Wall clock time and date at job start Mon Mar 30 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47423 * 2 1 4 4 C 1.50696 * 109.47271 * 120.00191 * 2 1 3 5 5 H 1.08007 * 120.00473 * 119.99675 * 4 2 1 6 6 C 1.37873 * 120.00031 * 299.99740 * 4 2 1 7 7 N 1.31519 * 119.99801 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00184 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47084 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47339 * 300.00112 * 8 6 4 11 11 H 1.48495 * 109.47129 * 60.00214 * 8 6 4 12 12 N 1.46907 * 109.46936 * 239.99903 * 2 1 3 13 13 C 1.46896 * 111.00181 * 306.04520 * 12 2 1 14 14 C 1.46898 * 110.99834 * 70.00439 * 12 2 1 15 15 C 1.52998 * 109.47654 * 75.93391 * 14 12 2 16 16 O 1.42900 * 109.46829 * 64.17078 * 15 14 12 17 17 C 1.36012 * 116.99885 * 180.02562 * 16 15 14 18 18 C 1.38504 * 120.08043 * 359.97438 * 17 16 15 19 19 C 1.38281 * 120.02317 * 180.02562 * 18 17 16 20 20 C 1.38266 * 120.17658 * 0.02562 * 19 18 17 21 21 C 1.38217 * 120.15947 * 0.02562 * 20 19 18 22 22 C 1.38730 * 119.98103 * 359.67993 * 21 20 19 23 23 N 1.39966 * 120.09090 * 180.29442 * 22 21 20 24 24 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47009 * 300.00213 * 1 2 3 26 26 H 1.09004 * 109.47089 * 60.00223 * 1 2 3 27 27 H 0.97007 * 120.00030 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46855 * 65.97453 * 13 12 2 29 29 H 1.08998 * 109.47362 * 185.97321 * 13 12 2 30 30 H 1.09001 * 109.47332 * 305.97803 * 13 12 2 31 31 H 1.09005 * 109.46938 * 195.93764 * 14 12 2 32 32 H 1.09006 * 109.46794 * 315.92960 * 14 12 2 33 33 H 1.08997 * 109.47506 * 184.17127 * 15 14 12 34 34 H 1.09001 * 109.47063 * 304.16947 * 15 14 12 35 35 H 1.08008 * 119.98963 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.91680 * 179.97438 * 19 18 17 37 37 H 1.07994 * 119.92022 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.01402 * 179.97438 * 21 20 19 39 39 H 0.97006 * 119.99515 * 180.30251 * 23 22 21 40 40 H 0.96993 * 120.00093 * 0.30385 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 1.8261 -0.4206 5.2203 10 1 1.8259 -2.5203 4.0077 11 1 3.8064 -1.1210 4.0081 12 7 2.0196 -0.6926 -1.1995 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.7504 1.2543 -2.4930 16 8 4.0723 0.7335 -2.6453 17 6 5.0853 1.6366 -2.7354 18 6 4.8127 2.9934 -2.6791 19 6 5.8434 3.9106 -2.7714 20 6 7.1479 3.4775 -2.9206 21 6 7.4283 2.1253 -2.9787 22 6 6.4000 1.1992 -2.8807 23 7 6.6820 -0.1707 -2.9331 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1613 3.4844 28 1 0.3606 -1.9513 -1.4758 29 1 1.8923 -2.5652 -2.1432 30 1 1.6156 -2.5864 -0.3850 31 1 1.8586 -0.5381 -3.2884 32 1 0.7386 0.4942 -2.3674 33 1 2.5066 1.8828 -3.3495 34 1 2.6965 1.8474 -1.5801 35 1 3.7946 3.3352 -2.5638 36 1 5.6288 4.9682 -2.7276 37 1 7.9496 4.1974 -2.9926 38 1 8.4481 1.7896 -3.0957 39 1 5.9614 -0.8170 -2.8688 40 1 7.5978 -0.4738 -3.0337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:12 Heat of formation + Delta-G solvation = -2.903819 kcal Electronic energy + Delta-G solvation = -20280.480713 eV Core-core repulsion = 17288.681255 eV Total energy + Delta-G solvation = -2991.799458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81920 -37.70567 -36.50911 -34.18468 -32.77317 -30.28237 -29.46103 -28.47840 -27.80430 -25.24484 -24.56910 -22.98288 -21.69590 -21.35451 -18.87966 -17.86846 -16.64063 -16.44963 -16.22781 -15.46153 -15.11277 -14.52751 -14.37138 -14.04335 -13.76867 -13.72579 -13.17613 -12.69241 -12.58068 -12.47722 -11.89932 -11.43554 -11.33216 -11.04679 -11.02863 -10.80724 -10.71819 -10.54271 -10.46099 -10.41814 -10.36021 -10.03895 -9.65927 -8.88696 -8.35764 -8.25080 -7.11258 -6.97680 -5.99140 -4.01855 1.67324 1.86712 3.34217 3.38217 3.41706 3.64937 4.10773 4.19413 4.43487 4.95210 5.08717 5.23138 5.32902 5.44860 5.53143 5.61360 5.65400 5.81807 5.86331 6.07400 6.08361 6.20430 6.25870 6.38191 6.39456 6.61844 6.65332 6.80129 6.83708 6.86893 7.04539 7.11189 7.44116 7.54370 7.71093 7.86110 8.01950 8.07001 8.15355 8.39272 8.61338 9.03588 9.62825 11.08227 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.005395 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.607034 B = 5189.199260 C = 5630.437356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.208 3.792 3 H 0.038 0.962 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.528 5.528 13 C 0.037 3.963 14 C 0.051 3.949 15 C 0.074 3.926 16 O -0.298 6.298 17 C 0.070 3.930 18 C -0.168 4.168 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.175 4.175 22 C 0.192 3.808 23 N -0.874 5.874 24 H 0.031 0.969 25 H 0.089 0.911 26 H 0.006 0.994 27 H 0.260 0.740 28 H 0.014 0.986 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.406 0.594 40 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 2.100 -12.101 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.102 3.898 3 H 0.055 0.945 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.203 1.203 12 N -0.251 5.251 13 C -0.111 4.111 14 C -0.077 4.077 15 C -0.002 4.002 16 O -0.211 6.211 17 C 0.020 3.980 18 C -0.187 4.187 19 C -0.162 4.162 20 C -0.136 4.136 21 C -0.199 4.199 22 C 0.087 3.913 23 N -0.415 5.415 24 H 0.050 0.950 25 H 0.107 0.893 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.235 0.765 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.697 1.982 -11.906 14.316 hybrid contribution -0.694 -0.378 0.913 1.207 sum 7.003 1.604 -10.993 13.133 Atomic orbital electron populations 1.22422 1.01010 0.99463 1.00385 1.19339 0.89512 0.94583 0.86346 0.94462 1.21045 1.30315 1.12404 0.89599 0.92068 1.24919 0.95277 0.95166 0.98968 1.69870 1.37167 1.23124 1.23447 0.86593 0.79259 0.79585 0.82159 1.21418 1.20392 1.20270 1.62323 1.58713 1.02204 1.01887 1.22201 0.95835 0.91687 1.01419 1.22081 0.95243 0.95193 0.95222 1.22840 0.80185 0.96955 1.00200 1.86075 1.14511 1.32807 1.87693 1.18570 0.87490 0.88891 1.02999 1.21065 1.00235 0.91759 1.05684 1.20652 0.92467 0.98816 1.04310 1.20674 0.96374 0.94745 1.01853 1.20346 0.97149 0.92607 1.09750 1.17153 0.90253 0.85305 0.98552 1.42303 1.11047 1.03425 1.84696 0.94958 0.89287 0.97518 0.93007 0.96757 0.93949 0.90745 0.91566 0.93014 0.93137 0.91534 0.85710 0.86605 0.86581 0.86173 0.76464 0.77985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.25 37.16 0.31 -3.83 16 2 C 0.21 5.19 2.22 -68.86 -0.15 5.03 16 3 H 0.04 1.02 6.59 -51.93 -0.34 0.68 16 4 C -0.49 -13.61 7.88 -34.44 -0.27 -13.88 16 5 H 0.06 1.70 7.14 -52.48 -0.37 1.33 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.53 -11.26 4.57 -236.29 -1.08 -12.34 16 13 C 0.04 0.72 8.57 60.06 0.51 1.24 16 14 C 0.05 0.92 5.28 -3.83 -0.02 0.90 16 15 C 0.07 1.27 4.93 37.16 0.18 1.45 16 16 O -0.30 -5.38 9.32 -19.78 -0.18 -5.56 16 17 C 0.07 1.18 6.70 -39.08 -0.26 0.91 16 18 C -0.17 -2.60 9.04 -39.47 -0.36 -2.96 16 19 C -0.14 -1.95 10.04 -39.56 -0.40 -2.34 16 20 C -0.12 -1.50 10.04 -39.58 -0.40 -1.90 16 21 C -0.18 -2.32 9.89 -39.41 -0.39 -2.71 16 22 C 0.19 2.91 6.77 -83.56 -0.57 2.34 16 23 N -0.87 -11.41 9.09 32.51 0.30 -11.11 16 24 H 0.03 0.74 6.46 -51.93 -0.34 0.41 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.01 0.13 6.45 -51.93 -0.33 -0.21 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.01 0.27 6.59 -51.93 -0.34 -0.08 16 29 H 0.04 0.72 8.11 -51.93 -0.42 0.29 16 30 H 0.07 1.56 6.72 -51.93 -0.35 1.21 16 31 H 0.07 1.06 7.91 -51.93 -0.41 0.65 16 32 H 0.05 0.91 6.17 -51.93 -0.32 0.59 16 33 H 0.05 0.72 7.66 -51.93 -0.40 0.33 16 34 H 0.07 1.27 6.21 -51.93 -0.32 0.95 16 35 H 0.13 1.82 6.30 -52.48 -0.33 1.49 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.41 5.61 8.19 -40.82 -0.33 5.27 16 40 H 0.39 3.95 8.85 -40.82 -0.36 3.59 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -29.82 317.96 -8.17 -37.99 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.70 Total: 8.84 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.90 Total: -14.26 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.16 Total: -48.40 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.18 Total: -5.56 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.82 -8.17 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.087 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds