Wall clock time and date at job start Mon Mar 30 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47423 * 2 1 4 4 C 1.50696 * 109.47271 * 120.00191 * 2 1 3 5 5 H 1.08007 * 120.00473 * 119.99675 * 4 2 1 6 6 C 1.37873 * 120.00031 * 299.99740 * 4 2 1 7 7 N 1.31519 * 119.99801 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00184 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47084 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47339 * 300.00112 * 8 6 4 11 11 H 1.48495 * 109.47129 * 60.00214 * 8 6 4 12 12 N 1.46907 * 109.46936 * 239.99903 * 2 1 3 13 13 C 1.46896 * 111.00181 * 306.04520 * 12 2 1 14 14 C 1.46898 * 110.99834 * 70.00439 * 12 2 1 15 15 C 1.52998 * 109.47654 * 75.93391 * 14 12 2 16 16 O 1.42900 * 109.46829 * 64.17078 * 15 14 12 17 17 C 1.36012 * 116.99885 * 180.02562 * 16 15 14 18 18 C 1.38504 * 120.08043 * 359.97438 * 17 16 15 19 19 C 1.38281 * 120.02317 * 180.02562 * 18 17 16 20 20 C 1.38266 * 120.17658 * 0.02562 * 19 18 17 21 21 C 1.38217 * 120.15947 * 0.02562 * 20 19 18 22 22 C 1.38730 * 119.98103 * 359.67993 * 21 20 19 23 23 N 1.39966 * 120.09090 * 180.29442 * 22 21 20 24 24 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47009 * 300.00213 * 1 2 3 26 26 H 1.09004 * 109.47089 * 60.00223 * 1 2 3 27 27 H 0.97007 * 120.00030 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46855 * 65.97453 * 13 12 2 29 29 H 1.08998 * 109.47362 * 185.97321 * 13 12 2 30 30 H 1.09001 * 109.47332 * 305.97803 * 13 12 2 31 31 H 1.09005 * 109.46938 * 195.93764 * 14 12 2 32 32 H 1.09006 * 109.46794 * 315.92960 * 14 12 2 33 33 H 1.08997 * 109.47506 * 184.17127 * 15 14 12 34 34 H 1.09001 * 109.47063 * 304.16947 * 15 14 12 35 35 H 1.08008 * 119.98963 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.91680 * 179.97438 * 19 18 17 37 37 H 1.07994 * 119.92022 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.01402 * 179.97438 * 21 20 19 39 39 H 0.97006 * 119.99515 * 180.30251 * 23 22 21 40 40 H 0.96993 * 120.00093 * 0.30385 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 1.8261 -0.4206 5.2203 10 1 1.8259 -2.5203 4.0077 11 1 3.8064 -1.1210 4.0081 12 7 2.0196 -0.6926 -1.1995 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.7504 1.2543 -2.4930 16 8 4.0723 0.7335 -2.6453 17 6 5.0853 1.6366 -2.7354 18 6 4.8127 2.9934 -2.6791 19 6 5.8434 3.9106 -2.7714 20 6 7.1479 3.4775 -2.9206 21 6 7.4283 2.1253 -2.9787 22 6 6.4000 1.1992 -2.8807 23 7 6.6820 -0.1707 -2.9331 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1613 3.4844 28 1 0.3606 -1.9513 -1.4758 29 1 1.8923 -2.5652 -2.1432 30 1 1.6156 -2.5864 -0.3850 31 1 1.8586 -0.5381 -3.2884 32 1 0.7386 0.4942 -2.3674 33 1 2.5066 1.8828 -3.3495 34 1 2.6965 1.8474 -1.5801 35 1 3.7946 3.3352 -2.5638 36 1 5.6288 4.9682 -2.7276 37 1 7.9496 4.1974 -2.9926 38 1 8.4481 1.7896 -3.0957 39 1 5.9614 -0.8170 -2.8688 40 1 7.5978 -0.4738 -3.0337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:11 Heat of formation + Delta-G solvation = -22.869710 kcal Electronic energy + Delta-G solvation = -20281.346499 eV Core-core repulsion = 17288.681255 eV Total energy + Delta-G solvation = -2992.665244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99068 -39.20799 -37.90665 -35.23989 -34.77156 -31.75028 -30.70862 -30.17005 -28.94694 -27.30696 -26.11591 -24.46368 -22.80910 -22.69313 -20.60277 -19.07812 -18.28368 -17.72598 -17.51007 -16.96649 -16.88101 -15.93626 -15.64954 -15.45674 -15.35754 -14.91312 -14.54003 -14.38938 -13.93004 -13.78113 -13.63951 -13.15736 -12.81255 -12.61155 -12.56210 -12.45921 -12.35698 -12.21421 -12.07131 -11.97385 -11.67949 -11.46988 -11.35791 -10.90484 -10.46669 -9.36092 -8.78771 -8.10394 -8.08064 -6.19839 0.57249 0.77441 1.40877 1.42568 1.49895 2.40401 2.44344 3.02095 3.16816 3.18763 3.39454 3.97049 4.12151 4.18020 4.31160 4.38965 4.48915 4.57540 4.62260 4.65020 4.76955 4.80895 4.83229 4.91008 4.95047 5.04784 5.16802 5.21028 5.32481 5.53639 5.55726 5.71385 5.76910 5.81605 6.01819 6.24094 6.41662 6.51984 6.75781 6.85681 6.93335 7.11929 7.48873 8.95544 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.005395 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.607034 B = 5189.199260 C = 5630.437356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.005 0.995 4 C -0.511 4.511 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.284 1.284 10 H -0.270 1.270 11 H -0.277 1.277 12 N -0.541 5.541 13 C 0.041 3.959 14 C 0.053 3.947 15 C 0.079 3.921 16 O -0.314 6.314 17 C 0.032 3.968 18 C -0.182 4.182 19 C -0.152 4.152 20 C -0.113 4.113 21 C -0.176 4.176 22 C 0.176 3.824 23 N -0.869 5.869 24 H 0.034 0.966 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.260 0.740 28 H 0.021 0.979 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.401 0.599 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 1.989 -13.028 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.023 0.977 4 C -0.549 4.549 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.209 1.209 10 H -0.195 1.195 11 H -0.203 1.203 12 N -0.265 5.265 13 C -0.108 4.108 14 C -0.075 4.075 15 C 0.003 3.997 16 O -0.228 6.228 17 C -0.017 4.017 18 C -0.201 4.201 19 C -0.172 4.172 20 C -0.132 4.132 21 C -0.199 4.199 22 C 0.071 3.929 23 N -0.411 5.411 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.141 0.859 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.230 0.770 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 8.940 1.858 -12.852 15.765 hybrid contribution -0.997 -0.296 1.131 1.536 sum 7.944 1.562 -11.721 14.245 Atomic orbital electron populations 1.22216 1.00302 0.99376 1.00048 1.19046 0.89853 0.92897 0.87343 0.97714 1.21328 1.30252 1.12283 0.91071 0.92996 1.25649 0.95516 0.95870 1.01690 1.69998 1.37987 1.24178 1.23936 0.85663 0.78504 0.78879 0.78892 1.20907 1.19484 1.20307 1.62198 1.59141 1.03105 1.02013 1.22186 0.96432 0.90654 1.01482 1.22165 0.95630 0.95412 0.94334 1.22745 0.80346 0.96654 0.99929 1.86013 1.14829 1.33634 1.88314 1.18916 0.87936 0.89385 1.05446 1.21246 1.00945 0.91874 1.06059 1.20986 0.92587 0.99667 1.03963 1.21114 0.96844 0.95300 0.99895 1.20746 0.97974 0.92617 1.08606 1.17473 0.90202 0.86443 0.98801 1.42277 1.11728 1.02710 1.84374 0.94728 0.92128 0.95274 0.93055 0.96097 0.91069 0.92882 0.89200 0.92569 0.90388 0.94523 0.85862 0.84494 0.83364 0.83422 0.77042 0.76389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.25 71.98 0.59 -7.09 16 2 C 0.22 10.95 2.22 44.17 0.10 11.05 16 3 H 0.01 0.28 6.59 -2.39 -0.02 0.27 16 4 C -0.51 -28.61 7.88 25.60 0.20 -28.41 16 5 H 0.05 2.94 7.14 -2.91 -0.02 2.92 16 6 C 0.01 0.62 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 8 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 N -0.54 -23.02 4.57 -901.47 -4.12 -27.14 16 13 C 0.04 1.54 8.57 127.69 1.09 2.63 16 14 C 0.05 1.84 5.28 86.30 0.46 2.29 16 15 C 0.08 2.72 4.93 71.98 0.35 3.08 16 16 O -0.31 -11.43 9.32 -93.68 -0.87 -12.31 16 17 C 0.03 1.07 6.70 22.59 0.15 1.23 16 18 C -0.18 -5.63 9.04 22.34 0.20 -5.43 16 19 C -0.15 -3.93 10.04 22.29 0.22 -3.70 16 20 C -0.11 -2.59 10.04 22.27 0.22 -2.37 16 21 C -0.18 -4.28 9.89 22.38 0.22 -4.06 16 22 C 0.18 5.18 6.77 38.22 0.26 5.44 16 23 N -0.87 -21.93 9.09 -51.05 -0.46 -22.40 16 24 H 0.03 1.59 6.46 -2.39 -0.02 1.58 16 25 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 26 H 0.03 1.22 6.45 -2.39 -0.02 1.20 16 27 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 28 H 0.02 0.75 6.59 -2.39 -0.02 0.73 16 29 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 30 H 0.05 2.21 6.72 -2.39 -0.02 2.20 16 31 H 0.09 2.70 7.91 -2.38 -0.02 2.68 16 32 H 0.06 1.90 6.17 -2.38 -0.01 1.89 16 33 H 0.08 2.20 7.66 -2.39 -0.02 2.18 16 34 H 0.04 1.47 6.21 -2.39 -0.01 1.45 16 35 H 0.12 3.68 6.30 -2.91 -0.02 3.66 16 36 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.40 10.95 8.19 -92.70 -0.76 10.19 16 40 H 0.41 7.58 8.85 -92.71 -0.82 6.76 16 Total: -1.00 -64.68 317.96 0.83 -63.86 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.52 Total: 28.86 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 4.53 Total: -24.27 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -4.34 Total: -102.83 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.87 Total: -12.31 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.68 0.83 -63.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.989 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds