Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47327 * 2 1 4 4 N 1.46894 * 109.47332 * 239.99803 * 2 1 3 5 5 C 1.53001 * 109.47203 * 119.99799 * 2 1 3 6 6 H 1.09000 * 109.46920 * 58.61997 * 5 2 1 7 7 C 1.50706 * 109.46885 * 298.62304 * 5 2 1 8 8 C 1.38228 * 119.61571 * 90.51967 * 7 5 2 9 9 C 1.38632 * 119.15565 * 179.79010 * 8 7 5 10 10 C 1.38670 * 118.42133 * 0.47054 * 9 8 7 11 11 C 1.38186 * 119.16457 * 359.50128 * 10 9 8 12 12 N 1.31856 * 119.61530 * 270.53292 * 7 5 2 13 13 N 1.46903 * 109.47433 * 178.62344 * 5 2 1 14 14 C 1.46896 * 111.00019 * 153.76944 * 13 5 2 15 15 C 1.46899 * 110.99855 * 29.81128 * 13 5 2 16 16 H 1.08998 * 109.47140 * 311.28954 * 15 13 5 17 17 C 1.53005 * 109.47146 * 71.29106 * 15 13 5 18 18 C 1.50701 * 109.47116 * 191.29178 * 15 13 5 19 19 H 1.07995 * 119.99609 * 359.97438 * 18 15 13 20 20 C 1.37872 * 119.99989 * 180.02562 * 18 15 13 21 21 N 1.31509 * 120.00176 * 0.02562 * 20 18 15 22 22 Si 1.86807 * 120.00029 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46740 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46890 * 119.99741 * 22 20 18 25 25 H 1.48496 * 109.47213 * 240.00231 * 22 20 18 26 26 H 1.09004 * 109.46984 * 300.00418 * 1 2 3 27 27 H 1.09004 * 109.46982 * 60.00311 * 1 2 3 28 28 H 1.09003 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.00900 * 111.00020 * 63.29355 * 4 2 1 30 30 H 1.00902 * 111.00129 * 187.25007 * 4 2 1 31 31 H 1.07995 * 120.42027 * 0.03185 * 8 7 5 32 32 H 1.08003 * 120.78561 * 180.22753 * 9 8 7 33 33 H 1.08002 * 120.41745 * 179.78487 * 10 9 8 34 34 H 1.08000 * 119.61749 * 180.25485 * 11 10 9 35 35 H 1.08995 * 109.47677 * 48.63037 * 14 13 5 36 36 H 1.09004 * 109.47413 * 168.63703 * 14 13 5 37 37 H 1.09002 * 109.46918 * 288.62961 * 14 13 5 38 38 H 1.09003 * 109.46699 * 51.64979 * 17 15 13 39 39 H 1.08995 * 109.47187 * 171.65515 * 17 15 13 40 40 H 1.09004 * 109.46862 * 291.65728 * 17 15 13 41 41 H 0.97005 * 120.00398 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0400 -0.7212 1.2493 6 1 1.6566 -1.7415 1.2617 7 6 1.5657 0.0088 2.4795 8 6 0.3613 -0.3420 3.0601 9 6 -0.0637 0.3328 4.1941 10 6 0.7374 1.3463 4.6981 11 6 1.9293 1.6409 4.0640 12 7 2.3043 0.9748 2.9893 13 7 3.5086 -0.7501 1.2328 14 6 4.0487 -0.8398 2.5959 15 6 4.0503 0.4192 0.5277 16 1 3.5389 0.5364 -0.4277 17 6 3.8352 1.6726 1.3785 18 6 5.5249 0.2222 0.2872 19 1 6.0111 -0.6811 0.6249 20 6 6.2534 1.1956 -0.3629 21 7 5.6617 2.2962 -0.7726 22 14 8.0815 0.9518 -0.6603 23 1 8.5024 -0.3601 -0.1061 24 1 8.3539 0.9824 -2.1197 25 1 8.8411 2.0387 0.0080 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7411 -0.2048 -2.0376 30 1 3.0212 -0.8102 -1.1654 31 1 -0.2390 -1.1343 2.6380 32 1 -0.9985 0.0778 4.6712 33 1 0.4357 1.8953 5.5778 34 1 2.5608 2.4260 4.4527 35 1 3.5353 -1.6333 3.1388 36 1 5.1150 -1.0617 2.5505 37 1 3.8968 0.1093 3.1100 38 1 4.2176 1.4989 2.3843 39 1 4.3645 2.5124 0.9284 40 1 2.7702 1.8992 1.4288 41 1 6.1742 2.9810 -1.2304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220912848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = 84.684859 kcal Electronic energy + Delta-G solvation = -21639.049612 eV Core-core repulsion = 18748.766946 eV Total energy + Delta-G solvation = -2890.282666 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.97000 -39.21381 -36.05212 -34.64876 -33.19425 -32.70029 -30.33513 -29.62367 -28.07538 -27.16275 -25.24593 -24.27753 -23.23795 -22.06446 -20.09912 -18.30462 -17.96800 -17.11466 -16.92903 -16.70062 -16.42653 -16.12012 -15.58796 -15.52744 -14.80910 -14.27157 -14.12711 -13.87538 -13.79699 -13.43432 -13.05218 -12.87880 -12.78674 -12.65084 -12.53222 -12.48570 -12.20463 -12.12576 -11.90738 -11.76618 -11.35748 -10.77953 -10.45547 -10.42069 -9.77801 -9.61146 -9.44168 -8.58356 -8.02592 -6.12433 0.27526 0.51294 1.39955 1.42424 1.53743 2.45783 2.92242 3.24765 3.27060 3.66862 3.78448 4.03164 4.05234 4.13939 4.31470 4.38996 4.41153 4.46193 4.65948 4.74430 4.84934 4.91996 5.00599 5.02068 5.08246 5.14267 5.28302 5.34693 5.36705 5.44323 5.47846 5.52210 5.71009 5.83143 5.94665 6.15714 6.26964 6.38772 6.60112 6.65996 6.86928 7.03181 7.23373 7.55541 9.00723 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.007293 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.208238 B = 3838.487157 C = 4401.719080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.093 3.907 3 H 0.016 0.984 4 N -0.841 5.841 5 C 0.137 3.863 6 H 0.096 0.904 7 C 0.082 3.918 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.168 4.168 11 C 0.058 3.942 12 N -0.470 5.470 13 N -0.527 5.527 14 C 0.023 3.977 15 C 0.204 3.796 16 H 0.033 0.967 17 C -0.127 4.127 18 C -0.508 4.508 19 H 0.046 0.954 20 C 0.013 3.987 21 N -0.917 5.917 22 Si 0.951 3.049 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.285 1.285 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.337 0.663 30 H 0.350 0.650 31 H 0.150 0.850 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.027 0.973 40 H 0.034 0.966 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.462 -2.771 8.873 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.019 4.019 3 H 0.034 0.966 4 N -0.374 5.374 5 C 0.027 3.973 6 H 0.113 0.887 7 C -0.056 4.056 8 C -0.183 4.183 9 C -0.106 4.106 10 C -0.187 4.187 11 C -0.098 4.098 12 N -0.180 5.180 13 N -0.249 5.249 14 C -0.125 4.125 15 C 0.097 3.903 16 H 0.050 0.950 17 C -0.186 4.186 18 C -0.547 4.547 19 H 0.064 0.936 20 C -0.185 4.185 21 N -0.558 5.558 22 Si 0.778 3.222 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.211 1.211 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.149 0.851 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.912 -3.462 8.357 15.765 hybrid contribution 0.966 1.625 0.280 1.911 sum -11.946 -1.837 8.637 14.855 Atomic orbital electron populations 1.21799 0.92674 1.02948 1.01704 1.21338 0.96109 0.94494 0.89973 0.96626 1.58976 1.20283 1.54674 1.03463 1.20918 0.89062 0.97448 0.89897 0.88668 1.22127 0.92396 0.93277 0.97836 1.22154 0.96589 1.02144 0.97389 1.21909 1.00329 0.93981 0.94372 1.22368 0.95256 0.99096 1.01998 1.23193 0.96074 0.98623 0.91931 1.68683 1.32770 1.05953 1.10632 1.62648 1.03774 1.42289 1.16187 1.22636 0.98407 1.01075 0.90353 1.19387 0.93146 0.85293 0.92485 0.94978 1.22492 0.97309 1.00308 0.98480 1.21463 0.95015 1.02573 1.35659 0.93601 1.25563 1.01898 0.95029 0.96020 1.70053 1.36770 1.08388 1.40559 0.85613 0.81243 0.77752 0.77604 1.19699 1.20696 1.21125 0.92102 0.92390 0.90671 0.85128 0.83289 0.83221 0.81647 0.82273 0.82793 0.93710 0.94424 0.90994 0.94063 0.95437 0.94724 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.97 71.98 0.65 -3.00 16 2 C 0.09 3.34 2.18 44.92 0.10 3.44 16 3 H 0.02 0.69 5.03 -2.39 -0.01 0.68 16 4 N -0.84 -30.93 8.90 -168.70 -1.50 -32.43 16 5 C 0.14 4.97 2.30 44.17 0.10 5.08 16 6 H 0.10 3.28 8.07 -2.39 -0.02 3.26 16 7 C 0.08 2.66 3.96 42.55 0.17 2.83 16 8 C -0.16 -3.93 7.96 22.36 0.18 -3.76 16 9 C -0.08 -1.55 10.18 22.47 0.23 -1.32 16 10 C -0.17 -3.49 10.11 22.36 0.23 -3.26 16 11 C 0.06 1.64 11.18 84.67 0.95 2.59 16 12 N -0.47 -16.61 2.12 -183.88 -0.39 -17.00 16 13 N -0.53 -23.17 4.53 -880.57 -3.99 -27.16 16 14 C 0.02 0.99 7.92 127.69 1.01 2.00 16 15 C 0.20 10.31 1.19 44.17 0.05 10.36 16 16 H 0.03 1.73 4.03 -2.39 -0.01 1.72 16 17 C -0.13 -6.41 6.84 71.98 0.49 -5.92 16 18 C -0.51 -28.63 8.08 25.60 0.21 -28.42 16 19 H 0.05 2.65 7.19 -2.91 -0.02 2.63 16 20 C 0.01 0.72 5.28 84.65 0.45 1.17 16 21 N -0.92 -53.57 11.29 21.44 0.24 -53.33 16 22 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 23 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 H 0.06 1.57 6.21 -2.38 -0.01 1.56 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.34 11.33 9.06 -89.69 -0.81 10.51 16 30 H 0.35 15.21 6.28 -89.69 -0.56 14.65 16 31 H 0.15 2.92 8.05 -2.91 -0.02 2.89 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 35 H 0.04 1.69 7.93 -2.39 -0.02 1.67 16 36 H 0.04 1.71 7.17 -2.38 -0.02 1.69 16 37 H 0.07 3.11 3.38 -2.42 -0.01 3.10 16 38 H 0.04 2.06 5.10 -2.39 -0.01 2.04 16 39 H 0.03 1.57 5.89 -2.39 -0.01 1.55 16 40 H 0.03 1.66 4.40 -2.39 -0.01 1.64 16 41 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -64.34 300.42 0.87 -63.47 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.32 Total: 37.48 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.80 Total: -18.22 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -5.64 Total: -129.92 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.34 0.87 -63.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220912848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.151 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds