Wall clock time and date at job start Mon Mar 30 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47830 * 2 1 4 4 N 1.46901 * 109.47163 * 239.99707 * 2 1 3 5 5 C 1.53002 * 109.47106 * 119.99780 * 2 1 3 6 6 H 1.09000 * 109.47077 * 56.72054 * 5 2 1 7 7 C 1.50695 * 109.47071 * 296.71988 * 5 2 1 8 8 C 1.38671 * 120.41738 * 113.20923 * 7 5 2 9 9 C 1.38628 * 118.41952 * 180.02562 * 8 7 5 10 10 C 1.38225 * 119.16066 * 359.97438 * 9 8 7 11 11 N 1.31848 * 120.76702 * 0.02562 * 10 9 8 12 12 C 1.31892 * 121.72176 * 359.70459 * 11 10 9 13 13 N 1.46902 * 109.47107 * 176.71654 * 5 2 1 14 14 C 1.46901 * 111.00026 * 277.11765 * 13 5 2 15 15 C 1.46901 * 110.99779 * 153.16585 * 13 5 2 16 16 H 1.09002 * 109.47122 * 307.90323 * 15 13 5 17 17 C 1.52995 * 109.47234 * 67.90874 * 15 13 5 18 18 C 1.50699 * 109.47044 * 187.91024 * 15 13 5 19 19 H 1.08004 * 119.99942 * 359.97438 * 18 15 13 20 20 C 1.37877 * 120.00240 * 179.97438 * 18 15 13 21 21 N 1.31512 * 119.99722 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00228 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46771 * 60.00535 * 22 20 18 24 24 H 1.48497 * 109.46958 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47470 * 300.00611 * 22 20 18 26 26 H 1.09003 * 109.46908 * 300.00301 * 1 2 3 27 27 H 1.09001 * 109.47088 * 59.99569 * 1 2 3 28 28 H 1.09000 * 109.47903 * 180.02562 * 1 2 3 29 29 H 1.00899 * 111.00166 * 159.45485 * 4 2 1 30 30 H 1.00904 * 110.99929 * 283.41359 * 4 2 1 31 31 H 1.07999 * 120.79314 * 359.97087 * 8 7 5 32 32 H 1.08002 * 120.42353 * 180.02562 * 9 8 7 33 33 H 1.08009 * 119.61700 * 179.97438 * 10 9 8 34 34 H 1.08008 * 119.61563 * 180.31158 * 12 11 10 35 35 H 1.09000 * 109.47174 * 304.10435 * 14 13 5 36 36 H 1.08998 * 109.47162 * 64.10969 * 14 13 5 37 37 H 1.09000 * 109.47083 * 184.10793 * 14 13 5 38 38 H 1.09000 * 109.47290 * 306.00669 * 17 15 13 39 39 H 1.09001 * 109.47054 * 66.00978 * 17 15 13 40 40 H 1.09005 * 109.46961 * 186.00509 * 17 15 13 41 41 H 0.97000 * 119.99880 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0399 -0.7212 1.2493 6 1 1.6294 -1.7305 1.2792 7 6 1.6051 0.0346 2.4783 8 6 0.6916 -0.5240 3.3595 9 6 0.3201 0.2079 4.4767 10 6 0.8691 1.4610 4.6740 11 7 1.7353 1.9608 3.8148 12 6 2.1155 1.2908 2.7442 13 7 3.5068 -0.7903 1.2103 14 6 3.9589 -1.9225 0.3908 15 6 4.0665 -0.8654 2.5664 16 1 3.6609 -0.0551 3.1723 17 6 3.6958 -2.2089 3.1975 18 6 5.5666 -0.7391 2.4984 19 1 6.0554 -0.6159 1.5432 20 6 6.3152 -0.7809 3.6555 21 7 5.7200 -0.9315 4.8186 22 14 8.1748 -0.6252 3.5711 23 1 8.5350 0.6785 2.9578 24 1 8.7405 -0.6997 4.9421 25 1 8.7272 -1.7296 2.7464 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 2.9717 -0.4297 -1.4053 30 1 1.9341 -1.6930 -1.0995 31 1 0.2787 -1.5056 3.1793 32 1 -0.3886 -0.1962 5.1844 33 1 0.5846 2.0378 5.5417 34 1 2.8310 1.7309 2.0653 35 1 3.5172 -2.8443 0.7694 36 1 3.6495 -1.7692 -0.6431 37 1 5.0455 -1.9942 0.4380 38 1 2.6157 -2.3470 3.1499 39 1 4.1895 -3.0143 2.6536 40 1 4.0183 -2.2226 4.2386 41 1 6.2467 -0.9612 5.6326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220915790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:32 Heat of formation + Delta-G solvation = 35.935262 kcal Electronic energy + Delta-G solvation = -21361.000272 eV Core-core repulsion = 18468.603665 eV Total energy + Delta-G solvation = -2892.396607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.64047 -39.32324 -36.53179 -34.29001 -33.58402 -32.53291 -30.50183 -29.75433 -27.74874 -27.23054 -25.41165 -24.32646 -23.50392 -21.73010 -20.55933 -18.30224 -17.97030 -17.53128 -17.01852 -16.78420 -16.33220 -16.00056 -15.40520 -15.11792 -14.65542 -14.41631 -14.32047 -14.13027 -13.91658 -13.51272 -13.28875 -13.09338 -12.95829 -12.79581 -12.74989 -12.46085 -12.36268 -12.16527 -12.03865 -11.75303 -11.70409 -10.94993 -10.66351 -10.52210 -10.29371 -9.85355 -9.30394 -8.79604 -8.10548 -6.19060 0.29388 0.46364 1.39384 1.41117 1.47708 2.40997 2.94471 3.20032 3.28158 3.52782 3.73261 3.97807 4.02467 4.12917 4.18122 4.27294 4.39380 4.48520 4.63048 4.69944 4.73772 4.77294 4.80930 4.85767 4.96100 5.00723 5.16686 5.18264 5.23178 5.27287 5.34103 5.41665 5.57162 5.71539 5.76643 5.88755 6.21906 6.27394 6.45565 6.63354 6.73365 6.94737 7.16018 7.48936 8.94989 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.008410 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.541142 B = 3328.692005 C = 4323.708118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.110 3.890 3 H 0.067 0.933 4 N -0.835 5.835 5 C 0.101 3.899 6 H 0.047 0.953 7 C -0.113 4.113 8 C -0.083 4.083 9 C -0.169 4.169 10 C 0.075 3.925 11 N -0.516 5.516 12 C 0.113 3.887 13 N -0.532 5.532 14 C 0.022 3.978 15 C 0.212 3.788 16 H 0.031 0.969 17 C -0.148 4.148 18 C -0.513 4.513 19 H 0.056 0.944 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.951 3.049 23 H -0.275 1.275 24 H -0.289 1.289 25 H -0.271 1.271 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.349 0.651 30 H 0.341 0.659 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.137 0.863 35 H 0.016 0.984 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.049 0.951 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.745 -1.032 -5.620 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.003 4.003 3 H 0.086 0.914 4 N -0.367 5.367 5 C -0.010 4.010 6 H 0.065 0.935 7 C -0.116 4.116 8 C -0.110 4.110 9 C -0.188 4.188 10 C -0.082 4.082 11 N -0.225 5.225 12 C -0.044 4.044 13 N -0.256 5.256 14 C -0.127 4.127 15 C 0.104 3.896 16 H 0.048 0.952 17 C -0.208 4.208 18 C -0.552 4.552 19 H 0.074 0.926 20 C -0.187 4.187 21 N -0.558 5.558 22 Si 0.778 3.222 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.196 1.196 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.164 0.836 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.192 0.808 34 H 0.154 0.846 35 H 0.034 0.966 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.753 0.615 -5.921 13.175 hybrid contribution 1.512 -1.988 1.419 2.873 sum -10.241 -1.373 -4.502 11.271 Atomic orbital electron populations 1.21682 0.93511 1.02101 1.01535 1.21320 0.95447 0.97354 0.86158 0.91433 1.59115 1.28693 1.12115 1.36813 1.21454 0.89222 0.96876 0.93440 0.93520 1.20681 0.97377 0.95756 0.97792 1.21688 0.95726 0.99975 0.93565 1.22356 1.02110 0.95716 0.98635 1.23165 0.92574 0.94589 0.97838 1.67623 1.13078 1.37852 1.03939 1.22380 0.96071 0.91975 0.93969 1.62351 1.05637 1.42744 1.14821 1.22694 1.01178 0.91011 0.97786 1.19242 0.93256 0.92590 0.84469 0.95159 1.22139 0.96393 0.99832 1.02422 1.21391 0.92530 1.48582 0.92667 0.92598 1.25622 1.02383 0.95407 0.95259 1.70029 1.36449 1.51396 0.97968 0.85714 0.81055 0.78671 0.76782 1.20051 1.21439 1.19639 0.93132 0.91503 0.92221 0.83599 0.84413 0.83741 0.81834 0.80836 0.84579 0.96594 0.89376 0.92642 0.95568 0.95758 0.93241 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.31 71.98 0.67 -2.34 16 2 C 0.11 2.98 3.11 44.91 0.14 3.12 16 3 H 0.07 2.06 7.77 -2.39 -0.02 2.04 16 4 N -0.84 -20.18 8.33 -168.68 -1.40 -21.58 16 5 C 0.10 3.20 0.93 44.17 0.04 3.24 16 6 H 0.05 1.45 7.19 -2.39 -0.02 1.44 16 7 C -0.11 -3.85 1.89 -19.78 -0.04 -3.89 16 8 C -0.08 -2.48 8.94 22.47 0.20 -2.28 16 9 C -0.17 -4.62 10.11 22.36 0.23 -4.40 16 10 C 0.07 2.33 11.18 84.69 0.95 3.28 16 11 N -0.52 -19.80 10.36 -195.84 -2.03 -21.83 16 12 C 0.11 4.38 8.03 84.67 0.68 5.06 16 13 N -0.53 -20.33 4.37 -880.60 -3.85 -24.18 16 14 C 0.02 0.75 7.93 127.69 1.01 1.76 16 15 C 0.21 10.12 1.75 44.17 0.08 10.20 16 16 H 0.03 1.64 4.67 -2.39 -0.01 1.62 16 17 C -0.15 -7.00 7.98 71.98 0.57 -6.43 16 18 C -0.51 -27.62 7.84 25.60 0.20 -27.42 16 19 H 0.06 3.00 7.01 -2.91 -0.02 2.97 16 20 C 0.01 0.65 5.30 84.65 0.45 1.10 16 21 N -0.92 -53.27 11.39 21.45 0.24 -53.03 16 22 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 26 H 0.05 1.21 7.30 -2.39 -0.02 1.19 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.35 8.70 7.37 -89.69 -0.66 8.04 16 30 H 0.34 7.60 7.40 -89.69 -0.66 6.94 16 31 H 0.14 3.61 8.01 -2.91 -0.02 3.58 16 32 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.17 4.23 8.06 -2.91 -0.02 4.20 16 34 H 0.14 5.62 7.99 -2.91 -0.02 5.59 16 35 H 0.02 0.53 6.68 -2.39 -0.02 0.52 16 36 H 0.09 2.35 4.25 -2.39 -0.01 2.34 16 37 H 0.05 2.15 6.52 -2.39 -0.02 2.14 16 38 H 0.03 1.07 5.90 -2.39 -0.01 1.06 16 39 H 0.02 1.12 6.89 -2.39 -0.02 1.10 16 40 H 0.05 2.66 6.26 -2.38 -0.01 2.65 16 41 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -62.30 311.52 -0.11 -62.42 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.28 Total: 30.95 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 5.18 Total: -18.99 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -7.04 Total: -120.62 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -62.30 -0.11 -62.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220915790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.351 kcal (2) G-P(sol) polarization free energy of solvation -62.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds