Wall clock time and date at job start Mon Mar 30 2020 05:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47295 * 2 1 4 4 C 1.46902 * 111.00067 * 69.87246 * 3 2 1 5 5 C 1.50703 * 109.46583 * 71.63364 * 4 3 2 6 6 H 1.08000 * 120.00146 * 5.05120 * 5 4 3 7 7 C 1.37874 * 120.00279 * 185.04599 * 5 4 3 8 8 N 1.31518 * 119.99665 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00311 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47047 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47126 * 120.00206 * 9 7 5 12 12 H 1.48503 * 109.47005 * 240.00076 * 9 7 5 13 13 C 1.46903 * 111.00028 * 305.92496 * 3 2 1 14 14 C 1.53000 * 109.47253 * 286.95577 * 13 3 2 15 15 H 1.09000 * 109.46792 * 306.72625 * 14 13 3 16 16 O 1.42900 * 109.47064 * 66.72461 * 14 13 3 17 17 C 1.50702 * 109.47243 * 186.72702 * 14 13 3 18 18 C 1.38132 * 120.03389 * 264.71885 * 17 14 13 19 19 C 1.38260 * 120.06837 * 179.76747 * 18 17 14 20 20 C 1.38300 * 120.15425 * 0.51485 * 19 18 17 21 21 C 1.38089 * 120.07464 * 359.74095 * 20 19 18 22 22 C 1.38886 * 120.03669 * 85.00038 * 17 14 13 23 23 N 1.39669 * 120.07941 * 359.97438 * 22 17 14 24 24 H 1.09000 * 109.47507 * 306.51300 * 1 2 3 25 25 H 1.09008 * 109.47161 * 66.51161 * 1 2 3 26 26 H 1.09001 * 109.47220 * 186.50471 * 1 2 3 27 27 H 1.09002 * 109.47179 * 239.99984 * 2 1 3 28 28 H 1.08998 * 109.47073 * 119.99867 * 2 1 3 29 29 H 1.09001 * 109.47372 * 191.62887 * 4 3 2 30 30 H 1.08994 * 109.47187 * 311.63821 * 4 3 2 31 31 H 0.97002 * 119.99961 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.47262 * 46.95518 * 13 3 2 33 33 H 1.08998 * 109.47231 * 166.95181 * 13 3 2 34 34 H 0.96692 * 114.00251 * 59.99991 * 16 14 13 35 35 H 1.07998 * 119.96041 * 0.02562 * 18 17 14 36 36 H 1.08003 * 119.91947 * 180.23138 * 19 18 17 37 37 H 1.08005 * 119.96742 * 179.72608 * 20 19 18 38 38 H 1.07995 * 120.03565 * 180.02562 * 21 20 19 39 39 H 0.96998 * 119.99629 * 0.02562 * 23 22 17 40 40 H 0.97003 * 120.00173 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7502 2.0386 1.2877 5 6 2.6605 1.4643 2.3426 6 1 3.4231 0.7508 2.0676 7 6 2.5197 1.8499 3.6588 8 7 1.5907 2.7184 3.9938 9 14 3.6484 1.1386 4.9663 10 1 4.6006 0.1898 4.3353 11 1 4.4037 2.2377 5.6195 12 1 2.8377 0.4223 5.9837 13 6 1.4365 2.1495 -1.1106 14 6 2.0732 1.7017 -2.4278 15 1 3.1583 1.7660 -2.3471 16 8 1.6952 0.3518 -2.7048 17 6 1.5987 2.5956 -3.5445 18 6 0.5230 2.2165 -4.3238 19 6 0.0840 3.0383 -5.3454 20 6 0.7264 4.2368 -5.5976 21 6 1.8057 4.6193 -4.8258 22 6 2.2461 3.7985 -3.7950 23 7 3.3374 4.1823 -3.0124 24 1 -0.3634 0.6115 0.8259 25 1 -0.3634 0.4096 -0.9426 26 1 -0.3634 -1.0210 0.1164 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9305 3.1097 1.1962 30 1 0.7119 1.8678 1.5716 31 1 1.4919 2.9900 4.9198 32 1 0.3615 1.9732 -1.1482 33 1 1.6252 3.2123 -0.9586 34 1 0.7411 0.2200 -2.7898 35 1 0.0218 1.2793 -4.1321 36 1 -0.7596 2.7413 -5.9509 37 1 0.3837 4.8743 -6.3993 38 1 2.3065 5.5555 -5.0230 39 1 3.6442 3.6082 -2.2932 40 1 3.7886 5.0229 -3.1881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051327071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:01 Heat of formation + Delta-G solvation = -42.813783 kcal Electronic energy + Delta-G solvation = -20404.919849 eV Core-core repulsion = 17411.389765 eV Total energy + Delta-G solvation = -2993.530084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95910 -39.13733 -37.03903 -35.41647 -34.66624 -32.50228 -31.10433 -30.16721 -29.27234 -27.32436 -25.04466 -24.49046 -23.03010 -21.91845 -20.96102 -18.56425 -18.35974 -18.04728 -17.29613 -16.91019 -16.65560 -16.12602 -15.78640 -15.30450 -14.96826 -14.75877 -14.59001 -14.44803 -14.16526 -13.97502 -13.48081 -13.18839 -12.79574 -12.73435 -12.64725 -12.57249 -12.40115 -12.05805 -12.02737 -11.77994 -11.65897 -11.49334 -11.34174 -10.61313 -10.59237 -9.64940 -8.87428 -8.36406 -8.18618 -6.28357 0.52081 0.78256 1.39806 1.40513 1.54320 2.40490 2.94319 3.04569 3.13241 3.33423 3.52430 3.95026 4.03053 4.12768 4.27439 4.33744 4.43393 4.46012 4.62742 4.67947 4.71467 4.74223 4.92001 4.96882 5.02908 5.08855 5.17440 5.29057 5.36651 5.45922 5.57408 5.67252 5.71363 5.77909 6.07616 6.10806 6.42478 6.60533 6.68154 6.79687 6.89844 6.95879 7.41415 8.91551 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028253 B = 0.004719 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.811963 B = 5932.041941 C = 6410.717768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 N -0.535 5.535 4 C 0.204 3.796 5 C -0.517 4.517 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.031 3.969 14 C 0.180 3.820 15 H 0.092 0.908 16 O -0.554 6.554 17 C -0.210 4.210 18 C -0.073 4.073 19 C -0.187 4.187 20 C -0.076 4.076 21 C -0.211 4.211 22 C 0.214 3.786 23 N -0.874 5.874 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.046 0.954 29 H -0.006 1.006 30 H -0.025 1.025 31 H 0.263 0.737 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.378 0.622 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.399 0.601 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 0.879 -18.605 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.077 4.077 3 N -0.258 5.258 4 C 0.077 3.923 5 C -0.555 4.555 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.098 4.098 14 C 0.121 3.879 15 H 0.110 0.890 16 O -0.361 6.361 17 C -0.216 4.216 18 C -0.092 4.092 19 C -0.207 4.207 20 C -0.095 4.095 21 C -0.233 4.233 22 C 0.108 3.892 23 N -0.413 5.413 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.012 0.988 30 H -0.008 1.008 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.228 0.772 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.228 0.772 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.909 0.863 -18.507 18.549 hybrid contribution -0.775 0.345 1.548 1.765 sum -1.684 1.208 -16.959 17.085 Atomic orbital electron populations 1.22279 0.98379 1.02052 1.00736 1.22249 0.92908 0.90191 1.02307 1.62214 1.58009 1.02684 1.02912 1.19439 0.93804 0.92605 0.86409 1.21489 1.16688 1.25028 0.92309 0.92297 1.25868 0.97157 0.95595 1.00943 1.70095 1.34885 1.34035 1.18644 0.85383 0.78704 0.78331 0.78506 1.18856 1.20408 1.20508 1.22797 0.97203 0.97631 0.92135 1.20291 0.98631 0.80378 0.88642 0.89049 1.86572 1.29294 1.26690 1.93557 1.20064 1.01640 0.97261 1.02605 1.20890 0.94339 0.99541 0.94409 1.21137 1.02994 0.96084 1.00529 1.21222 0.93912 0.96203 0.98152 1.20849 1.02031 1.01608 0.98860 1.17816 0.87802 0.92565 0.91008 1.42671 1.34014 1.26564 1.38076 0.95637 0.91478 0.91016 0.88016 0.93511 0.98802 1.00765 0.92832 0.94287 0.92414 0.77186 0.84941 0.84383 0.83833 0.84701 0.77180 0.76402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.00 9.10 71.98 0.66 -5.34 16 2 C 0.05 1.98 5.45 86.30 0.47 2.46 16 3 N -0.53 -22.96 4.61 -900.79 -4.15 -27.11 16 4 C 0.20 10.92 4.63 85.56 0.40 11.31 16 5 C -0.52 -29.68 8.38 25.60 0.21 -29.47 16 6 H 0.06 3.37 7.71 -2.91 -0.02 3.35 16 7 C 0.00 0.11 5.46 84.65 0.46 0.57 16 8 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 9 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 C 0.03 1.10 4.53 86.30 0.39 1.49 16 14 C 0.18 5.30 2.84 29.85 0.08 5.39 16 15 H 0.09 2.91 6.82 -2.39 -0.02 2.90 16 16 O -0.55 -15.25 10.09 -148.98 -1.50 -16.75 16 17 C -0.21 -5.51 5.08 -19.73 -0.10 -5.61 16 18 C -0.07 -1.66 9.30 22.25 0.21 -1.45 16 19 C -0.19 -3.72 10.04 22.29 0.22 -3.49 16 20 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 21 C -0.21 -4.50 9.90 22.40 0.22 -4.28 16 22 C 0.21 5.35 6.73 38.21 0.26 5.60 16 23 N -0.87 -19.88 8.99 -51.37 -0.46 -20.34 16 24 H 0.02 1.03 6.28 -2.39 -0.01 1.02 16 25 H 0.07 1.92 5.54 -2.38 -0.01 1.90 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.10 3.54 5.75 -2.39 -0.01 3.53 16 28 H 0.05 2.06 7.18 -2.39 -0.02 2.04 16 29 H -0.01 -0.35 7.72 -2.39 -0.02 -0.37 16 30 H -0.03 -1.47 6.16 -2.39 -0.01 -1.48 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.04 1.35 5.66 -2.38 -0.01 1.34 16 33 H 0.06 2.19 7.70 -2.39 -0.02 2.17 16 34 H 0.38 8.10 6.43 -74.06 -0.48 7.62 16 35 H 0.13 2.45 6.40 -2.91 -0.02 2.43 16 36 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.40 10.04 6.94 -92.71 -0.64 9.39 16 40 H 0.41 7.20 8.84 -92.71 -0.82 6.38 16 Total: -1.00 -67.18 315.07 -0.96 -68.14 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.86 Total: 29.74 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.71 Total: -24.05 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -4.33 Total: -103.98 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -1.50 Total: -16.75 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.18 -0.96 -68.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051327071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.325 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds