Wall clock time and date at job start Mon Mar 30 2020 04:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47330 * 2 1 4 4 C 1.53001 * 109.47228 * 119.99975 * 2 1 3 5 5 H 1.09000 * 109.47100 * 297.11410 * 4 2 1 6 6 C 1.53008 * 109.47290 * 177.11338 * 4 2 1 7 7 O 1.42904 * 109.46947 * 305.19386 * 6 4 2 8 8 N 1.46496 * 109.46986 * 57.11239 * 4 2 1 9 9 C 1.39855 * 120.00026 * 204.99549 * 8 4 2 10 10 C 1.39594 * 119.83914 * 359.73011 * 9 8 4 11 11 C 1.38060 * 120.55069 * 179.75566 * 10 9 8 12 12 C 1.38737 * 120.21619 * 0.51410 * 11 10 9 13 13 N 1.38862 * 120.16022 * 179.72165 * 12 11 10 14 14 C 1.41554 * 119.67687 * 359.74466 * 12 11 10 15 15 C 1.41029 * 120.26982 * 179.97438 * 14 12 11 16 16 H 1.07995 * 119.99720 * 26.52579 * 15 14 12 17 17 C 1.39887 * 119.99864 * 206.53119 * 15 14 12 18 18 N 1.30905 * 120.00273 * 15.23398 * 17 15 14 19 19 Si 1.86797 * 120.00013 * 195.23287 * 17 15 14 20 20 H 1.48496 * 109.47316 * 60.00011 * 19 17 15 21 21 H 1.48500 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47136 * 300.00207 * 19 17 15 23 23 C 1.38007 * 119.83873 * 179.97438 * 9 8 4 24 24 H 1.09006 * 109.46827 * 299.99975 * 1 2 3 25 25 H 1.09000 * 109.46804 * 59.99606 * 1 2 3 26 26 H 1.08991 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47492 * 239.99826 * 2 1 3 28 28 H 1.08997 * 109.47041 * 65.80138 * 3 2 1 29 29 H 1.09004 * 109.46818 * 185.80081 * 3 2 1 30 30 H 1.09000 * 109.46577 * 305.80222 * 3 2 1 31 31 H 1.08992 * 109.47170 * 185.19267 * 6 4 2 32 32 H 1.09003 * 109.46664 * 65.19089 * 6 4 2 33 33 H 0.96691 * 113.99603 * 179.97438 * 7 6 4 34 34 H 0.97002 * 120.00342 * 25.00761 * 8 4 2 35 35 H 1.08005 * 119.72631 * 0.02562 * 10 9 8 36 36 H 1.07998 * 119.89139 * 180.25914 * 11 10 9 37 37 H 0.97001 * 120.00397 * 180.02562 * 13 12 11 38 38 H 0.97007 * 120.00157 * 0.02562 * 13 12 11 39 39 H 0.97004 * 120.00095 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.11630 * 359.96045 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7195 -0.1784 2.1385 6 6 3.5684 -0.7845 1.2135 7 8 3.9916 -1.3888 -0.0104 8 7 1.4957 -2.0809 1.2845 9 6 1.3630 -2.7495 2.5057 10 6 1.7556 -2.1203 3.6883 11 6 1.6264 -2.7648 4.9024 12 6 1.1134 -4.0526 4.9582 13 7 0.9894 -4.7019 6.1794 14 6 0.7174 -4.7016 3.7641 15 6 0.1947 -6.0108 3.8063 16 1 -0.3006 -6.3660 4.6977 17 6 0.3181 -6.8493 2.6934 18 7 1.1598 -6.5482 1.7371 19 14 -0.7181 -8.3987 2.5718 20 1 -2.1575 -8.0341 2.5884 21 1 -0.4013 -9.1082 1.3064 22 1 -0.4190 -9.2860 3.7245 23 6 0.8494 -4.0301 2.5351 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.7640 1.9255 0.9373 29 1 3.1251 1.4442 -0.1039 30 1 1.5943 1.9854 -0.8335 31 1 3.9272 -1.3774 2.0546 32 1 3.9753 0.2245 1.2802 33 1 4.9514 -1.4614 -0.1018 34 1 1.2275 -2.5175 0.4609 35 1 2.1596 -1.1193 3.6538 36 1 1.9296 -2.2664 5.8113 37 1 0.6307 -5.6025 6.2157 38 1 1.2614 -4.2550 6.9962 39 1 1.2456 -7.1298 0.9655 40 1 0.5498 -4.5150 1.6178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127462801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:43 Heat of formation + Delta-G solvation = -38.276650 kcal Electronic energy + Delta-G solvation = -20368.386739 eV Core-core repulsion = 17375.053400 eV Total energy + Delta-G solvation = -2993.333339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.60869 -37.28152 -35.29325 -33.94497 -33.39792 -31.15156 -29.40933 -28.35300 -27.04794 -25.47859 -24.75474 -22.53283 -21.28485 -19.71746 -19.35499 -17.26344 -16.78089 -16.12785 -15.44957 -15.12065 -14.96262 -14.68143 -14.51806 -13.98669 -13.19361 -12.88716 -12.66847 -12.39758 -12.30376 -12.04381 -11.91629 -11.75610 -11.60282 -11.27186 -11.09811 -10.98186 -10.78482 -10.62972 -10.39045 -10.24066 -9.84269 -9.69807 -9.55361 -9.25812 -9.01494 -7.69484 -7.17490 -6.56290 -5.46816 -4.03176 2.95472 3.15090 3.17776 3.34463 3.52647 4.06549 4.41191 4.68568 4.86827 4.98115 5.15502 5.33030 5.45666 5.62183 5.65709 5.72785 5.85106 5.94343 5.98982 6.00583 6.10142 6.15371 6.33322 6.40515 6.52656 6.60996 6.67650 7.16903 7.19914 7.36357 7.54508 7.75427 7.90794 7.93239 8.05443 8.18536 8.50458 8.81599 8.96348 9.00746 9.05180 9.29740 9.38512 10.42223 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.005668 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.563744 B = 4938.671510 C = 5566.760011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.142 4.142 4 C 0.172 3.828 5 H 0.081 0.919 6 C 0.057 3.943 7 O -0.564 6.564 8 N -0.747 5.747 9 C 0.182 3.818 10 C -0.260 4.260 11 C -0.152 4.152 12 C 0.083 3.917 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.465 4.465 16 H 0.070 0.930 17 C 0.076 3.924 18 N -0.799 5.799 19 Si 0.902 3.098 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.200 4.200 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.369 0.631 34 H 0.389 0.611 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.388 0.612 38 H 0.373 0.627 39 H 0.275 0.725 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 9.697 -2.464 10.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.200 4.200 4 C 0.064 3.936 5 H 0.099 0.901 6 C -0.022 4.022 7 O -0.367 6.367 8 N -0.380 5.380 9 C 0.083 3.917 10 C -0.284 4.284 11 C -0.177 4.177 12 C -0.018 4.018 13 N -0.432 5.432 14 C 0.091 3.909 15 C -0.497 4.497 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.426 5.426 19 Si 0.727 3.273 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.224 4.224 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.214 0.786 34 H 0.223 0.777 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.216 0.784 38 H 0.198 0.802 39 H 0.086 0.914 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.752 9.754 -2.803 10.299 hybrid contribution 0.248 -1.042 0.102 1.076 sum 2.000 8.712 -2.701 9.338 Atomic orbital electron populations 1.21792 0.95088 1.02365 1.00816 1.21255 0.95808 0.95754 0.99062 1.21813 1.00882 0.95888 1.01426 1.20706 0.89850 0.85531 0.97484 0.90114 1.22885 0.97338 0.95288 0.86711 1.86496 1.26532 1.84139 1.39573 1.44281 1.73219 1.14092 1.06385 1.17528 0.97727 0.92024 0.84415 1.19598 1.17646 0.99709 0.91483 1.19688 1.07718 0.94394 0.95877 1.17857 1.04307 0.92969 0.86674 1.41803 1.77293 1.19145 1.04967 1.16969 0.92282 0.92484 0.89145 1.19091 1.33917 0.97165 0.99486 0.91225 1.25741 0.93918 0.99116 0.95170 1.69875 1.27955 1.36723 1.08061 0.86493 0.81231 0.81499 0.78075 1.19196 1.20638 1.19413 1.20488 1.10877 0.92289 0.98777 0.92962 0.93443 0.91986 0.90256 0.92891 0.92713 0.92867 0.93104 0.94425 0.78620 0.77730 0.89894 0.89933 0.78380 0.80182 0.91417 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.00 37.16 0.33 -1.59 16 2 C -0.10 -1.36 2.39 -90.62 -0.22 -1.58 16 3 C -0.14 -1.59 8.75 37.16 0.33 -1.27 16 4 C 0.17 2.75 1.64 -67.93 -0.11 2.64 16 5 H 0.08 1.33 6.48 -51.93 -0.34 1.00 16 6 C 0.06 0.86 6.34 37.16 0.24 1.10 16 7 O -0.56 -8.45 12.67 -35.23 -0.45 -8.89 16 8 N -0.75 -14.64 4.47 -52.17 -0.23 -14.87 16 9 C 0.18 4.25 6.63 -83.78 -0.56 3.70 16 10 C -0.26 -5.90 8.83 -39.14 -0.35 -6.24 16 11 C -0.15 -3.52 9.86 -39.46 -0.39 -3.91 16 12 C 0.08 2.03 6.79 -83.23 -0.56 1.46 16 13 N -0.89 -18.45 8.98 32.74 0.29 -18.15 16 14 C 0.10 2.59 5.57 -106.66 -0.59 1.99 16 15 C -0.47 -12.38 8.48 -37.91 -0.32 -12.70 16 16 H 0.07 1.76 6.71 -52.49 -0.35 1.41 16 17 C 0.08 1.96 5.18 -17.33 -0.09 1.87 16 18 N -0.80 -21.30 10.94 55.55 0.61 -20.70 16 19 Si 0.90 19.24 29.59 -169.99 -5.03 14.21 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.20 -5.26 8.49 -38.75 -0.33 -5.59 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.93 7.26 -51.93 -0.38 0.55 16 27 H 0.08 1.17 7.46 -51.93 -0.39 0.78 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.59 6.93 -51.93 -0.36 0.23 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.87 7.78 -51.93 -0.40 0.47 16 32 H 0.04 0.47 6.91 -51.93 -0.36 0.11 16 33 H 0.37 3.94 9.12 45.56 0.42 4.35 16 34 H 0.39 7.72 8.21 -40.82 -0.34 7.38 16 35 H 0.08 1.69 6.16 -52.48 -0.32 1.37 16 36 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.39 7.92 7.06 -40.82 -0.29 7.63 16 38 H 0.37 6.55 8.83 -40.82 -0.36 6.19 16 39 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 40 H 0.12 3.22 6.21 -52.49 -0.33 2.90 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -29.30 319.95 -7.65 -36.95 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -5.04 Total: 26.74 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.62 Total: -20.10 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.67 Total: -53.72 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.45 Total: -8.89 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.30 -7.65 -36.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127462801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.330 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds