Wall clock time and date at job start Mon Mar 30 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38539 * 120.00135 * 2 1 4 4 C 1.39669 * 120.52726 * 359.97281 * 3 2 1 5 5 C 1.38079 * 118.32769 * 180.02562 * 4 3 2 6 6 C 1.50707 * 120.39618 * 179.97438 * 5 4 3 7 7 N 1.32575 * 119.20281 * 359.75301 * 5 4 3 8 8 C 1.31761 * 121.01437 * 0.50595 * 7 5 4 9 9 C 1.50699 * 119.08620 * 179.76023 * 8 7 5 10 10 N 1.46897 * 109.46951 * 269.72554 * 9 8 7 11 11 C 1.46903 * 110.99820 * 66.05022 * 10 9 8 12 12 C 1.46900 * 111.00093 * 189.99667 * 10 9 8 13 13 H 1.09000 * 109.46640 * 55.00217 * 12 10 9 14 14 C 1.52995 * 109.47259 * 295.00639 * 12 10 9 15 15 C 1.50695 * 109.47152 * 175.00052 * 12 10 9 16 16 H 1.07997 * 120.00446 * 5.59093 * 15 12 10 17 17 C 1.37883 * 119.99801 * 185.58411 * 15 12 10 18 18 N 1.31516 * 120.00014 * 198.29137 * 17 15 12 19 19 Si 1.86803 * 120.00001 * 18.57489 * 17 15 12 20 20 H 1.48502 * 109.46996 * 179.72365 * 19 17 15 21 21 H 1.48498 * 109.46761 * 299.71964 * 19 17 15 22 22 H 1.48496 * 109.47235 * 59.72150 * 19 17 15 23 23 N 1.31775 * 121.82924 * 359.47828 * 8 7 5 24 24 H 1.08992 * 109.46833 * 60.00566 * 1 2 3 25 25 H 1.09006 * 109.46693 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47101 * 299.99967 * 1 2 3 27 27 H 0.96998 * 120.00135 * 179.97438 * 2 1 3 28 28 H 1.07998 * 120.83899 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.46545 * 90.00203 * 6 5 4 30 30 H 1.09002 * 109.46927 * 209.99763 * 6 5 4 31 31 H 1.09002 * 109.47084 * 330.00321 * 6 5 4 32 32 H 1.08997 * 109.47334 * 149.72793 * 9 8 7 33 33 H 1.08997 * 109.46895 * 29.72566 * 9 8 7 34 34 H 1.08998 * 109.47081 * 183.95562 * 11 10 9 35 35 H 1.09008 * 109.46951 * 303.94762 * 11 10 9 36 36 H 1.08997 * 109.47794 * 63.94939 * 11 10 9 37 37 H 1.08997 * 109.47167 * 294.31181 * 14 12 10 38 38 H 1.09000 * 109.47599 * 54.31301 * 14 12 10 39 39 H 1.09005 * 109.47053 * 174.31555 * 14 12 10 40 40 H 0.97002 * 119.99810 * 355.24611 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1577 1.1998 0.0000 4 6 1.4706 2.4157 -0.0006 5 6 2.2064 3.5841 -0.0011 6 6 1.5128 4.9221 -0.0023 7 7 3.5303 3.5148 0.0040 8 6 4.1493 2.3516 -0.0005 9 6 5.6560 2.3235 0.0000 10 7 6.1460 2.3134 -1.3848 11 6 5.8202 3.5726 -2.0677 12 6 7.5902 2.0483 -1.4303 13 1 7.8059 1.1199 -0.9016 14 6 8.3417 3.2018 -0.7628 15 6 8.0331 1.9238 -2.8653 16 1 7.3343 2.1197 -3.6651 17 6 9.3305 1.5598 -3.1572 18 7 9.8254 1.7920 -4.3534 19 14 10.3830 0.7298 -1.8561 20 1 11.7256 0.4362 -2.4187 21 1 10.5236 1.6310 -0.6843 22 1 9.7365 -0.5377 -1.4310 23 7 3.4874 1.2122 0.0000 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8400 0.0004 28 1 0.3909 2.4415 -0.0006 29 1 1.3452 5.2453 1.0251 30 1 2.1359 5.6539 -0.5164 31 1 0.5556 4.8347 -0.5164 32 1 6.0025 1.4273 0.5145 33 1 6.0356 3.2069 0.5134 34 1 6.1316 3.5116 -3.1104 35 1 4.7449 3.7446 -2.0191 36 1 6.3422 4.3960 -1.5802 37 1 8.2075 4.1106 -1.3494 38 1 7.9502 3.3571 0.2425 39 1 9.4030 2.9594 -0.7061 40 1 9.2577 2.1557 -5.0508 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163830425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:48 Heat of formation + Delta-G solvation = 62.930052 kcal Electronic energy + Delta-G solvation = -20160.244118 eV Core-core repulsion = 17203.592182 eV Total energy + Delta-G solvation = -2956.651936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.86942 -37.46007 -36.38286 -34.04835 -32.65766 -31.38920 -29.46613 -28.37127 -27.31283 -26.55078 -24.89543 -23.98709 -21.99576 -21.24663 -19.06802 -18.28866 -17.23727 -16.63069 -15.63475 -15.29074 -15.07579 -14.80571 -14.39820 -14.03334 -13.81881 -13.57058 -13.17888 -12.96724 -12.69582 -12.56115 -12.33389 -12.09370 -11.86186 -11.44479 -11.29517 -10.92678 -10.79825 -10.74396 -10.38437 -10.25505 -9.74911 -9.69157 -9.44452 -8.96367 -8.86379 -8.19554 -8.07720 -7.26230 -6.38359 -3.95026 1.20849 1.54357 2.95634 3.42695 3.50009 3.65889 3.96920 4.21958 4.42707 4.55625 4.77008 4.88622 5.09514 5.12898 5.20211 5.27131 5.33614 5.36127 5.46664 5.55153 5.67989 5.85361 6.01980 6.07015 6.24085 6.34273 6.43793 6.47572 6.50855 6.73475 6.81603 6.88646 7.06518 7.26112 7.36460 7.59705 7.76331 8.10989 8.37797 8.52297 8.56935 9.06049 9.71398 11.02811 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.026476 B = 0.004791 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.317783 B = 5842.540100 C = 6323.202307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.722 5.722 3 C 0.434 3.566 4 C -0.305 4.305 5 C 0.198 3.802 6 C -0.102 4.102 7 N -0.554 5.554 8 C 0.390 3.610 9 C 0.114 3.886 10 N -0.516 5.516 11 C 0.039 3.961 12 C 0.189 3.811 13 H 0.033 0.967 14 C -0.188 4.188 15 C -0.584 4.584 16 H 0.063 0.937 17 C 0.030 3.970 18 N -0.909 5.909 19 Si 1.044 2.956 20 H -0.287 1.287 21 H -0.275 1.275 22 H -0.282 1.282 23 N -0.563 5.563 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.409 0.591 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.294 0.968 11.313 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.355 5.355 3 C 0.191 3.809 4 C -0.333 4.333 5 C 0.055 3.945 6 C -0.160 4.160 7 N -0.274 5.274 8 C 0.120 3.880 9 C -0.016 4.016 10 N -0.240 5.240 11 C -0.110 4.110 12 C 0.081 3.919 13 H 0.051 0.949 14 C -0.247 4.247 15 C -0.622 4.622 16 H 0.081 0.919 17 C -0.175 4.175 18 N -0.543 5.543 19 Si 0.873 3.127 20 H -0.213 1.213 21 H -0.202 1.202 22 H -0.209 1.209 23 N -0.287 5.287 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.244 0.756 28 H 0.153 0.847 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.265 0.001 11.351 20.662 hybrid contribution -2.052 0.803 0.043 2.204 sum -19.317 0.804 11.393 22.441 Atomic orbital electron populations 1.21605 0.78841 1.02944 1.01456 1.44186 1.05883 1.05401 1.80008 1.18574 0.88553 0.86566 0.87226 1.21829 1.01500 0.92506 1.17460 1.21360 0.89541 0.95297 0.88333 1.20714 0.99656 0.92454 1.03143 1.68184 1.09657 1.29502 1.20097 1.22911 0.97244 0.81923 0.85873 1.20848 0.84932 1.02046 0.93772 1.62240 1.17781 1.33535 1.10438 1.22241 0.98744 0.89902 1.00074 1.19663 0.81289 0.92807 0.98121 0.94916 1.22884 1.01985 1.02087 0.97726 1.21934 0.98456 1.51266 0.90522 0.91884 1.25670 0.96104 0.94992 1.00725 1.70868 1.37038 1.42117 1.04304 0.84070 0.76185 0.77050 0.75388 1.21266 1.20167 1.20871 1.67795 1.06238 1.32353 1.22267 0.92484 0.90171 0.92579 0.75550 0.84729 0.90132 0.90003 0.90672 0.89116 0.92584 0.91031 0.93488 0.95994 0.93049 0.95733 0.92338 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 9.96 59.85 0.60 1.24 16 2 N -0.72 -7.91 5.87 -67.05 -0.39 -8.30 16 3 C 0.43 6.39 7.71 -154.78 -1.19 5.20 16 4 C -0.30 -3.95 9.08 -39.11 -0.35 -4.30 16 5 C 0.20 2.79 6.81 -82.33 -0.56 2.23 16 6 C -0.10 -0.99 10.21 36.01 0.37 -0.63 16 7 N -0.55 -9.58 9.09 -7.07 -0.06 -9.65 16 8 C 0.39 7.28 6.42 -157.24 -1.01 6.27 16 9 C 0.11 2.23 4.85 -4.98 -0.02 2.21 16 10 N -0.52 -11.73 4.73 -237.74 -1.13 -12.86 16 11 C 0.04 0.84 8.67 60.07 0.52 1.36 16 12 C 0.19 4.65 1.93 -68.87 -0.13 4.52 16 13 H 0.03 0.82 6.67 -51.93 -0.35 0.47 16 14 C -0.19 -4.24 8.12 37.15 0.30 -3.94 16 15 C -0.58 -16.69 8.31 -34.44 -0.29 -16.97 16 16 H 0.06 1.96 6.78 -52.49 -0.36 1.61 16 17 C 0.03 0.87 5.34 -17.82 -0.10 0.77 16 18 N -0.91 -28.21 13.70 55.43 0.76 -27.45 16 19 Si 1.04 25.49 26.46 -169.99 -4.50 20.99 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.17 5.53 56.52 0.31 -5.86 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 N -0.56 -10.14 10.37 -9.96 -0.10 -10.25 16 24 H 0.06 0.37 7.97 -51.93 -0.41 -0.04 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.33 7.97 -51.93 -0.41 -0.08 16 27 H 0.41 4.26 8.95 -40.82 -0.37 3.90 16 28 H 0.13 1.29 6.87 -52.49 -0.36 0.93 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.09 1.72 8.00 -51.93 -0.42 1.31 16 33 H 0.06 1.06 6.81 -51.93 -0.35 0.71 16 34 H 0.07 1.70 6.43 -51.93 -0.33 1.36 16 35 H 0.05 0.97 6.34 -51.92 -0.33 0.64 16 36 H 0.02 0.46 6.41 -51.93 -0.33 0.13 16 37 H 0.05 1.18 6.71 -51.93 -0.35 0.83 16 38 H 0.02 0.48 6.49 -51.93 -0.34 0.14 16 39 H 0.06 1.35 4.88 -51.93 -0.25 1.09 16 40 H 0.27 8.27 8.73 -40.82 -0.36 7.92 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -33.46 315.89 -8.42 -41.89 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.89 Total: 2.90 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.87 Total: -2.03 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -0.93 Total: -68.50 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.50 Total: 20.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.46 -8.42 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163830425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.816 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds