Wall clock time and date at job start Mon Mar 30 2020 04:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00260 * 2 1 3 5 5 H 1.08003 * 120.00055 * 239.99619 * 4 2 1 6 6 C 1.37882 * 119.99978 * 60.00294 * 4 2 1 7 7 N 1.31508 * 120.00320 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99673 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47769 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47067 * 119.99879 * 8 6 4 11 11 H 1.48503 * 109.47260 * 239.99727 * 8 6 4 12 12 N 1.46501 * 109.47385 * 120.00549 * 2 1 3 13 13 C 1.46495 * 119.99857 * 59.99482 * 12 2 1 14 14 C 1.34770 * 119.99748 * 240.00247 * 12 2 1 15 15 O 1.21605 * 120.00199 * 5.32374 * 14 12 2 16 16 C 1.47440 * 120.00093 * 185.32908 * 14 12 2 17 17 C 1.39759 * 120.18246 * 45.35003 * 16 14 12 18 18 C 1.38183 * 119.86867 * 180.02562 * 17 16 14 19 19 O 1.36008 * 119.87714 * 180.02562 * 18 17 16 20 20 C 1.39009 * 120.23767 * 0.02562 * 18 17 16 21 21 C 1.37949 * 120.37156 * 359.97438 * 20 18 17 22 22 C 1.38912 * 120.12471 * 359.71852 * 21 20 18 23 23 N 1.39098 * 120.11970 * 180.29591 * 22 21 20 24 24 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47067 * 299.99578 * 1 2 3 26 26 H 1.09000 * 109.47295 * 60.00060 * 1 2 3 27 27 H 0.97000 * 120.00699 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47158 * 95.07724 * 13 12 2 29 29 H 1.08992 * 109.47706 * 335.07269 * 13 12 2 30 30 H 1.09000 * 109.47154 * 215.07403 * 13 12 2 31 31 H 1.08002 * 120.06677 * 359.97438 * 17 16 14 32 32 H 0.96699 * 113.99782 * 90.00316 * 19 18 17 33 33 H 1.07997 * 119.81374 * 180.02562 * 20 18 17 34 34 H 1.07996 * 119.93230 * 180.02562 * 21 20 18 35 35 H 0.96999 * 119.99963 * 177.78324 * 23 22 21 36 36 H 0.97000 * 120.00403 * 357.79662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 3.1482 -2.2855 -3.6040 10 1 1.1676 -1.5864 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4278 14 6 2.7932 -0.0358 2.0832 15 8 3.0073 1.1530 1.9423 16 6 3.3813 -0.7605 3.2246 17 6 3.9880 -2.0044 3.0298 18 6 4.5366 -2.6782 4.1043 19 8 5.1275 -3.8885 3.9148 20 6 4.4868 -2.1236 5.3779 21 6 3.8904 -0.8964 5.5814 22 6 3.3397 -0.2029 4.5112 23 7 2.7438 1.0373 4.7155 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7081 1.1611 -3.4844 28 1 2.4601 -2.7359 1.0508 29 1 0.7343 -2.3239 0.9085 30 1 1.5356 -2.2636 2.4967 31 1 4.0271 -2.4385 2.0417 32 1 6.0725 -3.8380 3.7160 33 1 4.9181 -2.6559 6.2127 34 1 3.8560 -0.4719 6.5738 35 1 2.3884 1.5346 3.9623 36 1 2.6837 1.4049 5.6111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235411606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:09 Heat of formation + Delta-G solvation = -73.268694 kcal Electronic energy + Delta-G solvation = -20194.437131 eV Core-core repulsion = 17063.753329 eV Total energy + Delta-G solvation = -3130.683803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.47668 -39.81860 -37.97197 -37.05948 -35.05386 -34.40752 -32.55897 -30.78461 -28.81062 -27.69396 -27.30674 -25.09517 -23.41076 -22.48583 -20.54842 -18.91307 -18.44686 -18.17333 -18.01123 -17.62200 -17.10153 -16.25588 -15.96467 -15.65641 -15.36083 -14.95641 -14.69673 -14.42012 -14.15184 -13.69345 -13.48422 -13.41890 -13.06698 -12.99362 -12.85866 -12.71334 -12.58968 -12.20184 -12.12768 -11.61283 -11.32369 -11.19102 -10.69643 -10.51115 -9.94412 -9.37482 -8.40937 -8.15962 -6.32996 0.07741 0.51966 1.40064 1.41598 1.53160 1.82891 2.29517 2.47489 2.75314 2.95786 3.11487 3.47277 3.72841 3.89665 4.24707 4.38676 4.49604 4.62965 4.65974 4.72272 4.85834 4.95347 5.00897 5.03282 5.16568 5.20233 5.42990 5.51167 5.60479 5.64576 5.74249 6.00554 6.13455 6.41995 6.73595 6.74508 6.92672 7.01339 7.26498 7.43278 8.88239 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.005783 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.656780 B = 4840.381722 C = 5555.657652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.591 5.591 13 C 0.091 3.909 14 C 0.548 3.452 15 O -0.600 6.600 16 C -0.217 4.217 17 C -0.071 4.071 18 C 0.033 3.967 19 O -0.504 6.504 20 C -0.065 4.065 21 C -0.183 4.183 22 C 0.248 3.752 23 N -0.859 5.859 24 H 0.046 0.954 25 H 0.020 0.980 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.401 0.599 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.400 0.600 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.364 -7.532 16.564 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.190 1.190 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.319 5.319 13 C -0.052 4.052 14 C 0.338 3.662 15 O -0.484 6.484 16 C -0.226 4.226 17 C -0.090 4.090 18 C -0.013 4.013 19 O -0.315 6.315 20 C -0.084 4.084 21 C -0.206 4.206 22 C 0.138 3.862 23 N -0.398 5.398 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.258 0.742 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.230 0.770 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.789 -7.053 16.426 18.506 hybrid contribution 0.424 0.519 -1.438 1.586 sum 5.212 -6.534 14.988 17.161 Atomic orbital electron populations 1.21883 0.97098 1.00084 1.00040 1.18598 0.91750 0.92295 0.81395 0.96904 1.21590 1.31990 1.13039 0.91137 0.92314 1.25727 0.95031 0.95632 1.01971 1.70017 1.37225 1.23855 1.24435 0.85394 0.78255 0.78467 0.78823 1.19040 1.19880 1.21002 1.48142 1.48338 1.13177 1.22289 1.21783 1.01268 0.80797 1.01341 1.18739 0.78374 0.86354 0.82688 1.90646 1.63473 1.17213 1.77050 1.19172 1.12465 0.98338 0.92581 1.21414 0.96294 0.91588 0.99733 1.18037 1.03433 0.87711 0.92164 1.84857 1.28860 1.24915 1.92880 1.21568 0.96183 0.93779 0.96846 1.20752 1.05054 0.96597 0.98193 1.17945 0.90083 0.86214 0.91987 1.42682 1.65214 1.18876 1.13029 0.93519 0.96099 0.91142 0.92567 0.92582 0.90833 0.90515 0.85852 0.74170 0.82033 0.81996 0.77015 0.75692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.55 8.96 71.98 0.64 -5.91 16 2 C 0.26 13.98 2.63 44.25 0.12 14.09 16 3 H 0.01 0.82 6.91 -2.39 -0.02 0.80 16 4 C -0.54 -29.93 8.37 25.60 0.21 -29.72 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.17 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 8 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 N -0.59 -26.55 2.75 -830.69 -2.29 -28.83 16 13 C 0.09 3.25 8.23 127.77 1.05 4.30 16 14 C 0.55 24.25 6.80 86.67 0.59 24.84 16 15 O -0.60 -30.77 14.55 -4.05 -0.06 -30.83 16 16 C -0.22 -7.47 4.85 -19.99 -0.10 -7.56 16 17 C -0.07 -2.13 7.95 22.62 0.18 -1.95 16 18 C 0.03 0.78 6.69 22.44 0.15 0.93 16 19 O -0.50 -10.38 13.50 -93.64 -1.26 -11.64 16 20 C -0.06 -1.23 9.96 22.39 0.22 -1.01 16 21 C -0.18 -3.69 9.87 22.36 0.22 -3.47 16 22 C 0.25 6.96 6.74 38.65 0.26 7.23 16 23 N -0.86 -22.53 8.93 -50.87 -0.45 -22.98 16 24 H 0.05 2.10 6.67 -2.39 -0.02 2.09 16 25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.06 1.91 6.75 -2.38 -0.02 1.90 16 29 H 0.07 2.62 6.44 -2.39 -0.02 2.61 16 30 H 0.08 2.39 6.83 -2.39 -0.02 2.37 16 31 H 0.12 3.91 6.28 -2.91 -0.02 3.89 16 32 H 0.40 4.59 9.06 -74.06 -0.67 3.92 16 33 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.40 13.02 6.47 -92.71 -0.60 12.42 16 36 H 0.41 7.38 8.84 -92.71 -0.82 6.56 16 Total: -1.00 -71.66 298.78 1.27 -70.39 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.94 Total: 28.13 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 4.00 Total: 3.11 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -2.50 Total: -104.75 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.32 Total: -42.47 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -71.66 1.27 -70.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.876 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds