Wall clock time and date at job start Mon Mar 30 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99599 * 2 1 4 4 C 1.53005 * 109.46841 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47137 * 67.26050 * 4 3 2 6 6 C 1.46902 * 111.00211 * 290.52829 * 5 4 3 7 7 C 1.50707 * 109.47285 * 299.82591 * 6 5 4 8 8 H 1.08004 * 119.99661 * 354.87097 * 7 6 5 9 9 C 1.37870 * 120.00055 * 174.86525 * 7 6 5 10 10 N 1.31512 * 120.00289 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99887 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47305 * 90.00319 * 11 9 7 13 13 H 1.48506 * 109.46809 * 210.00501 * 11 9 7 14 14 H 1.48501 * 109.46916 * 329.99989 * 11 9 7 15 15 C 1.46894 * 111.00463 * 54.48457 * 5 4 3 16 16 C 1.50706 * 109.47126 * 66.04341 * 15 5 4 17 17 C 1.38282 * 119.92301 * 89.99895 * 16 15 5 18 18 C 1.38102 * 120.07578 * 180.02562 * 17 16 15 19 19 C 1.38911 * 119.92417 * 0.02562 * 18 17 16 20 20 N 1.39678 * 120.07770 * 179.97438 * 19 18 17 21 21 C 1.38920 * 119.84811 * 0.24859 * 19 18 17 22 22 C 1.38103 * 119.92487 * 359.49633 * 21 19 18 23 23 H 1.08999 * 109.47443 * 60.00062 * 1 2 3 24 24 H 1.09002 * 109.46976 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47474 * 300.00052 * 1 2 3 26 26 H 1.08996 * 109.46889 * 60.00178 * 3 2 1 27 27 H 1.09004 * 109.47547 * 299.99816 * 3 2 1 28 28 H 1.08999 * 109.46751 * 307.25562 * 4 3 2 29 29 H 1.08999 * 109.46911 * 187.26154 * 4 3 2 30 30 H 1.09004 * 109.47035 * 59.82303 * 6 5 4 31 31 H 1.08993 * 109.47472 * 179.82468 * 6 5 4 32 32 H 0.97005 * 120.00424 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.46881 * 306.05032 * 15 5 4 34 34 H 1.08997 * 109.47383 * 186.04266 * 15 5 4 35 35 H 1.07999 * 119.96419 * 0.04793 * 17 16 15 36 36 H 1.07996 * 120.04052 * 179.97438 * 18 17 16 37 37 H 0.96996 * 119.99295 * 0.02562 * 20 19 18 38 38 H 0.96999 * 119.99999 * 179.72154 * 20 19 18 39 39 H 1.08003 * 120.03057 * 179.72500 * 21 19 18 40 40 H 1.07995 * 119.96245 * 180.24484 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9807 0.6126 -1.2782 6 6 3.5901 -0.7993 -1.3875 7 6 4.2203 -1.5832 -0.2652 8 1 4.9136 -1.1005 0.4078 9 6 3.9119 -2.9165 -0.0976 10 7 3.0680 -3.5043 -0.9173 11 14 4.6925 -3.8880 1.2939 12 1 3.8370 -3.7939 2.5041 13 1 4.8248 -5.3111 0.8906 14 1 6.0363 -3.3313 1.5931 15 6 3.4645 1.3909 -2.4121 16 6 4.0818 2.7657 -2.4003 17 6 5.2647 2.9966 -3.0782 18 6 5.8334 4.2550 -3.0691 19 6 5.2160 5.2894 -2.3773 20 7 5.7887 6.5634 -2.3655 21 6 4.0307 5.0526 -1.6926 22 6 3.4647 3.7930 -1.7103 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6885 1.8463 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 3.8488 0.5357 0.8171 29 1 3.9781 2.1722 0.1292 30 1 2.5051 -0.8820 -1.3239 31 1 3.9294 -1.1972 -2.3438 32 1 2.8513 -4.4425 -0.7996 33 1 2.3812 1.4784 -2.3294 34 1 3.7184 0.8867 -3.3445 35 1 5.7442 2.1919 -3.6158 36 1 6.7575 4.4346 -3.5984 37 1 6.6182 6.7265 -2.8410 38 1 5.3545 7.2858 -1.8855 39 1 3.5506 5.8536 -1.1501 40 1 2.5412 3.6092 -1.1815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109371801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:23 Heat of formation + Delta-G solvation = -4.929908 kcal Electronic energy + Delta-G solvation = -20402.562454 eV Core-core repulsion = 17410.675138 eV Total energy + Delta-G solvation = -2991.887316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.41207 -37.88860 -35.85199 -34.16646 -32.31579 -30.69312 -29.65729 -28.77535 -26.40089 -25.69245 -23.97720 -22.54999 -22.50278 -20.97535 -19.27584 -16.96209 -16.82103 -16.25295 -15.90420 -15.70312 -15.05797 -14.54036 -14.22964 -14.13254 -13.84125 -13.50917 -13.21279 -13.03167 -12.84032 -12.24602 -11.82247 -11.52325 -11.19963 -11.12104 -10.95935 -10.91208 -10.67340 -10.52727 -10.48652 -10.23658 -9.97300 -9.65983 -8.95986 -8.86773 -8.64866 -8.20739 -7.31227 -6.89640 -5.80527 -3.77665 1.69954 1.86613 3.43673 3.49068 3.53330 3.90415 4.11998 4.50947 4.61181 5.07845 5.20274 5.28571 5.42350 5.56291 5.61086 5.66849 5.74993 5.75695 5.85926 5.90705 5.99412 6.00336 6.15715 6.22034 6.33890 6.34272 6.47686 6.53037 6.69816 6.90606 7.11170 7.13339 7.49845 7.58795 7.75972 7.85927 7.95725 7.99914 8.27813 8.44530 8.79771 9.28142 9.83048 11.30925 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023579 B = 0.005210 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.234053 B = 5373.304219 C = 5991.604995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.063 3.937 5 N -0.526 5.526 6 C 0.181 3.819 7 C -0.490 4.490 8 H 0.057 0.943 9 C 0.058 3.942 10 N -0.898 5.898 11 Si 0.889 3.111 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.089 3.911 16 C -0.113 4.113 17 C -0.053 4.053 18 C -0.198 4.198 19 C 0.201 3.799 20 N -0.885 5.885 21 C -0.200 4.200 22 C -0.072 4.072 23 H 0.028 0.972 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.016 0.984 32 H 0.256 0.744 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.394 0.606 38 H 0.394 0.606 39 H 0.113 0.887 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 17.517 -2.338 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.260 6.260 3 C -0.058 4.058 4 C -0.066 4.066 5 N -0.249 5.249 6 C 0.057 3.943 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.539 5.539 11 Si 0.717 3.283 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.201 1.201 15 C -0.039 4.039 16 C -0.116 4.116 17 C -0.072 4.072 18 C -0.221 4.221 19 C 0.098 3.902 20 N -0.425 5.425 21 C -0.222 4.222 22 C -0.091 4.091 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.222 0.778 38 H 0.221 0.779 39 H 0.131 0.869 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.055 17.103 -2.394 17.270 hybrid contribution -0.608 -0.017 0.850 1.045 sum -0.553 17.086 -1.544 17.164 Atomic orbital electron populations 1.22671 0.83840 1.02218 0.98209 1.88492 1.17225 1.25715 1.94548 1.23430 0.97807 0.86027 0.98504 1.22190 0.89166 0.99769 0.95469 1.62352 1.58287 1.05016 0.99252 1.20040 0.97128 0.80479 0.96697 1.21057 1.24685 0.94264 1.12865 0.92523 1.24856 0.95409 0.97719 0.96190 1.69961 1.34992 1.11317 1.37614 0.86653 0.79652 0.79217 0.82736 1.21005 1.21575 1.20063 1.21002 0.96071 0.90393 0.96386 1.19757 0.96543 0.95386 0.99896 1.20800 0.94017 0.95501 0.96854 1.20531 1.02133 0.93164 1.06248 1.17732 0.92456 0.85508 0.94473 1.42398 1.29451 1.08849 1.61822 1.20459 0.97471 0.97968 1.06325 1.20831 0.98993 0.92023 0.97237 0.95342 0.90009 0.95418 0.94811 0.93961 0.88927 0.91371 0.94525 0.96597 0.93442 0.94844 0.91019 0.86012 0.86782 0.77838 0.77902 0.86931 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.39 7.57 -35.23 -0.27 -7.65 16 3 C 0.02 0.38 5.17 37.16 0.19 0.57 16 4 C 0.06 1.26 5.18 -3.83 -0.02 1.24 16 5 N -0.53 -11.53 4.74 -237.52 -1.13 -12.65 16 6 C 0.18 4.78 4.27 -4.97 -0.02 4.76 16 7 C -0.49 -14.03 8.22 -34.44 -0.28 -14.32 16 8 H 0.06 1.63 6.97 -52.48 -0.37 1.26 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 11 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.09 1.66 4.80 -4.98 -0.02 1.64 16 16 C -0.11 -1.83 4.89 -104.59 -0.51 -2.34 16 17 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 18 C -0.20 -2.62 9.90 -39.38 -0.39 -3.01 16 19 C 0.20 2.49 6.76 -83.78 -0.57 1.92 16 20 N -0.89 -7.76 9.09 32.41 0.29 -7.47 16 21 C -0.20 -2.57 9.90 -39.38 -0.39 -2.96 16 22 C -0.07 -1.04 8.02 -39.61 -0.32 -1.35 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.72 4.45 -51.93 -0.23 0.49 16 28 H 0.09 2.09 6.33 -51.93 -0.33 1.76 16 29 H 0.07 1.23 6.53 -51.93 -0.34 0.89 16 30 H 0.04 1.04 5.29 -51.93 -0.27 0.76 16 31 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 33 H 0.03 0.62 5.66 -51.93 -0.29 0.33 16 34 H 0.07 1.34 7.95 -51.93 -0.41 0.93 16 35 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.39 2.76 8.84 -40.82 -0.36 2.40 16 38 H 0.39 2.72 8.84 -40.82 -0.36 2.36 16 39 H 0.11 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.11 1.57 6.17 -52.49 -0.32 1.24 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -32.21 318.93 -8.08 -40.29 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.80 Total: 3.69 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.70 Total: -11.83 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.09 Total: -46.62 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.27 Total: -7.65 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.21 -8.08 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109371801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.357 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds