Wall clock time and date at job start Mon Mar 30 2020 04:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47142 * 2 1 4 4 C 1.50699 * 109.46969 * 119.99256 * 2 1 3 5 5 H 1.08002 * 120.00000 * 120.00667 * 4 2 1 6 6 C 1.37884 * 120.00427 * 300.00301 * 4 2 1 7 7 N 1.31516 * 119.99463 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47160 * 90.00402 * 8 6 4 10 10 H 1.48504 * 109.47041 * 210.00237 * 8 6 4 11 11 H 1.48498 * 109.47250 * 329.99946 * 8 6 4 12 12 N 1.46499 * 109.47458 * 239.99524 * 2 1 3 13 13 N 1.40105 * 119.99713 * 90.27596 * 12 2 1 14 14 C 1.29676 * 119.99672 * 179.72035 * 13 12 2 15 15 C 1.47631 * 119.99853 * 179.97438 * 14 13 12 16 16 C 1.36825 * 126.94655 * 179.71362 * 15 14 13 17 17 N 1.35241 * 105.99314 * 179.91533 * 16 15 14 18 18 C 1.46507 * 125.72338 * 180.13243 * 17 16 15 19 19 C 1.53777 * 113.61413 * 14.37664 * 18 17 16 20 20 C 1.53955 * 87.02010 * 220.04872 * 19 18 17 21 21 C 1.53781 * 113.61081 * 276.77196 * 18 17 16 22 22 N 1.28633 * 108.54983 * 0.36072 * 17 16 15 23 23 N 1.28604 * 110.57823 * 359.76978 * 22 17 16 24 24 H 1.09003 * 109.46606 * 60.00756 * 1 2 3 25 25 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47205 * 300.00580 * 1 2 3 27 27 H 0.96998 * 119.99568 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99790 * 269.99499 * 12 2 1 29 29 H 1.08002 * 119.99878 * 0.02562 * 14 13 12 30 30 H 1.07996 * 127.00196 * 359.97438 * 16 15 14 31 31 H 1.08998 * 112.84675 * 145.57855 * 18 17 16 32 32 H 1.08997 * 113.61708 * 334.57254 * 19 18 17 33 33 H 1.09001 * 113.61133 * 105.47104 * 19 18 17 34 34 H 1.09001 * 113.53870 * 270.81251 * 20 19 18 35 35 H 1.09005 * 113.74213 * 139.94534 * 20 19 18 36 36 H 1.09007 * 113.61008 * 254.52722 * 21 18 17 37 37 H 1.08997 * 113.61723 * 25.43156 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4829 7 7 0.9426 0.8299 2.6033 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4126 10 1 1.3429 -0.9489 5.1122 11 1 2.4857 -2.5659 3.7123 12 7 2.0184 -0.6907 -1.1961 13 7 2.2575 0.0308 -2.3730 14 6 2.6949 -0.5797 -3.4302 15 6 2.9463 0.1804 -4.6705 16 6 3.4100 -0.3147 -5.8588 17 7 3.4800 0.7415 -6.7006 18 6 3.9234 0.6952 -8.0962 19 6 3.9907 -0.7283 -8.6742 20 6 5.2925 -0.2964 -9.3733 21 6 5.4515 0.7516 -8.2592 22 7 3.0967 1.7944 -6.0689 23 7 2.7712 1.5025 -4.8594 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7080 1.1611 3.4843 28 1 2.1802 -1.6468 -1.1719 29 1 2.8746 -1.6443 -3.4034 30 1 3.6666 -1.3401 -6.0798 31 1 3.3899 1.4005 -8.7334 32 1 4.1362 -1.5000 -7.9184 33 1 3.1788 -0.9581 -9.3643 34 1 5.1333 0.1368 -10.3608 35 1 6.0688 -1.0616 -9.3670 36 1 5.8173 1.7149 -8.6149 37 1 5.9972 0.3852 -7.3897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853324077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:19 Heat of formation + Delta-G solvation = 161.302087 kcal Electronic energy + Delta-G solvation = -18600.134184 eV Core-core repulsion = 15609.633547 eV Total energy + Delta-G solvation = -2990.500637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.144 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.02079 -39.19146 -36.42622 -34.18434 -32.96840 -31.69932 -30.39511 -27.37310 -26.33099 -26.14239 -25.19061 -23.35751 -22.17309 -20.46771 -20.12864 -19.75327 -17.83387 -16.65377 -16.41022 -15.73543 -15.71371 -15.08747 -14.58359 -14.44985 -13.62569 -13.25283 -13.06353 -12.86655 -12.49661 -12.42906 -12.12597 -11.62208 -11.48811 -11.26462 -11.10176 -11.00513 -10.87659 -10.61499 -10.52204 -10.20569 -10.18822 -9.83474 -9.46072 -9.17038 -8.92513 -8.46413 -6.83832 -6.09464 -4.17896 1.58567 2.29795 2.32842 3.27146 3.33138 3.35308 3.66464 3.68595 3.83185 3.88921 4.16111 4.21624 4.39413 4.54018 4.85673 4.98671 5.05717 5.15546 5.22745 5.28485 5.29436 5.35976 5.37575 5.65853 5.77404 6.05069 6.37311 6.68095 6.77210 6.98564 7.07258 7.21340 7.62552 7.83168 7.91046 8.18704 8.34233 8.75197 8.89526 9.37956 9.48592 10.96537 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.048745 B = 0.002989 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.285865 B = 9364.624103 C = 9569.661983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.296 3.704 3 H 0.044 0.956 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.620 5.620 13 N -0.166 5.166 14 C 0.011 3.989 15 C 0.064 3.936 16 C -0.053 4.053 17 N -0.284 5.284 18 C 0.117 3.883 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.144 4.144 22 N -0.094 5.094 23 N -0.244 5.244 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.090 0.910 27 H 0.264 0.736 28 H 0.368 0.632 29 H 0.114 0.886 30 H 0.188 0.812 31 H 0.132 0.868 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.532 -5.403 -23.505 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.194 3.806 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.357 5.357 13 N 0.019 4.981 14 C -0.199 4.199 15 C -0.074 4.074 16 C -0.206 4.206 17 N -0.078 5.078 18 C 0.015 3.985 19 C -0.182 4.182 20 C -0.174 4.174 21 C -0.183 4.183 22 N -0.073 5.073 23 N -0.112 5.112 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.204 0.796 29 H 0.131 0.869 30 H 0.205 0.795 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.834 -2.746 -22.894 24.050 hybrid contribution 0.748 -2.834 0.629 2.998 sum 7.582 -5.580 -22.265 24.174 Atomic orbital electron populations 1.22198 0.98926 0.99152 1.00682 1.18568 0.90225 0.93712 0.78098 0.93823 1.21233 1.32251 1.13282 0.90211 0.92195 1.24869 0.94850 0.95025 0.98947 1.69900 1.35921 1.22544 1.23898 0.86420 0.78592 0.79803 0.82108 1.20551 1.21041 1.19907 1.49139 1.71906 1.07716 1.06984 1.74078 1.02541 1.27626 0.93806 1.22232 1.11734 0.95595 0.90338 1.19938 1.03589 0.90587 0.93333 1.23223 1.10976 0.95664 0.90785 1.47213 1.42994 1.06045 1.11543 1.23401 0.96907 1.00819 0.77328 1.23456 0.99394 0.94850 1.00541 1.22746 0.97578 0.99052 0.98055 1.23416 0.93812 1.01121 0.99970 1.78220 1.16023 1.11510 1.01548 1.75556 1.16353 1.13026 1.06270 0.96700 0.95555 0.89138 0.92555 0.79597 0.86870 0.79459 0.85031 0.88417 0.89535 0.89168 0.89893 0.89731 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.29 37.16 0.35 -3.50 16 2 C 0.30 7.83 3.23 -69.08 -0.22 7.61 16 3 H 0.04 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.53 -14.53 8.74 -34.44 -0.30 -14.83 16 5 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.62 -14.25 6.10 -5.88 -0.04 -14.28 16 13 N -0.17 -3.68 11.47 32.18 0.37 -3.32 16 14 C 0.01 0.20 11.01 -14.63 -0.16 0.04 16 15 C 0.06 1.08 7.11 -83.29 -0.59 0.49 16 16 C -0.05 -0.65 10.77 -16.56 -0.18 -0.82 16 17 N -0.28 -3.44 3.53 -53.60 -0.19 -3.63 16 18 C 0.12 0.85 4.94 -67.12 -0.33 0.52 16 19 C -0.14 -0.66 7.45 -25.83 -0.19 -0.85 16 20 C -0.14 -0.49 8.09 -25.83 -0.21 -0.70 16 21 C -0.14 -0.84 7.88 -25.92 -0.20 -1.05 16 22 N -0.09 -1.56 13.13 60.35 0.79 -0.77 16 23 N -0.24 -4.75 12.44 32.96 0.41 -4.34 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.37 7.60 8.58 -182.59 -1.57 6.03 16 29 H 0.11 1.63 8.02 -52.49 -0.42 1.21 16 30 H 0.19 1.42 6.73 -52.49 -0.35 1.07 16 31 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.42 6.32 -51.93 -0.33 0.09 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 317.75 15.07 4.79 4.79 Total: -1.00 -33.16 317.75 -6.73 -39.89 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.33 Total: 1.60 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.14 Total: -11.36 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 1.97 Total: -50.96 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.16 -6.73 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853324077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.196 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds