Wall clock time and date at job start Mon Mar 30 2020 04:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.46881 * 179.97438 * 15 13 12 17 17 C 1.46499 * 120.00191 * 270.00077 * 16 15 13 18 18 C 1.38407 * 119.99833 * 89.99658 * 16 15 13 19 19 N 1.32495 * 119.21829 * 359.73776 * 18 16 15 20 20 C 1.32279 * 120.74013 * 179.71957 * 19 18 16 21 21 C 1.38607 * 119.19665 * 0.53290 * 20 19 18 22 22 C 1.38609 * 118.55905 * 359.74094 * 21 20 19 23 23 N 1.32281 * 119.19381 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 25 25 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 26 26 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 27 27 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 28 28 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 29 29 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 30 30 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 31 31 H 1.08999 * 109.47044 * 89.99931 * 17 16 15 32 32 H 1.09000 * 109.47423 * 209.99864 * 17 16 15 33 33 H 1.08999 * 109.46943 * 329.99933 * 17 16 15 34 34 H 1.08000 * 120.39871 * 180.25211 * 20 19 18 35 35 H 1.07999 * 120.71880 * 179.75327 * 21 20 19 36 36 H 1.07993 * 120.40271 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 7 2.6979 0.2123 -4.7093 17 6 1.5306 0.3764 -5.5792 18 6 3.8468 0.9465 -4.9471 19 7 4.8916 0.7897 -4.1474 20 6 6.0066 1.4719 -4.3502 21 6 6.0692 2.3664 -5.4071 22 6 4.9562 2.5099 -6.2206 23 7 3.8741 1.7929 -5.9660 24 1 -0.3633 0.5473 -0.8698 25 1 -0.3634 -1.0269 -0.0392 26 1 -0.3633 0.4796 0.9088 27 1 0.9967 1.3391 3.4805 28 1 2.2491 -1.6318 -1.1525 29 1 3.6482 -1.1214 -3.3984 30 1 1.9761 -1.5507 -3.8325 31 1 0.8902 1.1645 -5.1830 32 1 1.8602 0.6461 -6.5825 33 1 0.9729 -0.5592 -5.6192 34 1 6.8563 1.3368 -3.6974 35 1 6.9659 2.9391 -5.5928 36 1 4.9725 3.1982 -7.0527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701226686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:18 Heat of formation + Delta-G solvation = 29.817035 kcal Electronic energy + Delta-G solvation = -19693.252803 eV Core-core repulsion = 16599.331884 eV Total energy + Delta-G solvation = -3093.920919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80543 -38.87907 -36.31069 -34.60656 -33.54401 -32.34041 -31.13602 -29.61931 -27.89727 -25.81935 -25.19545 -24.17834 -22.37848 -20.94098 -19.41541 -17.80228 -17.44554 -17.09775 -15.86834 -15.59189 -15.19549 -14.83949 -14.75366 -14.47680 -13.99149 -13.67604 -13.33197 -13.30779 -12.68394 -12.35347 -12.11515 -11.91674 -11.53531 -11.04505 -10.93798 -10.85818 -10.73317 -10.68860 -10.34623 -10.31570 -10.25654 -9.08995 -9.04360 -8.96093 -8.49240 -7.87860 -7.73341 -6.11674 -4.18002 1.30263 1.31163 2.72008 3.25691 3.32767 3.34963 3.45274 4.01312 4.20136 4.30425 4.43026 4.64599 4.81379 5.19909 5.22051 5.29940 5.31490 5.37546 5.55818 5.61092 5.69884 5.86427 5.96447 6.35944 6.77884 6.83129 6.92198 6.99049 7.12216 7.47778 7.51776 7.60076 7.70627 7.90372 8.10965 8.40288 8.71592 8.82725 9.18738 9.48619 10.96493 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.028481 B = 0.004500 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.885341 B = 6220.405540 C = 6717.054784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.709 5.709 13 C 0.486 3.514 14 O -0.546 6.546 15 C 0.109 3.891 16 N -0.565 5.565 17 C 0.105 3.895 18 C 0.575 3.425 19 N -0.564 5.564 20 C 0.194 3.806 21 C -0.303 4.303 22 C 0.189 3.811 23 N -0.571 5.571 24 H 0.016 0.984 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -2.556 -16.317 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.358 5.358 13 C 0.269 3.731 14 O -0.424 6.424 15 C -0.018 4.018 16 N -0.280 5.280 17 C -0.038 4.038 18 C 0.220 3.780 19 N -0.286 5.286 20 C 0.026 3.974 21 C -0.329 4.329 22 C 0.021 3.979 23 N -0.293 5.293 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.181 0.819 35 H 0.158 0.842 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.126 -2.216 -15.985 16.933 hybrid contribution 1.065 -0.312 0.923 1.444 sum 6.192 -2.527 -15.062 16.480 Atomic orbital electron populations 1.22003 0.98856 0.98638 1.00488 1.18702 0.90548 0.94344 0.80135 0.93158 1.21209 1.35282 1.10374 0.90338 0.92012 1.24898 0.95000 0.94703 0.99041 1.69976 1.42192 1.15868 1.23959 0.86476 0.78632 0.79831 0.82417 1.20585 1.19784 1.21146 1.46474 1.65371 1.13492 1.10474 1.20951 0.78921 0.88073 0.85199 1.90657 1.50754 1.15992 1.85033 1.21420 1.04323 0.90915 0.85168 1.45467 1.10608 1.41843 1.30034 1.21643 0.86365 1.01586 0.94172 1.19143 0.86492 0.86689 0.85674 1.67909 1.01014 1.29808 1.29868 1.22918 0.93845 0.87890 0.92768 1.22455 1.02210 1.06592 1.01600 1.22853 0.86863 0.92331 0.95851 1.67863 1.29464 1.10825 1.21185 0.96452 0.95323 0.90508 0.92629 0.78004 0.87073 0.88089 0.92508 0.90250 0.91450 0.81852 0.84235 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.32 37.16 0.35 -3.18 16 2 C 0.26 6.88 2.45 -69.08 -0.17 6.71 16 3 H 0.05 1.55 7.57 -51.93 -0.39 1.15 16 4 C -0.53 -14.35 8.69 -34.44 -0.30 -14.64 16 5 H 0.06 1.58 7.73 -52.49 -0.41 1.17 16 6 C 0.07 1.83 5.21 -17.82 -0.09 1.74 16 7 N -0.88 -25.49 11.92 55.43 0.66 -24.83 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.71 -14.97 5.07 -54.93 -0.28 -15.25 16 13 C 0.49 9.99 7.86 -10.98 -0.09 9.90 16 14 O -0.55 -13.81 16.09 5.56 0.09 -13.72 16 15 C 0.11 1.66 5.93 -5.19 -0.03 1.63 16 16 N -0.57 -8.98 2.46 -185.32 -0.46 -9.44 16 17 C 0.11 1.38 10.48 59.85 0.63 2.00 16 18 C 0.58 9.67 8.17 -322.81 -2.64 7.04 16 19 N -0.56 -9.36 9.12 -13.93 -0.13 -9.49 16 20 C 0.19 2.52 11.30 -17.22 -0.19 2.32 16 21 C -0.30 -3.29 10.16 -39.31 -0.40 -3.68 16 22 C 0.19 2.23 11.30 -17.22 -0.19 2.04 16 23 N -0.57 -8.69 9.11 -13.93 -0.13 -8.82 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 2.08 6.60 -51.93 -0.34 1.74 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.39 6.92 8.53 -40.82 -0.35 6.57 16 29 H 0.11 1.61 7.34 -51.93 -0.38 1.23 16 30 H 0.10 1.16 7.89 -51.93 -0.41 0.75 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.96 7.33 -51.93 -0.38 0.58 16 33 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 34 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -35.13 313.31 -8.41 -43.55 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.74 Total: 5.60 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: -3.13 Total: 11.88 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -0.33 Total: -67.83 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.13 -8.41 -43.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701226686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.362 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds