Wall clock time and date at job start Mon Mar 30 2020 05:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47350 * 2 1 4 4 N 1.31752 * 119.04151 * 90.00043 * 3 2 1 5 5 C 1.33168 * 120.87633 * 179.97438 * 4 3 2 6 6 N 1.38627 * 120.48364 * 179.97438 * 5 4 3 7 7 C 1.39169 * 119.02988 * 359.97438 * 5 4 3 8 8 C 1.50704 * 120.86470 * 179.97438 * 7 5 4 9 9 C 1.39130 * 118.26760 * 0.02562 * 7 5 4 10 10 N 1.38634 * 120.48254 * 179.97438 * 9 7 5 11 11 C 1.46905 * 110.99844 * 76.99769 * 10 9 7 12 12 C 1.53006 * 109.47067 * 58.99018 * 11 10 9 13 13 C 1.46899 * 110.99847 * 200.94946 * 10 9 7 14 14 C 1.50696 * 109.47020 * 164.21611 * 13 10 9 15 15 H 1.08000 * 120.00110 * 4.16553 * 14 13 10 16 16 C 1.37880 * 120.00099 * 184.16180 * 14 13 10 17 17 N 1.31505 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00020 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47438 * 59.99977 * 18 16 14 20 20 H 1.48501 * 109.47096 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47371 * 299.99836 * 18 16 14 22 22 N 1.31729 * 119.04112 * 269.73208 * 3 2 1 23 23 H 1.09005 * 109.46995 * 299.99636 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99793 * 1 2 3 25 25 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 120.00207 * 2 1 3 27 27 H 1.09004 * 109.46919 * 239.99815 * 2 1 3 28 28 H 0.96997 * 120.00195 * 359.97438 * 6 5 4 29 29 H 0.97003 * 119.99879 * 179.97438 * 6 5 4 30 30 H 1.08991 * 109.46885 * 84.74012 * 8 7 5 31 31 H 1.08999 * 109.46578 * 204.73950 * 8 7 5 32 32 H 1.09001 * 109.47106 * 324.73472 * 8 7 5 33 33 H 1.08997 * 109.47222 * 178.99211 * 11 10 9 34 34 H 1.08998 * 109.47230 * 298.99342 * 11 10 9 35 35 H 1.09000 * 109.46894 * 185.70644 * 12 11 10 36 36 H 1.08997 * 109.47316 * 305.71235 * 12 11 10 37 37 H 1.09000 * 109.46861 * 65.71030 * 12 11 10 38 38 H 1.08998 * 109.47197 * 284.21567 * 13 10 9 39 39 H 1.09002 * 109.47028 * 44.21483 * 13 10 9 40 40 H 0.97009 * 120.00501 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2456 2.0238 1.1519 5 6 2.6898 3.2785 1.1945 6 7 2.9108 3.9053 2.4111 7 6 2.9288 3.9513 -0.0001 8 6 3.4312 5.3721 -0.0001 9 6 2.6908 3.2783 -1.1943 10 7 2.9128 3.9048 -2.4109 11 6 4.3472 3.9520 -2.7247 12 6 4.9057 2.5283 -2.7735 13 6 2.1599 3.2468 -3.4871 14 6 2.1063 4.1534 -4.6896 15 1 2.6399 5.0923 -4.6822 16 6 1.3759 3.7843 -5.7993 17 7 0.7266 2.6408 -5.8084 18 14 1.3100 4.9078 -7.2901 19 1 2.6833 5.1130 -7.8165 20 1 0.4652 4.2862 -8.3414 21 1 0.7295 6.2171 -6.8980 22 7 2.2506 2.0219 -1.1517 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 2.7415 3.4299 3.2394 29 1 3.2348 4.8193 2.4339 30 1 4.5170 5.3735 0.0950 31 1 3.1476 5.8577 -0.9338 32 1 2.9923 5.9127 0.8385 33 1 4.4919 4.4324 -3.6923 34 1 4.8690 4.5207 -1.9551 35 1 5.9870 2.5666 -2.9055 36 1 4.6713 2.0139 -1.8416 37 1 4.4566 1.9903 -3.6084 38 1 2.6534 2.3133 -3.7576 39 1 1.1465 3.0362 -3.1452 40 1 0.2124 2.3811 -6.5890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128741147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:12 Heat of formation + Delta-G solvation = 47.880493 kcal Electronic energy + Delta-G solvation = -20768.255830 eV Core-core repulsion = 17810.951296 eV Total energy + Delta-G solvation = -2957.304534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76414 -37.48323 -35.76519 -33.19445 -32.45178 -31.69967 -30.87839 -29.44845 -27.10604 -26.24286 -23.54109 -23.08358 -22.90708 -20.96429 -19.80820 -18.08678 -16.79892 -16.13223 -15.68066 -15.39270 -14.44757 -14.38324 -14.26432 -13.91564 -13.70363 -13.61785 -13.23182 -12.81800 -12.41595 -12.12446 -12.03868 -11.74680 -11.46900 -11.38539 -11.13346 -11.02349 -10.79276 -10.76115 -10.56887 -10.26259 -10.15979 -9.96316 -9.37761 -9.14609 -8.58233 -8.39942 -7.96088 -7.44640 -5.98922 -4.01580 1.55280 1.92365 3.34359 3.38820 3.40915 3.54800 4.24644 4.37517 4.50633 4.61316 5.18791 5.30674 5.36410 5.44313 5.55780 5.55934 5.61831 5.70853 5.77318 5.83850 5.89752 6.02517 6.08845 6.19839 6.29009 6.31552 6.45487 6.52847 6.55978 6.70515 6.79381 7.13879 7.22740 7.48749 7.54673 7.76633 7.92095 8.09461 8.16162 8.52761 8.87474 9.05757 9.61145 11.11186 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.006378 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.600675 B = 4389.195011 C = 5157.223831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C 0.365 3.635 4 N -0.598 5.598 5 C 0.439 3.561 6 N -0.845 5.845 7 C -0.274 4.274 8 C -0.085 4.085 9 C 0.396 3.604 10 N -0.477 5.477 11 C 0.069 3.931 12 C -0.181 4.181 13 C 0.202 3.798 14 C -0.516 4.516 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.567 5.567 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.401 0.599 29 H 0.407 0.593 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.016 0.984 39 H 0.037 0.963 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 0.175 13.857 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C 0.094 3.906 4 N -0.325 5.325 5 C 0.196 3.804 6 N -0.390 5.390 7 C -0.286 4.286 8 C -0.143 4.143 9 C 0.160 3.840 10 N -0.195 5.195 11 C -0.057 4.057 12 C -0.240 4.240 13 C 0.078 3.922 14 C -0.555 4.555 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 N -0.289 5.289 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.230 0.770 29 H 0.238 0.762 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.055 0.945 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.858 -0.321 13.631 14.475 hybrid contribution 0.351 0.901 -0.538 1.107 sum 5.210 0.580 13.093 14.104 Atomic orbital electron populations 1.21650 0.93893 1.01884 1.02511 1.20255 0.96587 0.88760 1.03360 1.22588 0.89282 0.96220 0.82537 1.67666 1.23946 1.09465 1.31395 1.18110 0.87996 0.88243 0.86099 1.42062 1.75041 1.17281 1.04641 1.20350 1.16476 0.99929 0.91835 1.20343 0.99359 0.91443 1.03167 1.20017 0.86632 0.85798 0.91519 1.59678 1.09110 1.49007 1.01697 1.22039 0.85147 0.96207 1.02310 1.22382 1.00219 0.98811 1.02566 1.19749 0.93137 0.93240 0.86084 1.21123 1.30747 1.05133 0.98466 0.92062 1.24942 0.95442 0.95285 0.98632 1.69969 1.31807 1.21313 1.29973 0.86585 0.77961 0.80782 0.82190 1.20277 1.21356 1.20258 1.68573 1.20782 1.09978 1.29601 0.92800 0.91835 0.91985 0.90086 0.89369 0.76982 0.76212 0.92563 0.89733 0.93095 0.88787 0.92031 0.93008 0.93602 0.91005 0.96613 0.94473 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 37.15 0.37 -1.62 16 2 C -0.05 -0.76 6.37 -27.88 -0.18 -0.94 16 3 C 0.36 6.78 6.90 -157.28 -1.08 5.70 16 4 N -0.60 -10.46 10.36 -10.03 -0.10 -10.56 16 5 C 0.44 7.09 7.80 -154.71 -1.21 5.88 16 6 N -0.84 -9.46 8.99 31.19 0.28 -9.18 16 7 C -0.27 -4.78 5.86 -103.94 -0.61 -5.39 16 8 C -0.09 -1.19 8.12 36.01 0.29 -0.90 16 9 C 0.40 8.23 4.51 -154.70 -0.70 7.54 16 10 N -0.48 -10.50 3.75 -174.45 -0.65 -11.15 16 11 C 0.07 1.31 5.70 -3.82 -0.02 1.28 16 12 C -0.18 -3.33 9.31 37.16 0.35 -2.98 16 13 C 0.20 5.34 3.84 -4.98 -0.02 5.32 16 14 C -0.52 -14.39 8.59 -34.44 -0.30 -14.69 16 15 H 0.06 1.66 7.38 -52.49 -0.39 1.27 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.64 13.28 55.43 0.74 -25.91 16 18 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 N -0.57 -12.07 8.50 -10.03 -0.09 -12.15 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.40 3.81 8.95 -40.82 -0.37 3.45 16 29 H 0.41 3.58 7.07 -40.82 -0.29 3.29 16 30 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 31 H 0.08 1.34 7.37 -51.93 -0.38 0.96 16 32 H 0.05 0.58 6.94 -51.93 -0.36 0.22 16 33 H 0.09 1.84 7.09 -51.93 -0.37 1.48 16 34 H 0.06 1.00 6.67 -51.93 -0.35 0.66 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.87 6.64 -51.93 -0.34 0.53 16 37 H 0.07 1.49 6.57 -51.93 -0.34 1.15 16 38 H 0.02 0.45 6.09 -51.93 -0.32 0.13 16 39 H 0.04 1.11 7.74 -51.93 -0.40 0.71 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -32.01 321.63 -9.19 -41.20 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.98 Total: 5.60 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -3.20 Total: 0.77 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: 0.17 Total: -68.95 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.01 -9.19 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128741147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.082 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds