Wall clock time and date at job start Mon Mar 30 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47177 * 2 1 4 4 C 1.53004 * 109.46558 * 119.99712 * 2 1 3 5 5 C 1.53004 * 109.46611 * 185.00207 * 4 2 1 6 6 C 1.53001 * 109.46648 * 180.02562 * 5 4 2 7 7 O 1.42903 * 109.46971 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47214 * 239.99843 * 2 1 3 9 9 C 1.39851 * 120.00111 * 85.00167 * 8 2 1 10 10 C 1.39599 * 119.83809 * 0.02562 * 9 8 2 11 11 C 1.38061 * 120.54951 * 179.97438 * 10 9 8 12 12 C 1.38739 * 120.21739 * 359.77852 * 11 10 9 13 13 N 1.38862 * 120.15948 * 180.26025 * 12 11 10 14 14 C 1.41559 * 119.67297 * 0.47047 * 12 11 10 15 15 C 1.41023 * 120.26663 * 179.78817 * 14 12 11 16 16 H 1.08007 * 119.99907 * 333.08319 * 15 14 12 17 17 C 1.39886 * 120.00403 * 153.36461 * 15 14 12 18 18 N 1.30904 * 119.99627 * 343.99101 * 17 15 14 19 19 Si 1.86795 * 120.00202 * 163.98855 * 17 15 14 20 20 H 1.48497 * 109.47382 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47164 * 120.00018 * 19 17 15 22 22 H 1.48507 * 109.47127 * 239.99954 * 19 17 15 23 23 C 1.38002 * 119.83901 * 179.97438 * 9 8 2 24 24 H 1.09007 * 109.46865 * 60.00395 * 1 2 3 25 25 H 1.09001 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47225 * 300.00484 * 1 2 3 27 27 H 1.08995 * 109.47441 * 305.00123 * 4 2 1 28 28 H 1.08998 * 109.47132 * 65.00258 * 4 2 1 29 29 H 1.09004 * 109.46978 * 299.99973 * 5 4 2 30 30 H 1.08998 * 109.47330 * 60.00173 * 5 4 2 31 31 H 1.09004 * 109.47099 * 299.99520 * 6 5 4 32 32 H 1.08998 * 109.47423 * 59.99851 * 6 5 4 33 33 H 0.96697 * 114.00284 * 179.97438 * 7 6 5 34 34 H 0.96999 * 119.99801 * 265.00349 * 8 2 1 35 35 H 1.08005 * 119.72805 * 359.97438 * 10 9 8 36 36 H 1.08006 * 119.88740 * 180.02562 * 11 10 9 37 37 H 0.97007 * 120.00001 * 180.21551 * 13 12 11 38 38 H 0.96995 * 120.00492 * 0.21776 * 13 12 11 39 39 H 0.96998 * 119.99976 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.11386 * 0.04911 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3350 2.5628 7 8 5.4990 -1.2347 2.6228 8 7 2.0184 -0.6906 -1.1961 9 6 2.1520 0.0070 -2.4008 10 6 1.8196 1.3615 -2.4596 11 6 1.9463 2.0646 -3.6411 12 6 2.4113 1.4308 -4.7843 13 7 2.5434 2.1404 -5.9706 14 6 2.7460 0.0562 -4.7366 15 6 3.2156 -0.6016 -5.8922 16 1 2.9312 -0.2433 -6.8707 17 6 4.0448 -1.7217 -5.7714 18 7 4.6383 -1.9768 -4.6329 19 14 4.3052 -2.8532 -7.2346 20 1 3.5281 -2.3487 -8.3951 21 1 5.7485 -2.8885 -7.5825 22 1 3.8457 -4.2226 -6.8894 23 6 2.6129 -0.6468 -3.5254 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2057 29 1 3.9994 -1.0728 0.4261 30 1 3.8532 0.4370 1.3575 31 1 3.6401 -0.8758 3.4507 32 1 3.7864 -2.3852 2.5188 33 1 5.8920 -1.6706 3.3913 34 1 2.2491 -1.6318 -1.1525 35 1 1.4602 1.8638 -1.5736 36 1 1.6865 3.1124 -3.6743 37 1 2.8658 1.6942 -6.7693 38 1 2.3134 3.0822 -6.0006 39 1 5.2130 -2.7536 -4.5489 40 1 2.8691 -1.6948 -3.4761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127476097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:56 Heat of formation + Delta-G solvation = -65.489203 kcal Electronic energy + Delta-G solvation = -19876.834575 eV Core-core repulsion = 16882.321211 eV Total energy + Delta-G solvation = -2994.513364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.91565 -38.49857 -37.49368 -35.34058 -34.94210 -32.74100 -31.35668 -30.93501 -27.74452 -26.94859 -26.30581 -23.29370 -22.58887 -21.84310 -21.08899 -18.92856 -18.33750 -17.72632 -17.27630 -16.96818 -16.39779 -16.36521 -15.93828 -15.07935 -14.90963 -14.35087 -14.18590 -13.98338 -13.90825 -13.67396 -13.51303 -13.11309 -12.90929 -12.86007 -12.67774 -12.24721 -12.18128 -12.08006 -11.90112 -11.72397 -11.46537 -11.33122 -11.07140 -10.92726 -10.86084 -9.35883 -9.11300 -8.48240 -7.25142 -5.98830 1.13260 1.40763 1.51697 1.54644 1.67973 2.27789 2.92563 3.02835 3.31674 3.79035 3.98029 3.99720 4.06363 4.27625 4.37782 4.49869 4.59057 4.65567 4.71811 4.85403 4.87597 4.89112 5.00557 5.11075 5.25606 5.28149 5.37267 5.39551 5.46920 5.51225 5.70725 5.93401 6.09312 6.20272 6.32767 6.59592 6.93705 6.99953 7.09704 7.17535 7.32293 7.50375 7.68598 8.52826 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.005526 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.198385 B = 5065.565209 C = 6150.626674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.060 0.940 4 C -0.107 4.107 5 C -0.120 4.120 6 C 0.078 3.922 7 O -0.603 6.603 8 N -0.751 5.751 9 C 0.179 3.821 10 C -0.257 4.257 11 C -0.159 4.159 12 C 0.067 3.933 13 N -0.880 5.880 14 C 0.060 3.940 15 C -0.493 4.493 16 H 0.073 0.927 17 C 0.033 3.967 18 N -0.834 5.834 19 Si 0.974 3.026 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.227 4.227 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.386 0.614 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.389 0.611 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 0.119 11.965 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.078 0.922 4 C -0.145 4.145 5 C -0.158 4.158 6 C 0.001 3.999 7 O -0.411 6.411 8 N -0.385 5.385 9 C 0.079 3.921 10 C -0.281 4.281 11 C -0.183 4.183 12 C -0.035 4.035 13 N -0.424 5.424 14 C 0.055 3.945 15 C -0.525 4.525 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.462 5.462 19 Si 0.797 3.203 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.197 1.197 23 C -0.251 4.251 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.246 0.754 34 H 0.219 0.781 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.217 0.783 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.092 0.396 11.719 12.420 hybrid contribution 0.639 -0.999 -0.618 1.337 sum -3.453 -0.602 11.102 11.642 Atomic orbital electron populations 1.22212 0.95675 1.01987 1.01844 1.20829 0.93644 0.96257 0.84517 0.92232 1.21687 0.93516 1.01725 0.97602 1.21474 0.96326 1.00484 0.97493 1.22258 0.80326 0.99587 0.97757 1.86491 1.21609 1.80896 1.52126 1.44523 1.75778 1.11299 1.06859 1.17585 0.96744 0.91605 0.86199 1.19946 1.17202 0.93189 0.97756 1.20068 1.07312 0.98469 0.92466 1.18041 1.05940 0.91459 0.88074 1.41674 1.79315 1.11683 1.09697 1.17363 0.93297 0.89834 0.94014 1.19400 1.27628 1.11777 0.93654 0.90925 1.26563 0.93452 0.98550 0.99410 1.69984 1.23066 1.25534 1.27633 0.85282 0.78364 0.77995 0.78699 1.18185 1.19763 1.19683 1.20457 1.12483 0.99106 0.93097 0.94260 0.92608 0.90018 0.88052 0.90685 0.94038 0.92897 0.91401 0.92667 0.75425 0.78123 0.87399 0.87295 0.78279 0.78264 0.91211 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.42 71.98 0.68 -3.40 16 2 C 0.15 4.47 2.27 44.99 0.10 4.57 16 3 H 0.06 1.90 6.47 -2.39 -0.02 1.89 16 4 C -0.11 -2.38 4.75 30.60 0.15 -2.24 16 5 C -0.12 -3.22 5.47 30.60 0.17 -3.05 16 6 C 0.08 1.62 7.05 71.98 0.51 2.13 16 7 O -0.60 -14.59 13.66 -148.98 -2.04 -16.62 16 8 N -0.75 -28.70 4.70 -318.96 -1.50 -30.20 16 9 C 0.18 8.52 6.63 38.13 0.25 8.77 16 10 C -0.26 -11.65 8.84 22.56 0.20 -11.45 16 11 C -0.16 -7.30 9.86 22.35 0.22 -7.08 16 12 C 0.07 3.32 6.79 38.97 0.26 3.59 16 13 N -0.88 -36.61 8.98 -50.31 -0.45 -37.07 16 14 C 0.06 3.34 5.57 -21.18 -0.12 3.22 16 15 C -0.49 -27.09 8.47 23.35 0.20 -26.89 16 16 H 0.07 3.79 6.73 -2.91 -0.02 3.77 16 17 C 0.03 1.71 5.16 85.23 0.44 2.15 16 18 N -0.83 -46.01 10.97 21.82 0.24 -45.77 16 19 Si 0.97 40.24 29.59 68.60 2.03 42.27 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 C -0.23 -12.38 8.49 22.81 0.19 -12.18 16 24 H 0.04 1.19 7.69 -2.38 -0.02 1.18 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.41 7.75 -2.38 -0.02 1.40 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.40 5.20 9.12 -74.06 -0.68 4.53 16 34 H 0.39 14.58 8.61 -92.71 -0.80 13.78 16 35 H 0.11 4.33 6.06 -2.91 -0.02 4.31 16 36 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.39 16.07 7.07 -92.70 -0.65 15.41 16 38 H 0.39 13.41 8.83 -92.71 -0.82 12.60 16 39 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 40 H 0.09 5.46 6.23 -2.91 -0.02 5.45 16 Total: -1.00 -67.40 325.89 -0.33 -67.73 By element: Atomic # 1 Polarization: 63.39 SS G_CDS: -1.86 Total: 61.53 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 3.25 Total: -41.87 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -1.71 Total: -113.04 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -2.04 Total: -16.62 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -67.40 -0.33 -67.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127476097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.245 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds