * 109.47135 * 209.99863 * 16 14 12 19 19 H 1.48500 * 109.47037 * 329.99907 * 16 14 12 20 20 C 1.46902 * 110.99622 * 60.26718 * 10 9 8 21 21 C 1.53003 * 109.47081 * 174.85525 * 20 10 9 22 22 C 1.52998 * 109.47349 * 54.85316 * 20 10 9 23 23 H 1.08998 * 109.46627 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46618 * 299.99749 * 1 2 3 25 25 H 1.08992 * 109.47279 * 59.99920 * 1 2 3 26 26 H 1.00897 * 111.00497 * 123.95270 * 2 1 3 27 27 H 1.09006 * 109.47052 * 60.00198 * 3 2 1 28 28 H 1.09004 * 109.46995 * 300.00082 * 3 2 1 29 29 H 1.07997 * 120.74426 * 359.97438 * 5 4 3 30 30 H 1.07997 * 120.33068 * 179.73085 * 6 5 4 31 31 H 1.08005 * 119.56670 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47257 * 50.95487 * 11 10 9 33 33 H 1.08999 * 109.47306 * 170.95472 * 11 10 9 34 34 H 0.97003 * 119.99873 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.47066 * 294.85375 * 20 10 9 36 36 H 1.08996 * 109.47204 * 307.51349 * 21 20 10 37 37 H 1.09003 * 109.47080 * 67.51280 * 21 20 10 38 38 H 1.08994 * 109.46866 * 187.51135 * 21 20 10 39 39 H 1.09001 * 109.47463 * 184.06283 * 22 20 10 40 40 H 1.09000 * 109.47373 * 304.06418 * 22 20 10 41 41 H 1.09002 * 109.46912 * 64.06519 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.2124 1.6561 1.1412 6 6 5.5993 1.6109 1.0938 7 6 6.2241 1.2409 -0.0805 8 7 5.5206 0.9308 -1.1528 9 6 4.1968 0.9618 -1.1475 10 7 3.4953 0.6278 -2.3002 11 6 3.7805 1.5777 -3.3839 12 6 3.1766 2.9173 -3.0495 13 1 2.7047 3.0727 -2.0905 14 6 3.2264 3.9445 -3.9678 15 7 3.8015 3.7554 -5.1354 16 14 2.4785 5.6052 -3.5530 17 1 3.5050 6.4635 -2.9089 18 1 1.9988 6.2570 -4.7983 19 1 1.3370 5.4154 -2.6223 20 6 3.7915 -0.7497 -2.7161 21 6 2.9083 -1.1235 -3.9082 22 6 3.5110 -1.7047 -1.5542 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8307 -0.5261 0.7813 27 1 1.6460 1.8948 0.8900 28 1 1.6460 1.8948 -0.8900 29 1 3.6999 1.9429 2.0475 30 1 6.1833 1.8629 1.9666 31 1 7.3028 1.2048 -0.1218 32 1 4.8591 1.6841 -3.4994 33 1 3.3504 1.2072 -4.3144 34 1 3.8369 4.4782 -5.7813 35 1 4.8403 -0.8249 -3.0032 36 1 1.8652 -0.9211 -3.6653 37 1 3.2005 -0.5326 -4.7763 38 1 3.0302 -2.1832 -4.1324 39 1 3.7987 -2.7170 -1.8382 40 1 4.0865 -1.3947 -0.6819 41 1 2.4479 -1.6829 -1.3145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723158304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = 51.089246 kcal Electronic energy + Delta-G solvation = -21190.164248 eV Core-core repulsion = 18298.424767 eV Total energy + Delta-G solvation = -2891.739481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08094 -36.78019 -35.76760 -32.84334 -32.00704 -31.61763 -29.51175 -27.15065 -26.23777 -25.84978 -23.42061 -22.89959 -21.73203 -21.03717 -19.28559 -16.61255 -16.55996 -15.67809 -15.59357 -15.08670 -14.66104 -14.27834 -13.85200 -13.79764 -13.56980 -13.13697 -12.71569 -12.47870 -12.15109 -11.87231 -11.84712 -11.57107 -11.43040 -11.36621 -11.32270 -10.89071 -10.83254 -10.61927 -10.36705 -10.13583 -9.77579 -9.24941 -9.15669 -8.94460 -8.37854 -8.10679 -7.98039 -7.32744 -5.98148 -3.98130 1.69887 1.82405 3.32469 3.38544 3.41273 4.29290 4.42649 4.68469 4.74706 5.08301 5.22371 5.38514 5.44404 5.46982 5.60771 5.68707 5.69081 5.77178 5.78742 5.93822 6.03958 6.14070 6.17638 6.24960 6.46374 6.49379 6.52932 6.58450 6.61770 6.73021 6.93590 7.02353 7.08994 7.31514 7.41779 7.56151 7.70294 7.84549 8.16249 8.42721 8.56407 8.68363 9.07618 9.64157 11.12703 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.008376 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.546595 B = 3342.205538 C = 3496.532691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.669 5.669 3 C 0.117 3.883 4 C -0.117 4.117 5 C -0.077 4.077 6 C -0.201 4.201 7 C 0.107 3.893 8 N -0.515 5.515 9 C 0.373 3.627 10 N -0.474 5.474 11 C 0.192 3.808 12 C -0.503 4.503 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.283 1.283 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.090 3.910 21 C -0.138 4.138 22 C -0.139 4.139 23 H 0.061 0.939 24 H 0.011 0.989 25 H 0.068 0.932 26 H 0.328 0.672 27 H 0.021 0.979 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.002 0.998 33 H 0.045 0.955 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 -7.997 11.673 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.298 5.298 3 C -0.011 4.011 4 C -0.121 4.121 5 C -0.104 4.104 6 C -0.222 4.222 7 C -0.051 4.051 8 N -0.227 5.227 9 C 0.144 3.856 10 N -0.199 5.199 11 C 0.068 3.932 12 C -0.542 4.542 13 H 0.078 0.922 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.209 1.209 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.018 4.018 21 C -0.196 4.196 22 C -0.197 4.197 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.039 0.961 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.160 0.840 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.963 -8.193 10.107 13.158 hybrid contribution 0.051 1.676 1.663 2.362 sum -1.912 -6.518 11.770 13.589 Atomic orbital electron populations 1.22146 0.88271 1.01113 1.00199 1.60355 1.06755 1.14063 1.48590 1.20709 0.89626 0.89555 1.01249 1.20427 0.96570 1.01972 0.93178 1.21332 0.94120 0.97475 0.97448 1.21844 0.95093 1.05437 0.99787 1.22423 0.99595 0.94787 0.88333 1.67893 1.09468 1.15910 1.29471 1.19682 0.85715 0.88627 0.91622 1.60499 1.52420 1.02461 1.04481 1.19912 0.95634 0.89429 0.88193 1.21145 1.36435 0.95301 1.01309 0.92185 1.24921 0.95701 0.98717 0.95018 1.69954 1.44340 1.32648 1.06614 0.86595 0.79433 0.84225 0.77747 1.20917 1.21223 1.19851 1.21404 0.97139 0.88243 0.94987 1.21808 1.00815 0.99348 0.97590 1.21893 1.03694 0.96789 0.97280 0.92039 0.97035 0.91290 0.85548 0.96135 0.87787 0.85894 0.85841 0.83992 0.98012 0.93717 0.93009 0.94652 0.91726 0.92339 0.93519 0.94175 0.94302 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 60.06 0.64 1.04 16 2 N -0.67 -9.58 4.96 -122.42 -0.61 -10.19 16 3 C 0.12 1.96 5.35 -4.98 -0.03 1.93 16 4 C -0.12 -2.13 5.18 -104.27 -0.54 -2.67 16 5 C -0.08 -1.19 9.80 -39.32 -0.39 -1.58 16 6 C -0.20 -3.01 10.10 -39.42 -0.40 -3.40 16 7 C 0.11 1.85 11.17 -17.57 -0.20 1.65 16 8 N -0.52 -10.86 9.48 -12.44 -0.12 -10.97 16 9 C 0.37 7.78 2.91 -155.01 -0.45 7.33 16 10 N -0.47 -10.36 3.64 -167.00 -0.61 -10.97 16 11 C 0.19 5.08 4.54 -4.97 -0.02 5.06 16 12 C -0.50 -14.15 8.82 -34.44 -0.30 -14.45 16 13 H 0.06 1.66 5.84 -52.49 -0.31 1.36 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.09 1.74 2.49 -67.71 -0.17 1.58 16 21 C -0.14 -2.48 8.81 37.16 0.33 -2.15 16 22 C -0.14 -2.29 8.74 37.16 0.32 -1.96 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.33 4.20 8.81 -39.29 -0.35 3.86 16 27 H 0.02 0.30 7.98 -51.93 -0.41 -0.11 16 28 H 0.10 2.10 6.49 -51.93 -0.34 1.76 16 29 H 0.12 1.53 8.04 -52.49 -0.42 1.10 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.00 0.06 7.68 -51.93 -0.40 -0.34 16 33 H 0.04 1.25 5.92 -51.93 -0.31 0.94 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.04 0.75 7.98 -51.93 -0.41 0.34 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.15 6.56 -51.93 -0.34 0.81 16 38 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.67 6.94 -51.93 -0.36 0.31 16 41 H 0.08 1.34 6.54 -51.93 -0.34 1.00 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -30.98 328.37 -8.47 -39.45 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.50 Total: 3.07 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.30 Total: -6.08 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.60 Total: -58.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.98 -8.47 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723158304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.543 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds