Wall clock time and date at job start Mon Mar 30 2020 04:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00260 * 2 1 3 5 5 H 1.08003 * 120.00055 * 239.99619 * 4 2 1 6 6 C 1.37882 * 119.99978 * 60.00294 * 4 2 1 7 7 N 1.31508 * 120.00320 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99673 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47769 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47067 * 119.99879 * 8 6 4 11 11 H 1.48503 * 109.47260 * 239.99727 * 8 6 4 12 12 N 1.46501 * 109.47385 * 120.00549 * 2 1 3 13 13 C 1.46495 * 119.99857 * 59.99482 * 12 2 1 14 14 C 1.34770 * 119.99748 * 240.00247 * 12 2 1 15 15 O 1.21605 * 120.00199 * 5.32374 * 14 12 2 16 16 C 1.47440 * 120.00093 * 185.32908 * 14 12 2 17 17 C 1.39759 * 120.18246 * 45.35003 * 16 14 12 18 18 C 1.38183 * 119.86867 * 180.02562 * 17 16 14 19 19 O 1.36008 * 119.87714 * 180.02562 * 18 17 16 20 20 C 1.39009 * 120.23767 * 0.02562 * 18 17 16 21 21 C 1.37949 * 120.37156 * 359.97438 * 20 18 17 22 22 C 1.38912 * 120.12471 * 359.71852 * 21 20 18 23 23 N 1.39098 * 120.11970 * 180.29591 * 22 21 20 24 24 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47067 * 299.99578 * 1 2 3 26 26 H 1.09000 * 109.47295 * 60.00060 * 1 2 3 27 27 H 0.97000 * 120.00699 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47158 * 95.07724 * 13 12 2 29 29 H 1.08992 * 109.47706 * 335.07269 * 13 12 2 30 30 H 1.09000 * 109.47154 * 215.07403 * 13 12 2 31 31 H 1.08002 * 120.06677 * 359.97438 * 17 16 14 32 32 H 0.96699 * 113.99782 * 90.00316 * 19 18 17 33 33 H 1.07997 * 119.81374 * 180.02562 * 20 18 17 34 34 H 1.07996 * 119.93230 * 180.02562 * 21 20 18 35 35 H 0.96999 * 119.99963 * 177.78324 * 23 22 21 36 36 H 0.97000 * 120.00403 * 357.79662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 3.1482 -2.2855 -3.6040 10 1 1.1676 -1.5864 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4278 14 6 2.7932 -0.0358 2.0832 15 8 3.0073 1.1530 1.9423 16 6 3.3813 -0.7605 3.2246 17 6 3.9880 -2.0044 3.0298 18 6 4.5366 -2.6782 4.1043 19 8 5.1275 -3.8885 3.9148 20 6 4.4868 -2.1236 5.3779 21 6 3.8904 -0.8964 5.5814 22 6 3.3397 -0.2029 4.5112 23 7 2.7438 1.0373 4.7155 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7081 1.1611 -3.4844 28 1 2.4601 -2.7359 1.0508 29 1 0.7343 -2.3239 0.9085 30 1 1.5356 -2.2636 2.4967 31 1 4.0271 -2.4385 2.0417 32 1 6.0725 -3.8380 3.7160 33 1 4.9181 -2.6559 6.2127 34 1 3.8560 -0.4719 6.5738 35 1 2.3884 1.5346 3.9623 36 1 2.6837 1.4049 5.6111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235411606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:09 Heat of formation + Delta-G solvation = -49.005470 kcal Electronic energy + Delta-G solvation = -20193.384999 eV Core-core repulsion = 17063.753329 eV Total energy + Delta-G solvation = -3129.631670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16268 -38.47605 -36.85338 -35.32862 -33.62415 -32.85309 -31.16212 -29.06756 -27.70805 -26.15145 -25.22746 -23.76185 -22.22446 -20.97090 -19.05414 -17.62869 -17.04627 -16.94868 -16.52693 -16.03304 -15.41124 -14.78755 -14.51135 -14.38245 -14.06707 -13.73298 -13.00485 -12.97887 -12.65078 -12.37355 -12.26113 -11.72108 -11.56513 -11.46160 -11.07559 -10.81513 -10.70869 -10.55418 -10.29984 -10.24141 -10.17953 -9.18005 -9.07982 -8.80445 -8.44052 -7.62159 -7.33038 -6.08312 -4.16312 1.19784 1.55698 3.25771 3.28494 3.34115 3.37731 3.83572 3.95346 4.02456 4.38565 4.48570 4.90542 4.99522 5.22782 5.29951 5.49964 5.70303 5.84307 5.96735 6.12219 6.18060 6.24122 6.36078 6.54067 6.70603 6.76107 6.82149 7.04717 7.40267 7.49144 7.53153 7.70218 7.81043 7.89486 8.00433 8.17936 8.51229 8.80994 9.01239 9.50421 10.96964 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.005783 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.656780 B = 4840.381722 C = 5555.657652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.583 5.583 13 C 0.087 3.913 14 C 0.554 3.446 15 O -0.557 6.557 16 C -0.188 4.188 17 C -0.059 4.059 18 C 0.027 3.973 19 O -0.497 6.497 20 C -0.078 4.078 21 C -0.197 4.197 22 C 0.258 3.742 23 N -0.861 5.861 24 H 0.031 0.969 25 H 0.011 0.989 26 H 0.094 0.906 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.136 0.864 32 H 0.379 0.621 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.412 0.588 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -5.426 14.602 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.312 5.312 13 C -0.057 4.057 14 C 0.342 3.658 15 O -0.438 6.438 16 C -0.196 4.196 17 C -0.079 4.079 18 C -0.019 4.019 19 O -0.305 6.305 20 C -0.098 4.098 21 C -0.220 4.220 22 C 0.149 3.851 23 N -0.401 5.401 24 H 0.050 0.950 25 H 0.030 0.970 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.233 0.767 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.245 0.755 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.805 -4.913 14.418 15.700 hybrid contribution 0.657 -0.124 -0.931 1.146 sum 4.463 -5.038 13.487 15.073 Atomic orbital electron populations 1.22094 0.98153 0.99445 1.00841 1.18993 0.91000 0.94517 0.79832 0.91833 1.21361 1.31798 1.12987 0.90217 0.92183 1.24894 0.94938 0.94975 0.98987 1.69883 1.36402 1.22661 1.23672 0.86431 0.78617 0.79594 0.82703 1.19780 1.20913 1.20923 1.48183 1.48008 1.11833 1.23169 1.21671 1.01270 0.82918 0.99842 1.18042 0.79147 0.86638 0.81996 1.90690 1.62098 1.15154 1.75898 1.19474 1.09783 0.97206 0.93173 1.21500 0.95246 0.91776 0.99341 1.17995 1.03989 0.87730 0.92170 1.84913 1.26996 1.25744 1.92896 1.21180 0.97768 0.94164 0.96669 1.20368 1.07038 0.96963 0.97668 1.17684 0.89635 0.85749 0.92065 1.42692 1.65625 1.19199 1.12547 0.95042 0.96983 0.88757 0.92733 0.93291 0.90651 0.92783 0.84597 0.76673 0.85591 0.85592 0.75482 0.77698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.96 37.16 0.33 -3.19 16 2 C 0.26 6.57 2.63 -69.08 -0.18 6.39 16 3 H 0.06 1.87 6.91 -51.93 -0.36 1.52 16 4 C -0.52 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.06 1.61 7.65 -52.48 -0.40 1.21 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.58 -12.70 2.75 -176.53 -0.49 -13.19 16 13 C 0.09 1.56 8.23 59.84 0.49 2.06 16 14 C 0.55 11.82 6.80 -12.52 -0.09 11.74 16 15 O -0.56 -13.51 14.55 5.27 0.08 -13.44 16 16 C -0.19 -3.26 4.85 -104.81 -0.51 -3.76 16 17 C -0.06 -0.92 7.95 -39.03 -0.31 -1.23 16 18 C 0.03 0.37 6.69 -39.32 -0.26 0.10 16 19 O -0.50 -5.94 13.50 -19.77 -0.27 -6.21 16 20 C -0.08 -0.93 9.96 -39.40 -0.39 -1.32 16 21 C -0.20 -2.38 9.87 -39.44 -0.39 -2.77 16 22 C 0.26 3.84 6.74 -83.55 -0.56 3.27 16 23 N -0.86 -11.62 8.93 32.57 0.29 -11.33 16 24 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 28 H 0.05 0.84 6.75 -51.93 -0.35 0.49 16 29 H 0.07 1.36 6.44 -51.93 -0.33 1.02 16 30 H 0.05 0.86 6.83 -51.93 -0.35 0.51 16 31 H 0.14 2.16 6.28 -52.49 -0.33 1.83 16 32 H 0.38 2.81 9.06 45.56 0.41 3.22 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.41 6.54 6.47 -40.82 -0.26 6.28 16 36 H 0.40 3.87 8.84 -40.82 -0.36 3.51 16 LS Contribution 298.78 15.07 4.50 4.50 Total: -1.00 -31.90 298.78 -5.93 -37.83 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -3.41 Total: 11.78 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.25 Total: -1.56 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.43 Total: -48.96 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.19 Total: -19.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.90 -5.93 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.176 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds