Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47327 * 2 1 4 4 N 1.46894 * 109.47332 * 239.99803 * 2 1 3 5 5 C 1.53001 * 109.47203 * 119.99799 * 2 1 3 6 6 H 1.09000 * 109.46920 * 58.61997 * 5 2 1 7 7 C 1.50706 * 109.46885 * 298.62304 * 5 2 1 8 8 C 1.38228 * 119.61571 * 90.51967 * 7 5 2 9 9 C 1.38632 * 119.15565 * 179.79010 * 8 7 5 10 10 C 1.38670 * 118.42133 * 0.47054 * 9 8 7 11 11 C 1.38186 * 119.16457 * 359.50128 * 10 9 8 12 12 N 1.31856 * 119.61530 * 270.53292 * 7 5 2 13 13 N 1.46903 * 109.47433 * 178.62344 * 5 2 1 14 14 C 1.46896 * 111.00019 * 153.76944 * 13 5 2 15 15 C 1.46899 * 110.99855 * 29.81128 * 13 5 2 16 16 H 1.08998 * 109.47140 * 311.28954 * 15 13 5 17 17 C 1.53005 * 109.47146 * 71.29106 * 15 13 5 18 18 C 1.50701 * 109.47116 * 191.29178 * 15 13 5 19 19 H 1.07995 * 119.99609 * 359.97438 * 18 15 13 20 20 C 1.37872 * 119.99989 * 180.02562 * 18 15 13 21 21 N 1.31509 * 120.00176 * 0.02562 * 20 18 15 22 22 Si 1.86807 * 120.00029 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46740 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46890 * 119.99741 * 22 20 18 25 25 H 1.48496 * 109.47213 * 240.00231 * 22 20 18 26 26 H 1.09004 * 109.46984 * 300.00418 * 1 2 3 27 27 H 1.09004 * 109.46982 * 60.00311 * 1 2 3 28 28 H 1.09003 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.00900 * 111.00020 * 63.29355 * 4 2 1 30 30 H 1.00902 * 111.00129 * 187.25007 * 4 2 1 31 31 H 1.07995 * 120.42027 * 0.03185 * 8 7 5 32 32 H 1.08003 * 120.78561 * 180.22753 * 9 8 7 33 33 H 1.08002 * 120.41745 * 179.78487 * 10 9 8 34 34 H 1.08000 * 119.61749 * 180.25485 * 11 10 9 35 35 H 1.08995 * 109.47677 * 48.63037 * 14 13 5 36 36 H 1.09004 * 109.47413 * 168.63703 * 14 13 5 37 37 H 1.09002 * 109.46918 * 288.62961 * 14 13 5 38 38 H 1.09003 * 109.46699 * 51.64979 * 17 15 13 39 39 H 1.08995 * 109.47187 * 171.65515 * 17 15 13 40 40 H 1.09004 * 109.46862 * 291.65728 * 17 15 13 41 41 H 0.97005 * 120.00398 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0400 -0.7212 1.2493 6 1 1.6566 -1.7415 1.2617 7 6 1.5657 0.0088 2.4795 8 6 0.3613 -0.3420 3.0601 9 6 -0.0637 0.3328 4.1941 10 6 0.7374 1.3463 4.6981 11 6 1.9293 1.6409 4.0640 12 7 2.3043 0.9748 2.9893 13 7 3.5086 -0.7501 1.2328 14 6 4.0487 -0.8398 2.5959 15 6 4.0503 0.4192 0.5277 16 1 3.5389 0.5364 -0.4277 17 6 3.8352 1.6726 1.3785 18 6 5.5249 0.2222 0.2872 19 1 6.0111 -0.6811 0.6249 20 6 6.2534 1.1956 -0.3629 21 7 5.6617 2.2962 -0.7726 22 14 8.0815 0.9518 -0.6603 23 1 8.5024 -0.3601 -0.1061 24 1 8.3539 0.9824 -2.1197 25 1 8.8411 2.0387 0.0080 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7411 -0.2048 -2.0376 30 1 3.0212 -0.8102 -1.1654 31 1 -0.2390 -1.1343 2.6380 32 1 -0.9985 0.0778 4.6712 33 1 0.4357 1.8953 5.5778 34 1 2.5608 2.4260 4.4527 35 1 3.5353 -1.6333 3.1388 36 1 5.1150 -1.0617 2.5505 37 1 3.8968 0.1093 3.1100 38 1 4.2176 1.4989 2.3843 39 1 4.3645 2.5124 0.9284 40 1 2.7702 1.8992 1.4288 41 1 6.1742 2.9810 -1.2304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220912848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = 104.226608 kcal Electronic energy + Delta-G solvation = -21638.202218 eV Core-core repulsion = 18748.766946 eV Total energy + Delta-G solvation = -2889.435272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68514 -37.80372 -34.45797 -32.83906 -32.03937 -31.28774 -28.62433 -28.24418 -26.61509 -25.12116 -23.67325 -23.17000 -21.96662 -20.44774 -18.47543 -16.82191 -16.36275 -15.78007 -15.60474 -15.19495 -14.87871 -14.44203 -14.28024 -13.99504 -13.35546 -12.90022 -12.75896 -12.40258 -12.20489 -11.94110 -11.71603 -11.42044 -11.24590 -11.06908 -10.88293 -10.77576 -10.52280 -10.32037 -10.25075 -9.96757 -9.58971 -9.29320 -8.82500 -8.65918 -8.51417 -7.97330 -7.90657 -6.93644 -5.91735 -3.95234 1.35774 1.53748 3.33892 3.41942 3.47083 4.04159 4.47127 4.55776 4.91647 5.02859 5.13847 5.26623 5.31473 5.39146 5.41877 5.44605 5.79268 5.82088 5.86925 5.97205 6.08400 6.22462 6.27015 6.35070 6.36982 6.40625 6.66939 6.78485 6.87290 6.99092 7.25856 7.39548 7.44227 7.65376 7.81322 7.90892 8.09508 8.18768 8.25614 8.35169 8.55990 8.72671 9.11694 9.68947 11.13277 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.007293 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.208238 B = 3838.487157 C = 4401.719080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.055 0.945 4 N -0.846 5.846 5 C 0.136 3.864 6 H 0.088 0.912 7 C 0.106 3.894 8 C -0.166 4.166 9 C -0.088 4.088 10 C -0.182 4.182 11 C 0.079 3.921 12 N -0.426 5.426 13 N -0.516 5.516 14 C 0.015 3.985 15 C 0.193 3.807 16 H 0.045 0.955 17 C -0.151 4.151 18 C -0.494 4.494 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.892 3.108 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.287 1.287 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.330 0.670 30 H 0.368 0.632 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 -2.136 7.447 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 H 0.073 0.927 4 N -0.381 5.381 5 C 0.025 3.975 6 H 0.106 0.894 7 C -0.033 4.033 8 C -0.187 4.187 9 C -0.114 4.114 10 C -0.202 4.202 11 C -0.077 4.077 12 N -0.136 5.136 13 N -0.237 5.237 14 C -0.133 4.133 15 C 0.087 3.913 16 H 0.063 0.937 17 C -0.210 4.210 18 C -0.532 4.532 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.214 1.214 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.187 0.813 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.797 -2.820 6.928 13.135 hybrid contribution 0.416 1.431 0.641 1.622 sum -10.382 -1.389 7.570 12.923 Atomic orbital electron populations 1.21903 0.95694 1.01758 1.00961 1.21347 0.93824 0.96884 0.90136 0.92747 1.58913 1.21776 1.54679 1.02748 1.20945 0.91281 0.96663 0.88563 0.89376 1.22443 0.90663 0.92321 0.97849 1.21957 0.97828 1.01825 0.97090 1.21442 0.99306 0.95257 0.95441 1.22017 0.96853 0.99549 1.01816 1.22962 0.94429 0.98321 0.92028 1.69067 1.31047 1.04683 1.08806 1.62791 1.01263 1.43719 1.15962 1.22746 0.99728 1.00452 0.90364 1.19667 0.94697 0.84296 0.92648 0.93738 1.22710 0.97212 1.01822 0.99273 1.21198 0.93206 1.03101 1.35739 0.92233 1.24892 0.98145 0.95224 0.96077 1.69921 1.35519 1.07864 1.40056 0.86534 0.85763 0.77969 0.77673 1.19848 1.21247 1.21369 0.92860 0.93097 0.92217 0.85869 0.81271 0.85343 0.85631 0.85704 0.83306 0.95423 0.92083 0.90910 0.93716 0.91581 0.95779 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.97 37.16 0.33 -1.79 16 2 C 0.09 1.62 2.18 -67.72 -0.15 1.48 16 3 H 0.05 1.16 5.03 -51.93 -0.26 0.90 16 4 N -0.85 -15.44 8.90 -4.67 -0.04 -15.48 16 5 C 0.14 2.51 2.30 -68.86 -0.16 2.35 16 6 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 7 C 0.11 1.79 3.96 -82.58 -0.33 1.46 16 8 C -0.17 -2.30 7.96 -39.44 -0.31 -2.61 16 9 C -0.09 -1.06 10.18 -39.28 -0.40 -1.46 16 10 C -0.18 -2.24 10.11 -39.44 -0.40 -2.64 16 11 C 0.08 1.18 11.18 -17.55 -0.20 0.98 16 12 N -0.43 -7.62 2.12 -9.47 -0.02 -7.64 16 13 N -0.52 -11.12 4.53 -229.68 -1.04 -12.16 16 14 C 0.02 0.32 7.92 60.06 0.48 0.79 16 15 C 0.19 4.71 1.19 -68.86 -0.08 4.63 16 16 H 0.05 1.14 4.03 -51.93 -0.21 0.93 16 17 C -0.15 -3.68 6.84 37.16 0.25 -3.42 16 18 C -0.49 -13.44 8.08 -34.44 -0.28 -13.71 16 19 H 0.06 1.66 7.19 -52.49 -0.38 1.28 16 20 C 0.06 1.57 5.28 -17.82 -0.09 1.47 16 21 N -0.89 -25.32 11.29 55.43 0.63 -24.70 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H 0.05 0.75 6.21 -51.93 -0.32 0.43 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.33 5.50 9.06 -39.29 -0.36 5.14 16 30 H 0.37 7.74 6.28 -39.29 -0.25 7.50 16 31 H 0.13 1.53 8.05 -52.49 -0.42 1.10 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.03 0.52 7.93 -51.93 -0.41 0.11 16 36 H 0.06 1.35 7.17 -51.93 -0.37 0.97 16 37 H 0.07 1.54 3.38 -51.95 -0.18 1.37 16 38 H 0.04 1.07 5.10 -51.93 -0.26 0.81 16 39 H 0.07 1.82 5.89 -51.93 -0.31 1.52 16 40 H 0.02 0.55 4.40 -51.93 -0.23 0.33 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -28.81 300.42 -7.93 -36.73 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -5.62 Total: 14.68 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -1.33 Total: -12.48 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.48 Total: -59.97 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.81 -7.93 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220912848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.961 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds