Wall clock time and date at job start Mon Mar 30 2020 04:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47330 * 2 1 4 4 C 1.53001 * 109.47228 * 119.99975 * 2 1 3 5 5 H 1.09000 * 109.47100 * 297.11410 * 4 2 1 6 6 C 1.53008 * 109.47290 * 177.11338 * 4 2 1 7 7 O 1.42904 * 109.46947 * 305.19386 * 6 4 2 8 8 N 1.46496 * 109.46986 * 57.11239 * 4 2 1 9 9 C 1.39855 * 120.00026 * 204.99549 * 8 4 2 10 10 C 1.39594 * 119.83914 * 359.73011 * 9 8 4 11 11 C 1.38060 * 120.55069 * 179.75566 * 10 9 8 12 12 C 1.38737 * 120.21619 * 0.51410 * 11 10 9 13 13 N 1.38862 * 120.16022 * 179.72165 * 12 11 10 14 14 C 1.41554 * 119.67687 * 359.74466 * 12 11 10 15 15 C 1.41029 * 120.26982 * 179.97438 * 14 12 11 16 16 H 1.07995 * 119.99720 * 26.52579 * 15 14 12 17 17 C 1.39887 * 119.99864 * 206.53119 * 15 14 12 18 18 N 1.30905 * 120.00273 * 15.23398 * 17 15 14 19 19 Si 1.86797 * 120.00013 * 195.23287 * 17 15 14 20 20 H 1.48496 * 109.47316 * 60.00011 * 19 17 15 21 21 H 1.48500 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47136 * 300.00207 * 19 17 15 23 23 C 1.38007 * 119.83873 * 179.97438 * 9 8 4 24 24 H 1.09006 * 109.46827 * 299.99975 * 1 2 3 25 25 H 1.09000 * 109.46804 * 59.99606 * 1 2 3 26 26 H 1.08991 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47492 * 239.99826 * 2 1 3 28 28 H 1.08997 * 109.47041 * 65.80138 * 3 2 1 29 29 H 1.09004 * 109.46818 * 185.80081 * 3 2 1 30 30 H 1.09000 * 109.46577 * 305.80222 * 3 2 1 31 31 H 1.08992 * 109.47170 * 185.19267 * 6 4 2 32 32 H 1.09003 * 109.46664 * 65.19089 * 6 4 2 33 33 H 0.96691 * 113.99603 * 179.97438 * 7 6 4 34 34 H 0.97002 * 120.00342 * 25.00761 * 8 4 2 35 35 H 1.08005 * 119.72631 * 0.02562 * 10 9 8 36 36 H 1.07998 * 119.89139 * 180.25914 * 11 10 9 37 37 H 0.97001 * 120.00397 * 180.02562 * 13 12 11 38 38 H 0.97007 * 120.00157 * 0.02562 * 13 12 11 39 39 H 0.97004 * 120.00095 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.11630 * 359.96045 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7195 -0.1784 2.1385 6 6 3.5684 -0.7845 1.2135 7 8 3.9916 -1.3888 -0.0104 8 7 1.4957 -2.0809 1.2845 9 6 1.3630 -2.7495 2.5057 10 6 1.7556 -2.1203 3.6883 11 6 1.6264 -2.7648 4.9024 12 6 1.1134 -4.0526 4.9582 13 7 0.9894 -4.7019 6.1794 14 6 0.7174 -4.7016 3.7641 15 6 0.1947 -6.0108 3.8063 16 1 -0.3006 -6.3660 4.6977 17 6 0.3181 -6.8493 2.6934 18 7 1.1598 -6.5482 1.7371 19 14 -0.7181 -8.3987 2.5718 20 1 -2.1575 -8.0341 2.5884 21 1 -0.4013 -9.1082 1.3064 22 1 -0.4190 -9.2860 3.7245 23 6 0.8494 -4.0301 2.5351 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.7640 1.9255 0.9373 29 1 3.1251 1.4442 -0.1039 30 1 1.5943 1.9854 -0.8335 31 1 3.9272 -1.3774 2.0546 32 1 3.9753 0.2245 1.2802 33 1 4.9514 -1.4614 -0.1018 34 1 1.2275 -2.5175 0.4609 35 1 2.1596 -1.1193 3.6538 36 1 1.9296 -2.2664 5.8113 37 1 0.6307 -5.6025 6.2157 38 1 1.2614 -4.2550 6.9962 39 1 1.2456 -7.1298 0.9655 40 1 0.5498 -4.5150 1.6178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127462801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:42 Heat of formation + Delta-G solvation = -59.145722 kcal Electronic energy + Delta-G solvation = -20369.291690 eV Core-core repulsion = 17375.053400 eV Total energy + Delta-G solvation = -2994.238290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11959 -38.85214 -36.56021 -35.49213 -35.24017 -32.72161 -31.29851 -29.73157 -28.27676 -27.04055 -26.53891 -23.79094 -23.09100 -21.42036 -20.71053 -18.94268 -18.15156 -17.79223 -17.21356 -16.65069 -16.56793 -16.24643 -15.78462 -15.29171 -14.68447 -14.37152 -14.10284 -13.96955 -13.71865 -13.61612 -13.33160 -13.06236 -13.01389 -12.91443 -12.73075 -12.65734 -12.11228 -11.98758 -11.85657 -11.64489 -11.48010 -11.18934 -11.10213 -10.92017 -10.74346 -9.34555 -9.10902 -8.47398 -7.24445 -5.99038 1.14975 1.40584 1.50192 1.54257 1.68468 2.27684 2.91560 2.98717 3.55156 3.79327 3.85290 3.98146 4.09842 4.23555 4.47865 4.55732 4.64447 4.66752 4.75152 4.85210 4.91697 4.96346 5.06462 5.09450 5.25138 5.28207 5.37986 5.43061 5.50155 5.53594 5.71037 5.92680 6.09098 6.19897 6.33394 6.59499 6.94932 6.99760 7.10401 7.19178 7.29578 7.50373 7.69197 8.52825 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.005668 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.563744 B = 4938.671510 C = 5566.760011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.137 4.137 4 C 0.165 3.835 5 H 0.081 0.919 6 C 0.063 3.937 7 O -0.580 6.580 8 N -0.744 5.744 9 C 0.180 3.820 10 C -0.259 4.259 11 C -0.157 4.157 12 C 0.067 3.933 13 N -0.880 5.880 14 C 0.061 3.939 15 C -0.494 4.494 16 H 0.073 0.927 17 C 0.032 3.968 18 N -0.835 5.835 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.226 4.226 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.387 0.613 34 H 0.384 0.616 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.389 0.611 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 11.137 -2.250 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.195 4.195 4 C 0.059 3.941 5 H 0.098 0.902 6 C -0.017 4.017 7 O -0.387 6.387 8 N -0.375 5.375 9 C 0.079 3.921 10 C -0.283 4.283 11 C -0.181 4.181 12 C -0.035 4.035 13 N -0.424 5.424 14 C 0.056 3.944 15 C -0.525 4.525 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.462 5.462 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.251 4.251 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.217 0.783 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.217 0.783 38 H 0.218 0.782 39 H 0.088 0.912 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.110 11.229 -2.574 11.712 hybrid contribution 0.207 -1.361 0.022 1.376 sum 2.317 9.868 -2.553 10.453 Atomic orbital electron populations 1.21771 0.95148 1.01115 1.01823 1.21185 0.95689 0.97110 0.97096 1.21779 1.01331 0.93822 1.02544 1.20990 0.90777 0.83589 0.98783 0.90166 1.22768 0.96365 0.96637 0.85881 1.86453 1.28540 1.84355 1.39340 1.44378 1.72881 1.15315 1.04930 1.17618 0.96838 0.91418 0.86191 1.19915 1.16666 1.00666 0.91022 1.20055 1.06867 0.94003 0.97189 1.18032 1.04527 0.93757 0.87208 1.41672 1.76949 1.19131 1.04601 1.17355 0.93457 0.93268 0.90353 1.19361 1.34999 0.97758 1.00379 0.90856 1.26567 0.94642 1.02277 0.94514 1.69976 1.29401 1.38146 1.08708 0.85381 0.79160 0.77483 0.78339 1.19033 1.20085 1.18437 1.20443 1.12885 0.93768 0.97994 0.92914 0.91454 0.94365 0.91430 0.92081 0.92018 0.91410 0.95558 0.90968 0.76447 0.78291 0.87356 0.87118 0.78299 0.78233 0.91216 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.00 71.98 0.65 -2.99 16 2 C -0.09 -2.34 2.39 -10.79 -0.03 -2.37 16 3 C -0.14 -2.62 8.75 71.98 0.63 -1.99 16 4 C 0.16 5.06 1.64 45.00 0.07 5.14 16 5 H 0.08 2.48 6.48 -2.39 -0.02 2.47 16 6 C 0.06 1.77 6.34 71.98 0.46 2.23 16 7 O -0.58 -16.56 12.67 -148.98 -1.89 -18.45 16 8 N -0.74 -29.45 4.47 -318.97 -1.43 -30.87 16 9 C 0.18 8.55 6.63 38.13 0.25 8.80 16 10 C -0.26 -11.49 8.83 22.55 0.20 -11.29 16 11 C -0.16 -7.05 9.86 22.35 0.22 -6.83 16 12 C 0.07 3.27 6.79 38.97 0.26 3.53 16 13 N -0.88 -35.96 8.98 -50.32 -0.45 -36.41 16 14 C 0.06 3.36 5.57 -21.18 -0.12 3.24 16 15 C -0.49 -26.99 8.48 23.35 0.20 -26.79 16 16 H 0.07 3.79 6.71 -2.91 -0.02 3.77 16 17 C 0.03 1.70 5.18 85.23 0.44 2.14 16 18 N -0.83 -46.13 10.94 21.82 0.24 -45.89 16 19 Si 0.97 40.20 29.59 68.60 2.03 42.23 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 C -0.23 -12.37 8.49 22.81 0.19 -12.17 16 24 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.15 7.26 -2.39 -0.02 1.13 16 27 H 0.07 1.91 7.46 -2.39 -0.02 1.89 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.10 6.93 -2.38 -0.02 1.09 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.03 0.87 7.78 -2.39 -0.02 0.85 16 32 H 0.07 1.56 6.91 -2.39 -0.02 1.54 16 33 H 0.39 7.62 9.12 -74.06 -0.68 6.94 16 34 H 0.38 15.78 8.21 -92.71 -0.76 15.02 16 35 H 0.11 4.19 6.16 -2.91 -0.02 4.17 16 36 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.39 15.81 7.06 -92.71 -0.65 15.16 16 38 H 0.39 13.11 8.83 -92.70 -0.82 12.29 16 39 H 0.28 14.21 8.30 -92.71 -0.77 13.44 16 40 H 0.09 5.42 6.21 -2.91 -0.02 5.40 16 Total: -1.00 -64.49 319.95 0.12 -64.37 By element: Atomic # 1 Polarization: 66.19 SS G_CDS: -1.82 Total: 64.38 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 3.43 Total: -39.35 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -1.64 Total: -113.18 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.89 Total: -18.45 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -64.49 0.12 -64.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127462801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.224 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds