Wall clock time and date at job start Mon Mar 30 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47509 * 2 1 4 4 C 1.50696 * 109.47588 * 183.39168 * 3 2 1 5 5 C 1.39170 * 120.86401 * 91.76496 * 4 3 2 6 6 N 1.38628 * 120.48807 * 0.02562 * 5 4 3 7 7 N 1.33170 * 119.03046 * 180.02562 * 5 4 3 8 8 C 1.31755 * 120.87639 * 0.02562 * 7 5 4 9 9 N 1.31729 * 121.91217 * 359.97438 * 8 7 5 10 10 C 1.33198 * 120.88373 * 0.02562 * 9 8 7 11 11 N 1.38623 * 120.48505 * 179.97438 * 10 9 8 12 12 C 1.46902 * 111.00170 * 307.30023 * 11 10 9 13 13 C 1.46902 * 111.00320 * 71.25963 * 11 10 9 14 14 H 1.08999 * 109.47030 * 54.99641 * 13 11 10 15 15 C 1.53001 * 109.46907 * 294.99686 * 13 11 10 16 16 C 1.50699 * 109.47112 * 174.99644 * 13 11 10 17 17 H 1.07994 * 120.00266 * 0.02562 * 16 13 11 18 18 C 1.37885 * 119.99628 * 179.97438 * 16 13 11 19 19 N 1.31507 * 120.00037 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99846 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46798 * 90.00192 * 20 18 16 22 22 H 1.48492 * 109.47179 * 210.00226 * 20 18 16 23 23 H 1.48505 * 109.47255 * 330.00724 * 20 18 16 24 24 H 1.09000 * 109.46717 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47037 * 299.99739 * 1 2 3 26 26 H 1.08998 * 109.47160 * 59.99846 * 1 2 3 27 27 H 1.09009 * 109.47391 * 240.00024 * 2 1 3 28 28 H 1.09005 * 109.47505 * 120.00237 * 2 1 3 29 29 H 1.09007 * 109.46643 * 63.39077 * 3 2 1 30 30 H 1.08997 * 109.46868 * 303.39871 * 3 2 1 31 31 H 0.96996 * 120.00549 * 180.02562 * 6 5 4 32 32 H 0.97001 * 119.99788 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.04526 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46627 * 55.77215 * 12 11 10 35 35 H 1.09006 * 109.46930 * 175.76550 * 12 11 10 36 36 H 1.08994 * 109.47116 * 295.76587 * 12 11 10 37 37 H 1.08996 * 109.47376 * 179.97438 * 15 13 11 38 38 H 1.08998 * 109.47215 * 300.00381 * 15 13 11 39 39 H 1.09001 * 109.46887 * 60.00349 * 15 13 11 40 40 H 0.97001 * 120.00166 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5447 1.4434 -0.0841 5 6 4.1909 1.5041 -1.3151 6 7 3.4595 1.5657 -2.4911 7 7 5.5222 1.5022 -1.3469 8 6 6.2251 1.4433 -0.2340 9 7 5.6507 1.3848 0.9500 10 6 4.3239 1.3823 1.0669 11 7 3.7281 1.3199 2.3171 12 6 4.2494 0.1865 3.0927 13 6 3.9032 2.5825 3.0474 14 1 3.5258 3.4072 2.4428 15 6 5.3893 2.8016 3.3381 16 6 3.1409 2.5216 4.3459 17 1 2.5826 1.6337 4.6032 18 6 3.1571 3.5992 5.2060 19 7 3.8374 4.6802 4.8929 20 14 2.2116 3.5240 6.8153 21 1 3.0902 2.9773 7.8804 22 1 1.7673 4.8897 7.1926 23 1 1.0259 2.6449 6.6522 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.7272 1.9385 0.9189 30 1 1.6278 1.9736 -0.8579 31 1 3.9172 1.6074 -3.3453 32 1 2.4900 1.5671 -2.4598 33 1 7.3034 1.4431 -0.2942 34 1 5.3348 0.2606 3.1596 35 1 3.8215 0.2048 4.0951 36 1 3.9785 -0.7468 2.5990 37 1 5.5193 3.7386 3.8795 38 1 5.7667 1.9769 3.9425 39 1 5.9406 2.8457 2.3988 40 1 3.8485 5.4384 5.4978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133225338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:19 Heat of formation + Delta-G solvation = 54.979151 kcal Electronic energy + Delta-G solvation = -20971.217737 eV Core-core repulsion = 18014.221024 eV Total energy + Delta-G solvation = -2956.996713 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73596 -37.35039 -35.79359 -34.19749 -32.81204 -31.21388 -30.30981 -28.60491 -26.53833 -25.31626 -25.11322 -22.78537 -22.23035 -20.79960 -19.84106 -18.15061 -17.07121 -16.19853 -15.56994 -15.09051 -14.76445 -14.53839 -14.37603 -14.17229 -13.85750 -13.44995 -12.97352 -12.85887 -12.15962 -11.82347 -11.77037 -11.43238 -11.24902 -11.11765 -11.02064 -10.85832 -10.68619 -10.61241 -10.37280 -10.20527 -10.08281 -9.93321 -9.07500 -9.06408 -8.51198 -8.37385 -7.89273 -7.51830 -6.02070 -4.07442 1.52485 1.83220 3.30214 3.36920 3.40064 3.56022 4.29606 4.38596 4.58160 4.74711 5.11758 5.24227 5.27637 5.30159 5.39305 5.55260 5.61407 5.94462 6.01572 6.09580 6.14420 6.17902 6.33071 6.46244 6.53102 6.64249 6.72004 6.80373 6.95571 7.09545 7.16834 7.22627 7.43404 7.56504 7.73604 7.81564 7.90879 8.05347 8.33045 8.56736 8.76885 8.96409 9.56917 11.04416 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.006750 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.191893 B = 4147.220631 C = 4950.543162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.052 4.052 4 C -0.232 4.232 5 C 0.433 3.567 6 N -0.844 5.844 7 N -0.594 5.594 8 C 0.328 3.672 9 N -0.571 5.571 10 C 0.389 3.611 11 N -0.488 5.488 12 C 0.039 3.961 13 C 0.221 3.779 14 H 0.036 0.964 15 C -0.169 4.169 16 C -0.503 4.503 17 H 0.065 0.935 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.401 0.599 32 H 0.408 0.592 33 H 0.185 0.815 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 -7.236 -11.642 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.090 4.090 4 C -0.243 4.243 5 C 0.189 3.811 6 N -0.389 5.389 7 N -0.320 5.320 8 C 0.037 3.963 9 N -0.293 5.293 10 C 0.156 3.844 11 N -0.211 5.211 12 C -0.108 4.108 13 C 0.117 3.883 14 H 0.053 0.947 15 C -0.228 4.228 16 C -0.542 4.542 17 H 0.083 0.917 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.231 0.769 32 H 0.240 0.760 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.767 -7.121 -11.596 13.722 hybrid contribution -0.542 0.285 0.690 0.923 sum -2.309 -6.836 -10.905 13.076 Atomic orbital electron populations 1.21763 0.96050 1.01100 1.01798 1.21431 0.95173 0.96620 1.01749 1.20144 0.89024 0.96930 1.02928 1.20576 0.98231 1.14042 0.91470 1.18231 0.88230 0.88243 0.86437 1.42117 1.08755 1.82804 1.05274 1.67885 1.05495 1.24612 1.34006 1.24342 1.00002 0.89763 0.82187 1.68842 1.13089 1.19480 1.27867 1.20180 0.86051 0.85527 0.92623 1.60525 1.52567 1.07735 1.00232 1.22209 0.98908 0.90910 0.98797 1.19341 0.93182 0.83273 0.92514 0.94653 1.22441 0.98014 1.02688 0.99656 1.21043 1.29841 1.01191 1.02116 0.91695 1.24910 0.95583 0.95302 0.98295 1.69909 1.41295 1.04766 1.36973 0.86503 0.80168 0.77233 0.83536 1.20744 1.21315 1.19805 0.93241 0.92152 0.93325 0.93339 0.91253 0.88802 0.92952 0.76943 0.76044 0.79824 0.94222 0.89824 0.94169 0.90058 0.95123 0.94851 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.15 0.37 -1.33 16 2 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 3 C -0.05 -0.78 4.76 -27.88 -0.13 -0.91 16 4 C -0.23 -4.03 5.20 -103.95 -0.54 -4.58 16 5 C 0.43 6.83 7.80 -154.71 -1.21 5.62 16 6 N -0.84 -9.50 8.98 31.19 0.28 -9.22 16 7 N -0.59 -9.87 10.47 -13.88 -0.15 -10.01 16 8 C 0.33 5.58 12.28 -92.24 -1.13 4.45 16 9 N -0.57 -11.25 7.01 -13.89 -0.10 -11.34 16 10 C 0.39 7.82 5.22 -154.71 -0.81 7.01 16 11 N -0.49 -10.50 3.84 -174.66 -0.67 -11.17 16 12 C 0.04 0.79 8.61 60.07 0.52 1.30 16 13 C 0.22 5.57 2.32 -68.86 -0.16 5.41 16 14 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 15 C -0.17 -4.25 8.06 37.16 0.30 -3.95 16 16 C -0.50 -13.44 7.83 -34.44 -0.27 -13.71 16 17 H 0.06 1.71 6.80 -52.49 -0.36 1.35 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 20 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.69 7.61 -51.93 -0.40 1.29 16 30 H 0.05 0.66 6.58 -51.93 -0.34 0.32 16 31 H 0.40 3.79 8.95 -40.82 -0.37 3.43 16 32 H 0.41 3.81 6.91 -40.82 -0.28 3.53 16 33 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.04 0.82 6.22 -51.93 -0.32 0.50 16 35 H 0.08 1.74 6.31 -51.93 -0.33 1.41 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 38 H 0.03 0.75 6.57 -51.93 -0.34 0.41 16 39 H 0.03 0.80 5.76 -51.93 -0.30 0.50 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -29.74 316.81 -9.43 -39.17 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.86 Total: 7.25 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.32 Total: -0.78 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.01 Total: -66.41 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.74 -9.43 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133225338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.151 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds