Wall clock time and date at job start Mon Mar 30 2020 05:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47295 * 2 1 4 4 C 1.46902 * 111.00067 * 69.87246 * 3 2 1 5 5 C 1.50703 * 109.46583 * 71.63364 * 4 3 2 6 6 H 1.08000 * 120.00146 * 5.05120 * 5 4 3 7 7 C 1.37874 * 120.00279 * 185.04599 * 5 4 3 8 8 N 1.31518 * 119.99665 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00311 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47047 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47126 * 120.00206 * 9 7 5 12 12 H 1.48503 * 109.47005 * 240.00076 * 9 7 5 13 13 C 1.46903 * 111.00028 * 305.92496 * 3 2 1 14 14 C 1.53000 * 109.47253 * 286.95577 * 13 3 2 15 15 H 1.09000 * 109.46792 * 306.72625 * 14 13 3 16 16 O 1.42900 * 109.47064 * 66.72461 * 14 13 3 17 17 C 1.50702 * 109.47243 * 186.72702 * 14 13 3 18 18 C 1.38132 * 120.03389 * 264.71885 * 17 14 13 19 19 C 1.38260 * 120.06837 * 179.76747 * 18 17 14 20 20 C 1.38300 * 120.15425 * 0.51485 * 19 18 17 21 21 C 1.38089 * 120.07464 * 359.74095 * 20 19 18 22 22 C 1.38886 * 120.03669 * 85.00038 * 17 14 13 23 23 N 1.39669 * 120.07941 * 359.97438 * 22 17 14 24 24 H 1.09000 * 109.47507 * 306.51300 * 1 2 3 25 25 H 1.09008 * 109.47161 * 66.51161 * 1 2 3 26 26 H 1.09001 * 109.47220 * 186.50471 * 1 2 3 27 27 H 1.09002 * 109.47179 * 239.99984 * 2 1 3 28 28 H 1.08998 * 109.47073 * 119.99867 * 2 1 3 29 29 H 1.09001 * 109.47372 * 191.62887 * 4 3 2 30 30 H 1.08994 * 109.47187 * 311.63821 * 4 3 2 31 31 H 0.97002 * 119.99961 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.47262 * 46.95518 * 13 3 2 33 33 H 1.08998 * 109.47231 * 166.95181 * 13 3 2 34 34 H 0.96692 * 114.00251 * 59.99991 * 16 14 13 35 35 H 1.07998 * 119.96041 * 0.02562 * 18 17 14 36 36 H 1.08003 * 119.91947 * 180.23138 * 19 18 17 37 37 H 1.08005 * 119.96742 * 179.72608 * 20 19 18 38 38 H 1.07995 * 120.03565 * 180.02562 * 21 20 19 39 39 H 0.96998 * 119.99629 * 0.02562 * 23 22 17 40 40 H 0.97003 * 120.00173 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7502 2.0386 1.2877 5 6 2.6605 1.4643 2.3426 6 1 3.4231 0.7508 2.0676 7 6 2.5197 1.8499 3.6588 8 7 1.5907 2.7184 3.9938 9 14 3.6484 1.1386 4.9663 10 1 4.6006 0.1898 4.3353 11 1 4.4037 2.2377 5.6195 12 1 2.8377 0.4223 5.9837 13 6 1.4365 2.1495 -1.1106 14 6 2.0732 1.7017 -2.4278 15 1 3.1583 1.7660 -2.3471 16 8 1.6952 0.3518 -2.7048 17 6 1.5987 2.5956 -3.5445 18 6 0.5230 2.2165 -4.3238 19 6 0.0840 3.0383 -5.3454 20 6 0.7264 4.2368 -5.5976 21 6 1.8057 4.6193 -4.8258 22 6 2.2461 3.7985 -3.7950 23 7 3.3374 4.1823 -3.0124 24 1 -0.3634 0.6115 0.8259 25 1 -0.3634 0.4096 -0.9426 26 1 -0.3634 -1.0210 0.1164 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9305 3.1097 1.1962 30 1 0.7119 1.8678 1.5716 31 1 1.4919 2.9900 4.9198 32 1 0.3615 1.9732 -1.1482 33 1 1.6252 3.2123 -0.9586 34 1 0.7411 0.2200 -2.7898 35 1 0.0218 1.2793 -4.1321 36 1 -0.7596 2.7413 -5.9509 37 1 0.3837 4.8743 -6.3993 38 1 2.3065 5.5555 -5.0230 39 1 3.6442 3.6082 -2.2932 40 1 3.7886 5.0229 -3.1881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051327071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:01 Heat of formation + Delta-G solvation = -20.339690 kcal Electronic energy + Delta-G solvation = -20403.945300 eV Core-core repulsion = 17411.389765 eV Total energy + Delta-G solvation = -2992.555534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91469 -37.78369 -35.63666 -34.51666 -32.54922 -31.42180 -29.66678 -28.81858 -27.97436 -25.67128 -23.58083 -22.77787 -22.08963 -20.81462 -19.34215 -17.55473 -17.05248 -16.35116 -16.13629 -15.32256 -15.14891 -14.78258 -14.21719 -14.10704 -13.81407 -13.71846 -13.44857 -13.00775 -12.83457 -12.39677 -11.94675 -11.60552 -11.39844 -11.19904 -11.13042 -11.02440 -10.78020 -10.69571 -10.58535 -10.44859 -10.22396 -9.99819 -9.37254 -9.09623 -8.68776 -8.41788 -7.45286 -7.13200 -6.00908 -4.01729 1.43600 1.67939 3.31321 3.38927 3.44355 3.87389 3.94537 4.43079 4.64458 4.70464 4.92503 5.07375 5.23398 5.34172 5.44635 5.48055 5.60898 5.66460 5.84814 5.86251 5.94857 6.03675 6.15537 6.21300 6.24758 6.39059 6.53221 6.61354 6.68231 6.72801 6.92915 7.04776 7.31330 7.46625 7.52821 7.79892 7.83850 7.85918 8.13970 8.26036 8.58733 9.07778 9.62584 11.09573 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028253 B = 0.004719 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.811963 B = 5932.041941 C = 6410.717768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 N -0.529 5.529 4 C 0.187 3.813 5 C -0.501 4.501 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.024 3.976 14 C 0.162 3.838 15 H 0.104 0.896 16 O -0.548 6.548 17 C -0.188 4.188 18 C -0.065 4.065 19 C -0.181 4.181 20 C -0.076 4.076 21 C -0.202 4.202 22 C 0.230 3.770 23 N -0.875 5.875 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.001 0.999 31 H 0.259 0.741 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.365 0.635 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.405 0.595 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 1.393 -17.077 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.079 4.079 3 N -0.252 5.252 4 C 0.062 3.938 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.105 4.105 14 C 0.103 3.897 15 H 0.122 0.878 16 O -0.353 6.353 17 C -0.193 4.193 18 C -0.084 4.084 19 C -0.202 4.202 20 C -0.095 4.095 21 C -0.225 4.225 22 C 0.124 3.876 23 N -0.414 5.414 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.213 0.787 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.235 0.765 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.800 1.375 -16.949 17.023 hybrid contribution -0.760 0.158 1.170 1.404 sum -1.560 1.533 -15.779 15.930 Atomic orbital electron populations 1.22390 1.00094 1.01113 1.00827 1.22250 0.91456 0.91451 1.02766 1.62293 1.57069 1.01806 1.04072 1.19807 0.95758 0.93955 0.84265 1.21212 1.16471 1.25064 0.91261 0.91826 1.24991 0.95697 0.95378 0.98636 1.69975 1.33285 1.32826 1.17969 0.86474 0.80690 0.78924 0.81543 1.19630 1.21113 1.21174 1.22785 0.96958 0.98762 0.92028 1.20671 0.99592 0.79849 0.89623 0.87835 1.86613 1.27940 1.27030 1.93736 1.20154 1.00181 0.96818 1.02195 1.20621 0.94747 0.98671 0.94377 1.20801 1.02443 0.96181 1.00738 1.20822 0.94648 0.96040 0.98010 1.20549 1.01624 1.01074 0.99249 1.17558 0.87398 0.92309 0.90329 1.42671 1.34111 1.26201 1.38418 0.92223 0.94007 0.93307 0.90082 0.90715 0.96131 0.98159 0.93090 0.94613 0.91046 0.78691 0.86447 0.86650 0.86510 0.86440 0.76471 0.77551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 9.10 37.16 0.34 -2.89 16 2 C 0.05 0.95 5.45 -3.83 -0.02 0.93 16 3 N -0.53 -11.10 4.61 -236.07 -1.09 -12.19 16 4 C 0.19 4.81 4.63 -4.97 -0.02 4.79 16 5 C -0.50 -14.03 8.38 -34.44 -0.29 -14.32 16 6 H 0.06 1.79 7.71 -52.49 -0.40 1.38 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.02 0.42 4.53 -3.82 -0.02 0.40 16 14 C 0.16 2.43 2.84 -27.88 -0.08 2.35 16 15 H 0.10 1.64 6.82 -51.93 -0.35 1.29 16 16 O -0.55 -8.01 10.09 -35.23 -0.36 -8.36 16 17 C -0.19 -2.56 5.08 -104.42 -0.53 -3.10 16 18 C -0.07 -0.81 9.30 -39.61 -0.37 -1.18 16 19 C -0.18 -2.05 10.04 -39.55 -0.40 -2.45 16 20 C -0.08 -0.84 10.04 -39.61 -0.40 -1.23 16 21 C -0.20 -2.35 9.90 -39.38 -0.39 -2.74 16 22 C 0.23 2.97 6.73 -83.79 -0.56 2.41 16 23 N -0.87 -10.00 8.99 32.41 0.29 -9.71 16 24 H 0.06 1.20 6.28 -51.93 -0.33 0.88 16 25 H 0.04 0.63 5.54 -51.92 -0.29 0.34 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.46 5.75 -51.93 -0.30 1.16 16 28 H 0.07 1.62 7.18 -51.93 -0.37 1.25 16 29 H 0.02 0.57 7.72 -51.93 -0.40 0.16 16 30 H 0.00 0.02 6.16 -51.93 -0.32 -0.30 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 32 H 0.04 0.62 5.66 -51.92 -0.29 0.33 16 33 H 0.07 1.31 7.70 -51.93 -0.40 0.91 16 34 H 0.37 4.37 6.43 45.56 0.29 4.66 16 35 H 0.12 1.24 6.40 -52.49 -0.34 0.90 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.40 4.97 6.94 -40.82 -0.28 4.69 16 40 H 0.40 3.58 8.84 -40.82 -0.36 3.22 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -30.85 315.07 -8.50 -39.35 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.97 Total: 11.10 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.84 Total: -15.59 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.06 Total: -47.91 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.36 Total: -8.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.85 -8.50 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051327071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.006 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds