Wall clock time and date at job start Mon Mar 30 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47681 * 2 1 4 4 O 1.42909 * 109.46977 * 240.00115 * 2 1 3 5 5 C 1.53001 * 109.47335 * 120.00707 * 2 1 3 6 6 C 1.52995 * 109.47063 * 184.99730 * 5 2 1 7 7 H 1.08994 * 109.47042 * 304.99452 * 6 5 2 8 8 C 1.53007 * 109.46867 * 184.99582 * 6 5 2 9 9 N 1.46500 * 109.47481 * 64.99906 * 6 5 2 10 10 C 1.39851 * 120.00215 * 205.00059 * 9 6 5 11 11 C 1.39601 * 119.83893 * 359.97438 * 10 9 6 12 12 C 1.38056 * 120.55193 * 179.97438 * 11 10 9 13 13 C 1.38738 * 120.21772 * 0.03243 * 12 11 10 14 14 N 1.38868 * 120.16025 * 179.97438 * 13 12 11 15 15 C 1.41562 * 119.67609 * 359.97438 * 13 12 11 16 16 C 1.41028 * 120.27078 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99791 * 25.84547 * 16 15 13 18 18 C 1.39881 * 120.00096 * 205.84277 * 16 15 13 19 19 N 1.30904 * 120.00093 * 17.10413 * 18 16 15 20 20 Si 1.86806 * 119.99861 * 197.10346 * 18 16 15 21 21 H 1.48497 * 109.46978 * 94.50684 * 20 18 16 22 22 H 1.48500 * 109.47017 * 214.50412 * 20 18 16 23 23 H 1.48496 * 109.47057 * 334.50315 * 20 18 16 24 24 C 1.38008 * 119.84030 * 179.71908 * 10 9 6 25 25 H 1.09005 * 109.46765 * 299.99963 * 1 2 3 26 26 H 1.09000 * 109.47089 * 59.99478 * 1 2 3 27 27 H 1.08992 * 109.47609 * 180.02562 * 1 2 3 28 28 H 0.96699 * 113.99941 * 300.00709 * 4 2 1 29 29 H 1.09007 * 109.46714 * 304.99216 * 5 2 1 30 30 H 1.08993 * 109.47208 * 64.99093 * 5 2 1 31 31 H 1.09004 * 109.47192 * 299.99931 * 8 6 5 32 32 H 1.08990 * 109.47076 * 59.99789 * 8 6 5 33 33 H 1.08999 * 109.46826 * 180.02562 * 8 6 5 34 34 H 0.97010 * 119.99947 * 24.99492 * 9 6 5 35 35 H 1.08004 * 119.72459 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.88999 * 180.02562 * 12 11 10 37 37 H 0.96993 * 120.00367 * 359.97438 * 14 13 12 38 38 H 0.97008 * 119.99224 * 179.97438 * 14 13 12 39 39 H 0.96998 * 119.99992 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.11234 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7214 1.2491 6 6 3.5648 -0.6135 1.3135 7 1 3.9953 -0.9924 0.3866 8 6 4.0851 -1.4386 2.4923 9 7 3.9480 0.7892 1.4924 10 6 5.2069 1.2293 1.0713 11 6 6.0960 0.3290 0.4814 12 6 7.3422 0.7477 0.0599 13 6 7.7249 2.0717 0.2195 14 7 8.9789 2.4914 -0.2044 15 6 6.8308 2.9926 0.8166 16 6 7.2067 4.3414 0.9845 17 1 7.9432 4.7823 0.3291 18 6 6.6255 5.1083 1.9998 19 7 6.0024 4.5199 2.9893 20 14 6.7387 6.9721 1.9437 21 1 5.5184 7.5229 1.3014 22 1 6.8531 7.5028 3.3259 23 1 7.9345 7.3719 1.1594 24 6 5.5623 2.5526 1.2361 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.7208 -1.5952 -1.2330 29 1 1.6054 -0.2618 2.1370 30 1 1.7515 -1.7716 1.2055 31 1 3.6546 -1.0596 3.4192 32 1 3.8000 -2.4821 2.3593 33 1 5.1714 -1.3613 2.5384 34 1 3.3285 1.4127 1.9028 35 1 5.8065 -0.7036 0.3537 36 1 8.0214 0.0422 -0.3955 37 1 9.5898 1.8584 -0.6129 38 1 9.2439 3.4178 -0.0920 39 1 5.5997 5.0516 3.6936 40 1 4.8704 3.2470 1.6895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127514405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:26 Heat of formation + Delta-G solvation = -42.098393 kcal Electronic energy + Delta-G solvation = -20181.075744 eV Core-core repulsion = 17187.576682 eV Total energy + Delta-G solvation = -2993.499062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.55274 -37.52780 -35.64588 -33.40366 -32.88930 -31.07887 -29.77737 -29.28093 -26.69755 -25.85855 -24.65394 -21.82299 -21.44596 -20.38753 -19.43402 -17.10856 -16.52590 -15.91366 -15.64540 -15.41379 -14.81284 -14.60317 -14.55278 -14.21120 -13.25329 -12.90625 -12.48511 -12.44603 -12.30475 -12.08650 -11.91830 -11.66121 -11.61501 -11.46384 -11.20291 -11.00858 -10.94669 -10.77977 -10.54035 -10.26492 -9.90673 -9.73817 -9.61149 -9.22809 -9.00017 -7.68464 -7.16151 -6.57373 -5.45835 -4.00419 2.95103 3.16341 3.19273 3.36784 3.55715 4.07189 4.40498 4.50115 4.81140 4.87345 5.03500 5.23460 5.42357 5.48266 5.48840 5.60409 5.76078 5.88705 5.94275 5.98543 6.02245 6.13984 6.27141 6.44271 6.47521 6.63470 6.77445 7.18809 7.23515 7.37712 7.55480 7.75831 7.78625 7.95562 8.06883 8.18834 8.52509 8.82697 8.97007 9.00793 9.06516 9.32248 9.41089 10.42221 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018639 B = 0.005594 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.870094 B = 5004.579747 C = 5734.592973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.102 3.898 3 H 0.105 0.895 4 O -0.556 6.556 5 C -0.157 4.157 6 C 0.161 3.839 7 H 0.079 0.921 8 C -0.167 4.167 9 N -0.755 5.755 10 C 0.182 3.818 11 C -0.251 4.251 12 C -0.153 4.153 13 C 0.083 3.917 14 N -0.889 5.889 15 C 0.095 3.905 16 C -0.465 4.465 17 H 0.070 0.930 18 C 0.077 3.923 19 N -0.801 5.801 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 C -0.201 4.201 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.366 0.634 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.384 0.616 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.373 0.627 38 H 0.388 0.612 39 H 0.273 0.727 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -7.899 -1.880 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.043 3.957 3 H 0.123 0.877 4 O -0.360 6.360 5 C -0.195 4.195 6 C 0.054 3.946 7 H 0.097 0.903 8 C -0.226 4.226 9 N -0.389 5.389 10 C 0.083 3.917 11 C -0.275 4.275 12 C -0.177 4.177 13 C -0.018 4.018 14 N -0.432 5.432 15 C 0.090 3.910 16 C -0.497 4.497 17 H 0.088 0.912 18 C -0.138 4.138 19 N -0.428 5.428 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.189 1.189 24 C -0.226 4.226 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.212 0.788 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.217 0.783 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.084 0.916 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.797 -7.448 -1.785 10.929 hybrid contribution -0.184 0.615 0.450 0.784 sum -7.981 -6.833 -1.336 10.591 Atomic orbital electron populations 1.22528 0.97135 1.01986 1.02583 1.21947 0.91796 0.97660 0.84330 0.87749 1.86702 1.77094 1.28264 1.43949 1.22587 0.97120 1.00910 0.98896 1.20527 0.92088 0.84030 0.97934 0.90302 1.22318 1.02559 0.98558 0.99168 1.44378 1.16089 1.07564 1.70895 1.17469 0.84652 0.93164 0.96395 1.19635 0.96030 0.97205 1.14637 1.19713 0.96889 0.93569 1.07520 1.17858 0.86809 0.92540 1.04581 1.41803 1.15869 1.12283 1.73255 1.16957 0.89962 0.92051 0.92014 1.19130 1.21794 0.95349 1.13386 0.91156 1.25728 0.93770 1.00155 0.94167 1.69896 1.28371 1.37053 1.07447 0.86444 0.79467 0.83545 0.77965 1.19732 1.20679 1.18937 1.20453 0.97568 0.92757 1.11799 0.91749 0.92020 0.92717 0.78832 0.91053 0.91221 0.93172 0.93385 0.91872 0.78328 0.89599 0.89909 0.80173 0.78395 0.91581 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.53 37.15 0.35 -1.47 16 2 C 0.10 1.28 3.53 -26.73 -0.09 1.18 16 3 H 0.10 1.59 7.62 -51.93 -0.40 1.19 16 4 O -0.56 -7.56 12.79 -35.23 -0.45 -8.01 16 5 C -0.16 -1.87 4.43 -26.73 -0.12 -1.98 16 6 C 0.16 2.50 2.22 -67.93 -0.15 2.35 16 7 H 0.08 1.36 6.02 -51.93 -0.31 1.05 16 8 C -0.17 -2.47 9.42 37.16 0.35 -2.12 16 9 N -0.76 -14.39 4.62 -52.17 -0.24 -14.63 16 10 C 0.18 4.27 6.63 -83.78 -0.56 3.72 16 11 C -0.25 -5.84 8.84 -39.14 -0.35 -6.18 16 12 C -0.15 -3.60 9.86 -39.46 -0.39 -3.99 16 13 C 0.08 2.06 6.79 -83.22 -0.56 1.50 16 14 N -0.89 -18.76 8.98 32.75 0.29 -18.47 16 15 C 0.10 2.58 5.57 -106.66 -0.59 1.99 16 16 C -0.47 -12.45 8.48 -37.91 -0.32 -12.77 16 17 H 0.07 1.80 6.70 -52.49 -0.35 1.45 16 18 C 0.08 1.99 5.14 -17.33 -0.09 1.90 16 19 N -0.80 -21.21 11.02 55.54 0.61 -20.60 16 20 Si 0.90 19.26 29.59 -169.99 -5.03 14.23 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.37 3.34 9.05 45.56 0.41 3.75 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 34 H 0.38 7.02 8.61 -40.82 -0.35 6.67 16 35 H 0.09 1.83 6.06 -52.48 -0.32 1.52 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.37 6.69 8.83 -40.82 -0.36 6.33 16 38 H 0.39 8.04 7.05 -40.82 -0.29 7.75 16 39 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.11 3.12 6.25 -52.49 -0.33 2.79 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -29.84 324.48 -7.98 -37.83 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -5.21 Total: 26.26 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.85 Total: -21.51 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.67 Total: -53.69 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.45 Total: -8.01 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.84 -7.98 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127514405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.271 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds