Wall clock time and date at job start Mon Mar 30 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47830 * 2 1 4 4 N 1.46901 * 109.47163 * 239.99707 * 2 1 3 5 5 C 1.53002 * 109.47106 * 119.99780 * 2 1 3 6 6 H 1.09000 * 109.47077 * 56.72054 * 5 2 1 7 7 C 1.50695 * 109.47071 * 296.71988 * 5 2 1 8 8 C 1.38671 * 120.41738 * 113.20923 * 7 5 2 9 9 C 1.38628 * 118.41952 * 180.02562 * 8 7 5 10 10 C 1.38225 * 119.16066 * 359.97438 * 9 8 7 11 11 N 1.31848 * 120.76702 * 0.02562 * 10 9 8 12 12 C 1.31892 * 121.72176 * 359.70459 * 11 10 9 13 13 N 1.46902 * 109.47107 * 176.71654 * 5 2 1 14 14 C 1.46901 * 111.00026 * 277.11765 * 13 5 2 15 15 C 1.46901 * 110.99779 * 153.16585 * 13 5 2 16 16 H 1.09002 * 109.47122 * 307.90323 * 15 13 5 17 17 C 1.52995 * 109.47234 * 67.90874 * 15 13 5 18 18 C 1.50699 * 109.47044 * 187.91024 * 15 13 5 19 19 H 1.08004 * 119.99942 * 359.97438 * 18 15 13 20 20 C 1.37877 * 120.00240 * 179.97438 * 18 15 13 21 21 N 1.31512 * 119.99722 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00228 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46771 * 60.00535 * 22 20 18 24 24 H 1.48497 * 109.46958 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47470 * 300.00611 * 22 20 18 26 26 H 1.09003 * 109.46908 * 300.00301 * 1 2 3 27 27 H 1.09001 * 109.47088 * 59.99569 * 1 2 3 28 28 H 1.09000 * 109.47903 * 180.02562 * 1 2 3 29 29 H 1.00899 * 111.00166 * 159.45485 * 4 2 1 30 30 H 1.00904 * 110.99929 * 283.41359 * 4 2 1 31 31 H 1.07999 * 120.79314 * 359.97087 * 8 7 5 32 32 H 1.08002 * 120.42353 * 180.02562 * 9 8 7 33 33 H 1.08009 * 119.61700 * 179.97438 * 10 9 8 34 34 H 1.08008 * 119.61563 * 180.31158 * 12 11 10 35 35 H 1.09000 * 109.47174 * 304.10435 * 14 13 5 36 36 H 1.08998 * 109.47162 * 64.10969 * 14 13 5 37 37 H 1.09000 * 109.47083 * 184.10793 * 14 13 5 38 38 H 1.09000 * 109.47290 * 306.00669 * 17 15 13 39 39 H 1.09001 * 109.47054 * 66.00978 * 17 15 13 40 40 H 1.09005 * 109.46961 * 186.00509 * 17 15 13 41 41 H 0.97000 * 119.99880 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0399 -0.7212 1.2493 6 1 1.6294 -1.7305 1.2792 7 6 1.6051 0.0346 2.4783 8 6 0.6916 -0.5240 3.3595 9 6 0.3201 0.2079 4.4767 10 6 0.8691 1.4610 4.6740 11 7 1.7353 1.9608 3.8148 12 6 2.1155 1.2908 2.7442 13 7 3.5068 -0.7903 1.2103 14 6 3.9589 -1.9225 0.3908 15 6 4.0665 -0.8654 2.5664 16 1 3.6609 -0.0551 3.1723 17 6 3.6958 -2.2089 3.1975 18 6 5.5666 -0.7391 2.4984 19 1 6.0554 -0.6159 1.5432 20 6 6.3152 -0.7809 3.6555 21 7 5.7200 -0.9315 4.8186 22 14 8.1748 -0.6252 3.5711 23 1 8.5350 0.6785 2.9578 24 1 8.7405 -0.6997 4.9421 25 1 8.7272 -1.7296 2.7464 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 2.9717 -0.4297 -1.4053 30 1 1.9341 -1.6930 -1.0995 31 1 0.2787 -1.5056 3.1793 32 1 -0.3886 -0.1962 5.1844 33 1 0.5846 2.0378 5.5417 34 1 2.8310 1.7309 2.0653 35 1 3.5172 -2.8443 0.7694 36 1 3.6495 -1.7692 -0.6431 37 1 5.0455 -1.9942 0.4380 38 1 2.6157 -2.3470 3.1499 39 1 4.1895 -3.0143 2.6536 40 1 4.0183 -2.2226 4.2386 41 1 6.2467 -0.9612 5.6326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220915790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:32 Heat of formation + Delta-G solvation = 56.159255 kcal Electronic energy + Delta-G solvation = -21360.123294 eV Core-core repulsion = 18468.603665 eV Total energy + Delta-G solvation = -2891.519629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29463 -37.92607 -35.02499 -32.52318 -32.17938 -31.25861 -28.81362 -28.52162 -26.38640 -25.27345 -23.85086 -22.98651 -22.19797 -20.31190 -19.01106 -16.80572 -16.33223 -16.13503 -15.64068 -15.30899 -14.79805 -14.43754 -14.00490 -13.71828 -13.27011 -13.06825 -12.83595 -12.65946 -12.52020 -12.01165 -11.82255 -11.74858 -11.49736 -11.15916 -10.99060 -10.84723 -10.71690 -10.70466 -10.43232 -10.11241 -9.94179 -9.37562 -9.13839 -8.94769 -8.58565 -8.39505 -7.98032 -7.27848 -6.02850 -4.06334 1.58009 1.74903 3.30467 3.35450 3.37712 4.26022 4.37800 4.69935 4.74578 4.94433 5.19537 5.26569 5.30486 5.37513 5.44001 5.47509 5.61905 5.72994 5.84700 5.96152 5.97062 6.03574 6.20060 6.25547 6.35839 6.38128 6.49195 6.58685 6.70430 6.72615 6.81778 7.08044 7.15060 7.38116 7.39633 7.60842 7.70744 7.77803 8.05501 8.28109 8.46940 8.52166 8.98079 9.58071 11.04245 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.008410 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.541142 B = 3328.692005 C = 4323.708118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.102 3.898 3 H 0.082 0.918 4 N -0.842 5.842 5 C 0.095 3.905 6 H 0.042 0.958 7 C -0.107 4.107 8 C -0.075 4.075 9 C -0.178 4.178 10 C 0.088 3.912 11 N -0.486 5.486 12 C 0.136 3.864 13 N -0.527 5.527 14 C 0.018 3.982 15 C 0.204 3.796 16 H 0.054 0.946 17 C -0.165 4.165 18 C -0.503 4.503 19 H 0.061 0.939 20 C 0.060 3.940 21 N -0.891 5.891 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.279 1.279 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.350 0.650 30 H 0.335 0.665 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.015 0.985 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.004 0.996 39 H 0.028 0.972 40 H 0.082 0.918 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 -0.235 -4.989 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.010 4.010 3 H 0.100 0.900 4 N -0.374 5.374 5 C -0.016 4.016 6 H 0.060 0.940 7 C -0.109 4.109 8 C -0.101 4.101 9 C -0.198 4.198 10 C -0.068 4.068 11 N -0.195 5.195 12 C -0.022 4.022 13 N -0.251 5.251 14 C -0.130 4.130 15 C 0.098 3.902 16 H 0.072 0.928 17 C -0.224 4.224 18 C -0.542 4.542 19 H 0.079 0.921 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.205 1.205 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.165 0.835 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.023 0.977 39 H 0.047 0.953 40 H 0.100 0.900 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.454 1.418 -5.255 11.786 hybrid contribution 1.180 -2.257 1.223 2.826 sum -9.274 -0.839 -4.032 10.147 Atomic orbital electron populations 1.21768 0.95180 1.01379 1.01361 1.21409 0.94281 0.98367 0.86945 0.89981 1.59114 1.28823 1.11722 1.37703 1.21384 0.91317 0.96511 0.92426 0.94018 1.20626 0.96895 0.96285 0.97136 1.21326 0.96154 0.98997 0.93646 1.21938 1.02577 0.96613 0.98686 1.22600 0.93156 0.93475 0.97575 1.67694 1.11773 1.36708 1.03277 1.22582 0.95248 0.90857 0.93526 1.62481 1.03596 1.41882 1.17104 1.22676 1.02652 0.91579 0.96138 1.19552 0.94666 0.93546 0.82443 0.92816 1.22354 0.95288 0.99994 1.04775 1.21032 0.90627 1.49539 0.93005 0.92082 1.24910 0.98509 0.95295 0.95405 1.69892 1.35314 1.50131 0.97620 0.86609 0.85523 0.78641 0.76903 1.20193 1.21434 1.20462 0.92732 0.92240 0.93287 0.83473 0.85170 0.85953 0.85594 0.83579 0.82573 0.96634 0.92855 0.90289 0.97653 0.95279 0.89973 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.31 37.15 0.35 -1.41 16 2 C 0.10 1.46 3.11 -67.72 -0.21 1.25 16 3 H 0.08 1.26 7.77 -51.93 -0.40 0.86 16 4 N -0.84 -11.09 8.33 -4.67 -0.04 -11.13 16 5 C 0.09 1.56 0.93 -68.86 -0.06 1.50 16 6 H 0.04 0.70 7.19 -51.93 -0.37 0.33 16 7 C -0.11 -1.85 1.89 -104.49 -0.20 -2.05 16 8 C -0.07 -1.19 8.94 -39.28 -0.35 -1.54 16 9 C -0.18 -2.66 10.11 -39.44 -0.40 -3.06 16 10 C 0.09 1.43 11.18 -17.55 -0.20 1.24 16 11 N -0.49 -9.23 10.36 -13.25 -0.14 -9.37 16 12 C 0.14 2.57 8.03 -17.55 -0.14 2.43 16 13 N -0.53 -10.16 4.37 -229.69 -1.00 -11.17 16 14 C 0.02 0.32 7.93 60.07 0.48 0.80 16 15 C 0.20 4.83 1.75 -68.87 -0.12 4.71 16 16 H 0.05 1.41 4.67 -51.93 -0.24 1.17 16 17 C -0.16 -3.90 7.98 37.15 0.30 -3.60 16 18 C -0.50 -13.36 7.84 -34.44 -0.27 -13.63 16 19 H 0.06 1.62 7.01 -52.48 -0.37 1.25 16 20 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 21 N -0.89 -25.35 11.39 55.43 0.63 -24.72 16 22 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.05 0.71 7.30 -51.93 -0.38 0.33 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.35 4.70 7.37 -39.29 -0.29 4.41 16 30 H 0.33 4.22 7.40 -39.29 -0.29 3.92 16 31 H 0.12 1.73 8.01 -52.49 -0.42 1.31 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.16 3.04 7.99 -52.48 -0.42 2.62 16 35 H 0.02 0.27 6.68 -51.93 -0.35 -0.07 16 36 H 0.05 0.76 4.25 -51.93 -0.22 0.54 16 37 H 0.08 1.55 6.52 -51.93 -0.34 1.21 16 38 H 0.00 0.10 5.90 -51.93 -0.31 -0.21 16 39 H 0.03 0.67 6.89 -51.93 -0.36 0.32 16 40 H 0.08 2.20 6.26 -51.93 -0.32 1.87 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -28.58 311.52 -7.71 -36.29 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.91 Total: 10.91 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.93 Total: -11.81 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.55 Total: -56.39 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.58 -7.71 -36.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220915790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.447 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds