Wall clock time and date at job start Mon Mar 30 2020 05:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47350 * 2 1 4 4 N 1.31752 * 119.04151 * 90.00043 * 3 2 1 5 5 C 1.33168 * 120.87633 * 179.97438 * 4 3 2 6 6 N 1.38627 * 120.48364 * 179.97438 * 5 4 3 7 7 C 1.39169 * 119.02988 * 359.97438 * 5 4 3 8 8 C 1.50704 * 120.86470 * 179.97438 * 7 5 4 9 9 C 1.39130 * 118.26760 * 0.02562 * 7 5 4 10 10 N 1.38634 * 120.48254 * 179.97438 * 9 7 5 11 11 C 1.46905 * 110.99844 * 76.99769 * 10 9 7 12 12 C 1.53006 * 109.47067 * 58.99018 * 11 10 9 13 13 C 1.46899 * 110.99847 * 200.94946 * 10 9 7 14 14 C 1.50696 * 109.47020 * 164.21611 * 13 10 9 15 15 H 1.08000 * 120.00110 * 4.16553 * 14 13 10 16 16 C 1.37880 * 120.00099 * 184.16180 * 14 13 10 17 17 N 1.31505 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00020 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47438 * 59.99977 * 18 16 14 20 20 H 1.48501 * 109.47096 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47371 * 299.99836 * 18 16 14 22 22 N 1.31729 * 119.04112 * 269.73208 * 3 2 1 23 23 H 1.09005 * 109.46995 * 299.99636 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99793 * 1 2 3 25 25 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 120.00207 * 2 1 3 27 27 H 1.09004 * 109.46919 * 239.99815 * 2 1 3 28 28 H 0.96997 * 120.00195 * 359.97438 * 6 5 4 29 29 H 0.97003 * 119.99879 * 179.97438 * 6 5 4 30 30 H 1.08991 * 109.46885 * 84.74012 * 8 7 5 31 31 H 1.08999 * 109.46578 * 204.73950 * 8 7 5 32 32 H 1.09001 * 109.47106 * 324.73472 * 8 7 5 33 33 H 1.08997 * 109.47222 * 178.99211 * 11 10 9 34 34 H 1.08998 * 109.47230 * 298.99342 * 11 10 9 35 35 H 1.09000 * 109.46894 * 185.70644 * 12 11 10 36 36 H 1.08997 * 109.47316 * 305.71235 * 12 11 10 37 37 H 1.09000 * 109.46861 * 65.71030 * 12 11 10 38 38 H 1.08998 * 109.47197 * 284.21567 * 13 10 9 39 39 H 1.09002 * 109.47028 * 44.21483 * 13 10 9 40 40 H 0.97009 * 120.00501 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2456 2.0238 1.1519 5 6 2.6898 3.2785 1.1945 6 7 2.9108 3.9053 2.4111 7 6 2.9288 3.9513 -0.0001 8 6 3.4312 5.3721 -0.0001 9 6 2.6908 3.2783 -1.1943 10 7 2.9128 3.9048 -2.4109 11 6 4.3472 3.9520 -2.7247 12 6 4.9057 2.5283 -2.7735 13 6 2.1599 3.2468 -3.4871 14 6 2.1063 4.1534 -4.6896 15 1 2.6399 5.0923 -4.6822 16 6 1.3759 3.7843 -5.7993 17 7 0.7266 2.6408 -5.8084 18 14 1.3100 4.9078 -7.2901 19 1 2.6833 5.1130 -7.8165 20 1 0.4652 4.2862 -8.3414 21 1 0.7295 6.2171 -6.8980 22 7 2.2506 2.0219 -1.1517 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 2.7415 3.4299 3.2394 29 1 3.2348 4.8193 2.4339 30 1 4.5170 5.3735 0.0950 31 1 3.1476 5.8577 -0.9338 32 1 2.9923 5.9127 0.8385 33 1 4.4919 4.4324 -3.6923 34 1 4.8690 4.5207 -1.9551 35 1 5.9870 2.5666 -2.9055 36 1 4.6713 2.0139 -1.8416 37 1 4.4566 1.9903 -3.6084 38 1 2.6534 2.3133 -3.7576 39 1 1.1465 3.0362 -3.1452 40 1 0.2124 2.3811 -6.5890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128741147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:12 Heat of formation + Delta-G solvation = 26.541124 kcal Electronic energy + Delta-G solvation = -20769.181175 eV Core-core repulsion = 17810.951296 eV Total energy + Delta-G solvation = -2958.229878 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.17002 -39.06767 -36.99012 -35.00261 -34.09776 -33.00975 -32.14175 -31.12098 -28.92360 -27.65780 -25.10895 -24.62252 -24.43337 -22.36245 -21.35487 -19.42424 -18.36332 -18.04433 -17.02272 -16.97127 -16.28138 -15.79505 -15.67856 -15.26964 -15.11078 -14.88802 -14.73392 -14.21871 -14.01123 -13.81436 -13.23847 -13.15318 -13.04901 -12.86687 -12.70369 -12.61726 -12.53456 -12.32009 -12.03049 -11.97225 -11.76812 -11.51198 -11.37308 -10.69347 -10.51710 -10.02139 -9.39204 -8.94703 -8.16770 -6.28583 0.15026 0.54211 1.42056 1.45942 1.53547 2.37493 2.45132 2.84701 3.00723 3.16203 3.26721 3.82382 4.03191 4.12426 4.19200 4.28416 4.35052 4.38927 4.41491 4.51681 4.66360 4.80620 4.84367 4.90483 4.97039 5.03830 5.10520 5.14571 5.20590 5.29678 5.34560 5.43808 5.54249 5.67215 5.92509 6.06860 6.16804 6.33899 6.62525 6.82931 6.96799 7.39436 7.52315 8.94030 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.006378 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.600675 B = 4389.195011 C = 5157.223831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C 0.351 3.649 4 N -0.599 5.599 5 C 0.438 3.562 6 N -0.816 5.816 7 C -0.274 4.274 8 C -0.082 4.082 9 C 0.362 3.638 10 N -0.480 5.480 11 C 0.067 3.933 12 C -0.168 4.168 13 C 0.230 3.770 14 C -0.530 4.530 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.972 3.028 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.269 1.269 22 N -0.608 5.608 23 H 0.056 0.944 24 H 0.029 0.971 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.414 0.586 29 H 0.422 0.578 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.036 0.964 38 H -0.014 1.014 39 H -0.010 1.010 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 1.734 15.540 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.088 4.088 3 C 0.080 3.920 4 N -0.326 5.326 5 C 0.192 3.808 6 N -0.363 5.363 7 C -0.286 4.286 8 C -0.140 4.140 9 C 0.128 3.872 10 N -0.198 5.198 11 C -0.058 4.058 12 C -0.227 4.227 13 C 0.105 3.895 14 C -0.568 4.568 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.796 3.204 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.194 1.194 22 N -0.332 5.332 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.098 0.902 28 H 0.245 0.755 29 H 0.256 0.744 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.004 0.996 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.111 1.275 15.374 16.593 hybrid contribution -0.006 0.393 -0.886 0.969 sum 6.105 1.668 14.488 15.810 Atomic orbital electron populations 1.21587 0.93231 1.03331 1.00908 1.20367 0.97042 0.87279 1.04157 1.23126 0.89203 0.97374 0.82265 1.67763 1.24166 1.10138 1.30530 1.18339 0.87193 0.87945 0.87363 1.41984 1.73194 1.17776 1.03372 1.20622 1.15712 1.01338 0.90958 1.20404 1.00939 0.89166 1.03456 1.20197 0.88646 0.86453 0.91905 1.59648 1.10322 1.48784 1.01047 1.22155 0.84003 0.96705 1.02940 1.22232 1.01980 0.97992 1.00454 1.19127 0.90948 0.92244 0.87192 1.21473 1.30744 1.05422 0.99150 0.91369 1.25930 0.94828 0.96791 1.02022 1.70133 1.32686 1.23393 1.30993 0.85409 0.78567 0.78559 0.77888 1.18782 1.21098 1.19379 1.68498 1.22203 1.11064 1.31392 0.92447 0.95207 0.89012 0.87473 0.90217 0.75505 0.74409 0.90173 0.91714 0.90055 0.89767 0.88628 0.89644 0.94610 0.94525 0.99624 0.99218 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.89 71.98 0.71 -3.06 16 2 C -0.05 -1.50 6.37 29.85 0.19 -1.31 16 3 C 0.35 13.27 6.90 138.78 0.96 14.23 16 4 N -0.60 -20.28 10.36 -185.65 -1.92 -22.20 16 5 C 0.44 13.23 7.80 132.97 1.04 14.26 16 6 N -0.82 -15.30 8.99 -55.22 -0.50 -15.79 16 7 C -0.27 -9.22 5.86 -19.42 -0.11 -9.34 16 8 C -0.08 -2.06 8.12 71.24 0.58 -1.49 16 9 C 0.36 15.39 4.51 132.95 0.60 15.99 16 10 N -0.48 -21.79 3.75 -705.85 -2.65 -24.44 16 11 C 0.07 2.55 5.70 86.30 0.49 3.04 16 12 C -0.17 -6.27 9.31 71.98 0.67 -5.60 16 13 C 0.23 12.95 3.84 85.56 0.33 13.27 16 14 C -0.53 -30.49 8.59 25.60 0.22 -30.27 16 15 H 0.07 3.74 7.38 -2.91 -0.02 3.72 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -57.95 13.28 21.45 0.28 -57.67 16 18 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 N -0.61 -27.12 8.50 -185.66 -1.58 -28.70 16 23 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 28 H 0.41 6.28 8.95 -92.71 -0.83 5.45 16 29 H 0.42 5.54 7.07 -92.71 -0.66 4.89 16 30 H 0.08 1.65 7.88 -2.39 -0.02 1.63 16 31 H 0.06 1.94 7.37 -2.39 -0.02 1.92 16 32 H 0.08 1.53 6.94 -2.39 -0.02 1.52 16 33 H 0.08 3.32 7.09 -2.39 -0.02 3.30 16 34 H 0.10 2.94 6.67 -2.39 -0.02 2.93 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.03 1.39 6.64 -2.39 -0.02 1.37 16 37 H 0.04 1.60 6.57 -2.39 -0.02 1.58 16 38 H -0.01 -0.86 6.09 -2.39 -0.01 -0.87 16 39 H -0.01 -0.67 7.74 -2.39 -0.02 -0.69 16 40 H 0.26 15.41 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -73.70 321.63 1.37 -72.32 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.42 Total: 19.41 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.13 Total: 10.33 kcal Atomic # 7 Polarization: -142.44 SS G_CDS: -6.36 Total: -148.80 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.70 1.37 -72.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128741147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.864 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds