Wall clock time and date at job start Mon Mar 30 2020 04:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47142 * 2 1 4 4 C 1.50699 * 109.46969 * 119.99256 * 2 1 3 5 5 H 1.08002 * 120.00000 * 120.00667 * 4 2 1 6 6 C 1.37884 * 120.00427 * 300.00301 * 4 2 1 7 7 N 1.31516 * 119.99463 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47160 * 90.00402 * 8 6 4 10 10 H 1.48504 * 109.47041 * 210.00237 * 8 6 4 11 11 H 1.48498 * 109.47250 * 329.99946 * 8 6 4 12 12 N 1.46499 * 109.47458 * 239.99524 * 2 1 3 13 13 N 1.40105 * 119.99713 * 90.27596 * 12 2 1 14 14 C 1.29676 * 119.99672 * 179.72035 * 13 12 2 15 15 C 1.47631 * 119.99853 * 179.97438 * 14 13 12 16 16 C 1.36825 * 126.94655 * 179.71362 * 15 14 13 17 17 N 1.35241 * 105.99314 * 179.91533 * 16 15 14 18 18 C 1.46507 * 125.72338 * 180.13243 * 17 16 15 19 19 C 1.53777 * 113.61413 * 14.37664 * 18 17 16 20 20 C 1.53955 * 87.02010 * 220.04872 * 19 18 17 21 21 C 1.53781 * 113.61081 * 276.77196 * 18 17 16 22 22 N 1.28633 * 108.54983 * 0.36072 * 17 16 15 23 23 N 1.28604 * 110.57823 * 359.76978 * 22 17 16 24 24 H 1.09003 * 109.46606 * 60.00756 * 1 2 3 25 25 H 1.08998 * 109.46704 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47205 * 300.00580 * 1 2 3 27 27 H 0.96998 * 119.99568 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99790 * 269.99499 * 12 2 1 29 29 H 1.08002 * 119.99878 * 0.02562 * 14 13 12 30 30 H 1.07996 * 127.00196 * 359.97438 * 16 15 14 31 31 H 1.08998 * 112.84675 * 145.57855 * 18 17 16 32 32 H 1.08997 * 113.61708 * 334.57254 * 19 18 17 33 33 H 1.09001 * 113.61133 * 105.47104 * 19 18 17 34 34 H 1.09001 * 113.53870 * 270.81251 * 20 19 18 35 35 H 1.09005 * 113.74213 * 139.94534 * 20 19 18 36 36 H 1.09007 * 113.61008 * 254.52722 * 21 18 17 37 37 H 1.08997 * 113.61723 * 25.43156 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4829 7 7 0.9426 0.8299 2.6033 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4126 10 1 1.3429 -0.9489 5.1122 11 1 2.4857 -2.5659 3.7123 12 7 2.0184 -0.6907 -1.1961 13 7 2.2575 0.0308 -2.3730 14 6 2.6949 -0.5797 -3.4302 15 6 2.9463 0.1804 -4.6705 16 6 3.4100 -0.3147 -5.8588 17 7 3.4800 0.7415 -6.7006 18 6 3.9234 0.6952 -8.0962 19 6 3.9907 -0.7283 -8.6742 20 6 5.2925 -0.2964 -9.3733 21 6 5.4515 0.7516 -8.2592 22 7 3.0967 1.7944 -6.0689 23 7 2.7712 1.5025 -4.8594 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7080 1.1611 3.4843 28 1 2.1802 -1.6468 -1.1719 29 1 2.8746 -1.6443 -3.4034 30 1 3.6666 -1.3401 -6.0798 31 1 3.3899 1.4005 -8.7334 32 1 4.1362 -1.5000 -7.9184 33 1 3.1788 -0.9581 -9.3643 34 1 5.1333 0.1368 -10.3608 35 1 6.0688 -1.0616 -9.3670 36 1 5.8173 1.7149 -8.6149 37 1 5.9972 0.3852 -7.3897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853324077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:19 Heat of formation + Delta-G solvation = 137.854941 kcal Electronic energy + Delta-G solvation = -18601.150929 eV Core-core repulsion = 15609.633547 eV Total energy + Delta-G solvation = -2991.517382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.13452 -39.72249 -38.09542 -35.97951 -34.19737 -33.28346 -31.92539 -29.02358 -27.30373 -26.87749 -26.74914 -24.76692 -23.09118 -22.30039 -21.40547 -20.44623 -19.02367 -18.23714 -17.34205 -17.27506 -16.96726 -16.35541 -15.94144 -15.53719 -15.01844 -14.50719 -14.33942 -13.96820 -13.66325 -13.44580 -13.31159 -12.90820 -12.80788 -12.73194 -12.68590 -12.45925 -12.22388 -12.06911 -11.74042 -11.64092 -11.45181 -11.14270 -10.87564 -10.83480 -10.59721 -10.37007 -8.50218 -8.15968 -6.33865 0.51271 0.95696 1.43713 1.45245 1.47926 1.56068 2.18657 2.33236 2.48420 3.12685 3.18878 3.43773 3.48063 3.77324 3.80794 3.97875 4.16526 4.37346 4.53555 4.69846 4.71249 4.74235 4.82842 4.93773 4.98438 4.99654 5.09851 5.12908 5.16514 5.33074 5.37171 5.54853 5.77017 5.79065 5.89143 6.17967 6.42873 6.85905 7.37621 7.55860 7.85126 8.89483 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.048745 B = 0.002989 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.285865 B = 9364.624103 C = 9569.661983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.307 3.693 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.066 0.934 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.262 1.262 12 N -0.636 5.636 13 N -0.236 5.236 14 C 0.060 3.940 15 C 0.014 3.986 16 C -0.006 4.006 17 N -0.270 5.270 18 C 0.093 3.907 19 C -0.135 4.135 20 C -0.121 4.121 21 C -0.147 4.147 22 N -0.123 5.123 23 N -0.299 5.299 24 H 0.013 0.987 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.267 0.733 28 H 0.377 0.623 29 H 0.155 0.845 30 H 0.243 0.757 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -8.211 -25.891 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.203 3.797 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.186 1.186 12 N -0.374 5.374 13 N -0.048 5.048 14 C -0.152 4.152 15 C -0.126 4.126 16 C -0.161 4.161 17 N -0.063 5.063 18 C -0.006 4.006 19 C -0.173 4.173 20 C -0.159 4.159 21 C -0.186 4.186 22 N -0.102 5.102 23 N -0.166 5.166 24 H 0.032 0.968 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.215 0.785 29 H 0.172 0.828 30 H 0.259 0.741 31 H 0.157 0.843 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.324 -5.535 -25.328 27.229 hybrid contribution 0.418 -1.948 0.969 2.215 sum 8.742 -7.483 -24.359 26.940 Atomic orbital electron populations 1.22014 0.98827 0.99224 0.99443 1.18109 0.90285 0.91462 0.79847 0.98785 1.21533 1.32471 1.13547 0.90935 0.91602 1.25792 0.94881 0.95678 1.02159 1.70045 1.36927 1.23929 1.24686 0.85310 0.77843 0.79025 0.77927 1.20328 1.20564 1.18625 1.48479 1.74539 1.07663 1.06759 1.74115 1.06989 1.28919 0.94739 1.22942 1.05728 0.97443 0.89131 1.20232 1.07103 0.90428 0.94816 1.23916 1.06269 0.97377 0.88507 1.47754 1.40537 1.05080 1.12954 1.24135 0.97983 1.03651 0.74851 1.23531 1.00331 0.92736 1.00729 1.22727 0.97264 0.98222 0.97681 1.23454 0.92236 1.02178 1.00705 1.78132 1.17641 1.13244 1.01161 1.75493 1.18053 1.15086 1.07994 0.96839 0.94612 0.91295 0.92429 0.78544 0.82822 0.74108 0.84311 0.87453 0.88121 0.87801 0.88656 0.89735 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.22 9.29 71.98 0.67 -6.55 16 2 C 0.31 16.97 3.23 44.25 0.14 17.12 16 3 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 4 C -0.55 -30.52 8.74 25.60 0.22 -30.30 16 5 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 6 C 0.01 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.68 16 8 Si 0.97 43.36 29.54 68.60 2.03 45.38 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 12 N -0.64 -29.98 6.10 -172.52 -1.05 -31.04 16 13 N -0.24 -10.76 11.47 -52.09 -0.60 -11.36 16 14 C 0.06 2.07 11.01 87.49 0.96 3.04 16 15 C 0.01 0.45 7.11 40.85 0.29 0.74 16 16 C -0.01 -0.12 10.77 83.84 0.90 0.78 16 17 N -0.27 -5.95 3.53 -323.51 -1.14 -7.09 16 18 C 0.09 1.09 4.94 45.52 0.22 1.31 16 19 C -0.13 -0.60 7.45 31.18 0.23 -0.37 16 20 C -0.12 -0.35 8.09 31.18 0.25 -0.10 16 21 C -0.15 -1.30 7.88 31.12 0.25 -1.05 16 22 N -0.12 -4.06 13.13 37.02 0.49 -3.58 16 23 N -0.30 -11.86 12.44 -49.62 -0.62 -12.48 16 24 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 27 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.38 15.63 8.58 -213.32 -1.83 13.80 16 29 H 0.15 3.90 8.02 -2.91 -0.02 3.88 16 30 H 0.24 2.14 6.73 -2.91 -0.02 2.12 16 31 H 0.14 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.11 0.30 6.32 -2.39 -0.02 0.28 16 33 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -77.57 317.75 3.19 -74.38 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -0.75 Total: 13.57 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.60 Total: -14.11 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -2.68 Total: -119.22 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -77.57 3.19 -74.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853324077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.232 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds