Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00114 * 2 1 4 4 C 1.50696 * 109.47261 * 180.02562 * 3 2 1 5 5 C 1.38352 * 120.45023 * 253.24394 * 4 3 2 6 6 C 1.38841 * 118.50288 * 180.26535 * 5 4 3 7 7 C 1.38066 * 119.32773 * 359.74567 * 6 5 4 8 8 N 1.31943 * 120.85564 * 359.97438 * 7 6 5 9 9 C 1.32421 * 121.62248 * 0.02562 * 8 7 6 10 10 N 1.39009 * 119.70506 * 179.97438 * 9 8 7 11 11 C 1.46903 * 111.00231 * 296.31621 * 10 9 8 12 12 C 1.50703 * 109.46891 * 290.95690 * 11 10 9 13 13 H 1.08002 * 119.99937 * 4.95269 * 12 11 10 14 14 C 1.37875 * 120.00076 * 184.95126 * 12 11 10 15 15 N 1.31516 * 119.99637 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00041 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47090 * 90.00064 * 16 14 12 18 18 H 1.48506 * 109.47135 * 209.99863 * 16 14 12 19 19 H 1.48500 * 109.47037 * 329.99907 * 16 14 12 20 20 C 1.46902 * 110.99622 * 60.26718 * 10 9 8 21 21 C 1.53003 * 109.47081 * 174.85525 * 20 10 9 22 22 C 1.52998 * 109.47349 * 54.85316 * 20 10 9 23 23 H 1.08998 * 109.46627 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46618 * 299.99749 * 1 2 3 25 25 H 1.08992 * 109.47279 * 59.99920 * 1 2 3 26 26 H 1.00897 * 111.00497 * 123.95270 * 2 1 3 27 27 H 1.09006 * 109.47052 * 60.00198 * 3 2 1 28 28 H 1.09004 * 109.46995 * 300.00082 * 3 2 1 29 29 H 1.07997 * 120.74426 * 359.97438 * 5 4 3 30 30 H 1.07997 * 120.33068 * 179.73085 * 6 5 4 31 31 H 1.08005 * 119.56670 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47257 * 50.95487 * 11 10 9 33 33 H 1.08999 * 109.47306 * 170.95472 * 11 10 9 34 34 H 0.97003 * 119.99873 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.47066 * 294.85375 * 20 10 9 36 36 H 1.08996 * 109.47204 * 307.51349 * 21 20 10 37 37 H 1.09003 * 109.47080 * 67.51280 * 21 20 10 38 38 H 1.08994 * 109.46866 * 187.51135 * 21 20 10 39 39 H 1.09001 * 109.47463 * 184.06283 * 22 20 10 40 40 H 1.09000 * 109.47373 * 304.06418 * 22 20 10 41 41 H 1.09002 * 109.46912 * 64.06519 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.2124 1.6561 1.1412 6 6 5.5993 1.6109 1.0938 7 6 6.2241 1.2409 -0.0805 8 7 5.5206 0.9308 -1.1528 9 6 4.1968 0.9618 -1.1475 10 7 3.4953 0.6278 -2.3002 11 6 3.7805 1.5777 -3.3839 12 6 3.1766 2.9173 -3.0495 13 1 2.7047 3.0727 -2.0905 14 6 3.2264 3.9445 -3.9678 15 7 3.8015 3.7554 -5.1354 16 14 2.4785 5.6052 -3.5530 17 1 3.5050 6.4635 -2.9089 18 1 1.9988 6.2570 -4.7983 19 1 1.3370 5.4154 -2.6223 20 6 3.7915 -0.7497 -2.7161 21 6 2.9083 -1.1235 -3.9082 22 6 3.5110 -1.7047 -1.5542 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8307 -0.5261 0.7813 27 1 1.6460 1.8948 0.8900 28 1 1.6460 1.8948 -0.8900 29 1 3.6999 1.9429 2.0475 30 1 6.1833 1.8629 1.9666 31 1 7.3028 1.2048 -0.1218 32 1 4.8591 1.6841 -3.4994 33 1 3.3504 1.2072 -4.3144 34 1 3.8369 4.4782 -5.7813 35 1 4.8403 -0.8249 -3.0032 36 1 1.8652 -0.9211 -3.6653 37 1 3.2005 -0.5326 -4.7763 38 1 3.0302 -2.1832 -4.1324 39 1 3.7987 -2.7170 -1.8382 40 1 4.0865 -1.3947 -0.6819 41 1 2.4479 -1.6829 -1.3145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723158304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = 30.089011 kcal Electronic energy + Delta-G solvation = -21191.074886 eV Core-core repulsion = 18298.424767 eV Total energy + Delta-G solvation = -2892.650120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50350 -38.33975 -36.94885 -34.93985 -33.32804 -33.12379 -31.12245 -28.75001 -27.77194 -27.32991 -24.69924 -24.44942 -23.46237 -22.36669 -20.82911 -18.56504 -17.99673 -17.27247 -16.96868 -16.72041 -16.16602 -15.77036 -15.35536 -15.12488 -14.92731 -14.39907 -14.34159 -13.99052 -13.73061 -13.43801 -13.34877 -13.01160 -12.95275 -12.82334 -12.73408 -12.53317 -12.42296 -12.18833 -11.97471 -11.87622 -11.53180 -11.27079 -10.63215 -10.54743 -10.32420 -9.47304 -9.13921 -9.03668 -8.18000 -6.26162 0.35433 0.52627 1.36483 1.38037 1.49022 2.38542 2.94330 3.11905 3.18885 3.58799 3.78106 4.06764 4.15977 4.22301 4.26126 4.32507 4.48681 4.58719 4.63561 4.67686 4.77318 4.82089 4.88130 5.00304 5.06532 5.09719 5.15060 5.18637 5.27593 5.31880 5.36844 5.42251 5.49696 5.61834 5.72044 5.83035 6.08181 6.20273 6.52227 6.69611 6.78930 6.93215 7.29397 7.41560 8.93468 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.008376 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.546595 B = 3342.205538 C = 3496.532691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.677 5.677 3 C 0.127 3.873 4 C -0.128 4.128 5 C -0.073 4.073 6 C -0.182 4.182 7 C 0.086 3.914 8 N -0.558 5.558 9 C 0.336 3.664 10 N -0.467 5.467 11 C 0.213 3.787 12 C -0.511 4.511 13 H 0.063 0.937 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.961 3.039 17 H -0.279 1.279 18 H -0.281 1.281 19 H -0.260 1.260 20 C 0.084 3.916 21 C -0.129 4.129 22 C -0.120 4.120 23 H 0.080 0.920 24 H 0.027 0.973 25 H 0.048 0.952 26 H 0.341 0.659 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.165 0.835 32 H -0.044 1.044 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.008 0.992 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -7.950 14.938 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.308 5.308 3 C -0.003 4.003 4 C -0.132 4.132 5 C -0.099 4.099 6 C -0.201 4.201 7 C -0.072 4.072 8 N -0.271 5.271 9 C 0.108 3.892 10 N -0.190 5.190 11 C 0.088 3.912 12 C -0.549 4.549 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.576 5.576 16 Si 0.786 3.214 17 H -0.205 1.205 18 H -0.206 1.206 19 H -0.184 1.184 20 C -0.023 4.023 21 C -0.187 4.187 22 C -0.177 4.177 23 H 0.099 0.901 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.158 0.842 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.181 0.819 30 H 0.186 0.814 31 H 0.182 0.818 32 H -0.027 1.027 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.830 -8.170 13.401 15.948 hybrid contribution 0.413 1.601 0.723 1.804 sum -2.418 -6.569 14.124 15.763 Atomic orbital electron populations 1.22135 0.86986 1.02295 0.99921 1.60234 1.07997 1.13005 1.49551 1.20488 0.88844 0.90682 1.00245 1.20665 0.97432 1.01806 0.93309 1.21800 0.94489 0.95874 0.97767 1.22301 0.95320 1.02478 1.00044 1.22954 1.00744 0.94997 0.88488 1.67764 1.10105 1.17406 1.31854 1.19765 0.86085 0.91453 0.91942 1.60427 1.52722 1.02390 1.03492 1.19429 0.92163 0.90496 0.89131 1.21427 1.36026 0.96102 1.01355 0.91937 1.25848 0.96137 1.02803 0.94811 1.70102 1.45756 1.33942 1.07752 0.85500 0.78886 0.79130 0.77866 1.20473 1.20633 1.18393 1.21548 0.95777 0.88181 0.96842 1.21735 1.00145 1.00857 0.95953 1.21719 1.03883 0.96729 0.95373 0.90123 0.95456 0.93313 0.84169 0.93749 0.91971 0.81911 0.81434 0.81827 1.02671 0.96274 0.92923 0.97438 0.91930 0.95190 0.90237 0.91987 0.95140 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.70 127.69 1.37 2.18 16 2 N -0.68 -18.22 4.96 -541.23 -2.68 -20.91 16 3 C 0.13 4.05 5.35 85.56 0.46 4.51 16 4 C -0.13 -4.49 5.18 -19.63 -0.10 -4.59 16 5 C -0.07 -2.00 9.80 22.44 0.22 -1.78 16 6 C -0.18 -4.79 10.10 22.37 0.23 -4.56 16 7 C 0.09 2.87 11.17 84.64 0.95 3.82 16 8 N -0.56 -24.06 9.48 -193.26 -1.83 -25.90 16 9 C 0.34 14.24 2.91 133.04 0.39 14.63 16 10 N -0.47 -21.29 3.64 -682.25 -2.49 -23.77 16 11 C 0.21 12.03 4.54 85.56 0.39 12.42 16 12 C -0.51 -29.80 8.82 25.60 0.23 -29.58 16 13 H 0.06 3.55 5.84 -2.91 -0.02 3.53 16 14 C 0.00 0.09 5.46 84.65 0.46 0.55 16 15 N -0.93 -58.33 13.29 21.45 0.28 -58.05 16 16 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 C 0.08 3.38 2.49 44.92 0.11 3.50 16 21 C -0.13 -4.80 8.81 71.98 0.63 -4.17 16 22 C -0.12 -3.84 8.74 71.98 0.63 -3.21 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.34 7.79 8.81 -89.70 -0.79 7.00 16 27 H 0.04 1.18 7.98 -2.38 -0.02 1.17 16 28 H 0.06 2.53 6.49 -2.38 -0.02 2.51 16 29 H 0.16 3.14 8.04 -2.91 -0.02 3.12 16 30 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 31 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 32 H -0.04 -2.86 7.68 -2.39 -0.02 -2.88 16 33 H 0.02 1.16 5.92 -2.39 -0.01 1.15 16 34 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.01 0.34 7.98 -2.39 -0.02 0.32 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.03 1.25 6.56 -2.39 -0.02 1.23 16 38 H 0.08 2.37 8.13 -2.39 -0.02 2.35 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.03 1.02 6.94 -2.39 -0.02 1.00 16 41 H 0.09 2.77 6.54 -2.39 -0.02 2.75 16 Total: -1.00 -71.81 328.37 1.49 -70.32 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.22 Total: 17.02 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 5.95 Total: -6.29 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -6.72 Total: -128.62 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.81 1.49 -70.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723158304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.410 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds