Wall clock time and date at job start Mon Mar 30 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38539 * 120.00135 * 2 1 4 4 C 1.39669 * 120.52726 * 359.97281 * 3 2 1 5 5 C 1.38079 * 118.32769 * 180.02562 * 4 3 2 6 6 C 1.50707 * 120.39618 * 179.97438 * 5 4 3 7 7 N 1.32575 * 119.20281 * 359.75301 * 5 4 3 8 8 C 1.31761 * 121.01437 * 0.50595 * 7 5 4 9 9 C 1.50699 * 119.08620 * 179.76023 * 8 7 5 10 10 N 1.46897 * 109.46951 * 269.72554 * 9 8 7 11 11 C 1.46903 * 110.99820 * 66.05022 * 10 9 8 12 12 C 1.46900 * 111.00093 * 189.99667 * 10 9 8 13 13 H 1.09000 * 109.46640 * 55.00217 * 12 10 9 14 14 C 1.52995 * 109.47259 * 295.00639 * 12 10 9 15 15 C 1.50695 * 109.47152 * 175.00052 * 12 10 9 16 16 H 1.07997 * 120.00446 * 5.59093 * 15 12 10 17 17 C 1.37883 * 119.99801 * 185.58411 * 15 12 10 18 18 N 1.31516 * 120.00014 * 198.29137 * 17 15 12 19 19 Si 1.86803 * 120.00001 * 18.57489 * 17 15 12 20 20 H 1.48502 * 109.46996 * 179.72365 * 19 17 15 21 21 H 1.48498 * 109.46761 * 299.71964 * 19 17 15 22 22 H 1.48496 * 109.47235 * 59.72150 * 19 17 15 23 23 N 1.31775 * 121.82924 * 359.47828 * 8 7 5 24 24 H 1.08992 * 109.46833 * 60.00566 * 1 2 3 25 25 H 1.09006 * 109.46693 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47101 * 299.99967 * 1 2 3 27 27 H 0.96998 * 120.00135 * 179.97438 * 2 1 3 28 28 H 1.07998 * 120.83899 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.46545 * 90.00203 * 6 5 4 30 30 H 1.09002 * 109.46927 * 209.99763 * 6 5 4 31 31 H 1.09002 * 109.47084 * 330.00321 * 6 5 4 32 32 H 1.08997 * 109.47334 * 149.72793 * 9 8 7 33 33 H 1.08997 * 109.46895 * 29.72566 * 9 8 7 34 34 H 1.08998 * 109.47081 * 183.95562 * 11 10 9 35 35 H 1.09008 * 109.46951 * 303.94762 * 11 10 9 36 36 H 1.08997 * 109.47794 * 63.94939 * 11 10 9 37 37 H 1.08997 * 109.47167 * 294.31181 * 14 12 10 38 38 H 1.09000 * 109.47599 * 54.31301 * 14 12 10 39 39 H 1.09005 * 109.47053 * 174.31555 * 14 12 10 40 40 H 0.97002 * 119.99810 * 355.24611 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1577 1.1998 0.0000 4 6 1.4706 2.4157 -0.0006 5 6 2.2064 3.5841 -0.0011 6 6 1.5128 4.9221 -0.0023 7 7 3.5303 3.5148 0.0040 8 6 4.1493 2.3516 -0.0005 9 6 5.6560 2.3235 0.0000 10 7 6.1460 2.3134 -1.3848 11 6 5.8202 3.5726 -2.0677 12 6 7.5902 2.0483 -1.4303 13 1 7.8059 1.1199 -0.9016 14 6 8.3417 3.2018 -0.7628 15 6 8.0331 1.9238 -2.8653 16 1 7.3343 2.1197 -3.6651 17 6 9.3305 1.5598 -3.1572 18 7 9.8254 1.7920 -4.3534 19 14 10.3830 0.7298 -1.8561 20 1 11.7256 0.4362 -2.4187 21 1 10.5236 1.6310 -0.6843 22 1 9.7365 -0.5377 -1.4310 23 7 3.4874 1.2122 0.0000 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8400 0.0004 28 1 0.3909 2.4415 -0.0006 29 1 1.3452 5.2453 1.0251 30 1 2.1359 5.6539 -0.5164 31 1 0.5556 4.8347 -0.5164 32 1 6.0025 1.4273 0.5145 33 1 6.0356 3.2069 0.5134 34 1 6.1316 3.5116 -3.1104 35 1 4.7449 3.7446 -2.0191 36 1 6.3422 4.3960 -1.5802 37 1 8.2075 4.1106 -1.3494 38 1 7.9502 3.3571 0.2425 39 1 9.4030 2.9594 -0.7061 40 1 9.2577 2.1557 -5.0508 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163830425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:45 Heat of formation + Delta-G solvation = 37.679486 kcal Electronic energy + Delta-G solvation = -20161.339065 eV Core-core repulsion = 17203.592182 eV Total energy + Delta-G solvation = -2957.746883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00674 -39.14933 -37.38613 -35.30488 -34.58636 -32.66447 -31.18202 -29.50316 -28.60972 -27.38925 -26.88830 -25.71161 -22.96975 -22.67087 -20.96164 -19.38283 -19.35534 -17.65162 -17.23537 -16.34340 -16.22279 -15.99876 -15.73165 -15.56783 -15.28683 -14.80768 -14.47980 -14.40759 -14.05192 -13.65969 -13.57702 -13.30624 -13.21319 -13.14556 -12.92326 -12.55508 -12.53703 -12.21969 -11.90256 -11.74226 -11.56349 -11.46910 -10.99477 -10.57541 -10.29810 -10.15113 -9.14740 -9.01687 -8.71052 -6.28843 0.06189 0.44917 1.47984 1.57586 1.75401 2.08407 2.52310 2.73266 3.06556 3.11363 3.37789 3.50045 3.85416 4.17790 4.29204 4.35402 4.38314 4.42824 4.50312 4.58676 4.62834 4.65681 4.68225 4.75104 4.78309 4.83550 4.89031 4.94170 5.01029 5.06420 5.18993 5.39832 5.50507 5.78160 5.88036 6.07654 6.23663 6.26694 6.49462 6.63182 6.73601 7.39341 7.47417 8.68458 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.026476 B = 0.004791 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.317783 B = 5842.540100 C = 6323.202307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.716 5.716 3 C 0.417 3.583 4 C -0.294 4.294 5 C 0.182 3.818 6 C -0.097 4.097 7 N -0.576 5.576 8 C 0.368 3.632 9 C 0.120 3.880 10 N -0.534 5.534 11 C 0.056 3.944 12 C 0.189 3.811 13 H 0.037 0.963 14 C -0.179 4.179 15 C -0.585 4.585 16 H 0.020 0.980 17 C -0.020 4.020 18 N -0.939 5.939 19 Si 1.083 2.917 20 H -0.290 1.290 21 H -0.239 1.239 22 H -0.266 1.266 23 N -0.594 5.594 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.409 0.591 28 H 0.172 0.828 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.027 0.973 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.370 0.841 13.818 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.348 5.348 3 C 0.173 3.827 4 C -0.322 4.322 5 C 0.040 3.960 6 C -0.154 4.154 7 N -0.297 5.297 8 C 0.098 3.902 9 C -0.009 4.009 10 N -0.258 5.258 11 C -0.093 4.093 12 C 0.082 3.918 13 H 0.055 0.945 14 C -0.237 4.237 15 C -0.623 4.623 16 H 0.038 0.962 17 C -0.218 4.218 18 N -0.576 5.576 19 Si 0.905 3.095 20 H -0.216 1.216 21 H -0.163 1.163 22 H -0.192 1.192 23 N -0.320 5.320 24 H 0.081 0.919 25 H 0.124 0.876 26 H 0.087 0.913 27 H 0.245 0.755 28 H 0.189 0.811 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.426 -0.122 13.866 23.868 hybrid contribution -1.647 0.808 -0.779 1.993 sum -21.073 0.686 13.087 24.816 Atomic orbital electron populations 1.21918 0.76145 1.05064 1.02269 1.44478 1.07501 1.04306 1.78517 1.18993 0.87935 0.88515 0.87297 1.22187 1.03201 0.91346 1.15447 1.22095 0.88745 0.97593 0.87567 1.20823 1.00186 0.89856 1.04568 1.68150 1.11525 1.28923 1.21124 1.22584 0.96784 0.82884 0.87969 1.20758 0.86332 1.02368 0.91458 1.62062 1.16633 1.34022 1.13077 1.22016 0.99239 0.89931 0.98102 1.19517 0.82945 0.93910 0.95476 0.94532 1.22709 1.01586 1.00419 0.99031 1.22085 0.97876 1.50389 0.91949 0.96158 1.27139 0.97988 0.94830 1.01830 1.71006 1.37114 1.44343 1.05122 0.83608 0.74415 0.77355 0.74167 1.21606 1.16344 1.19171 1.67702 1.08221 1.32423 1.23662 0.91905 0.87627 0.91265 0.75543 0.81059 0.88302 0.90835 0.87888 0.88931 0.91907 0.94252 0.92501 0.95451 0.94203 0.92565 0.92466 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 9.96 127.77 1.27 2.16 16 2 N -0.72 -14.14 5.87 -366.03 -2.15 -16.29 16 3 C 0.42 11.57 7.71 133.18 1.03 12.59 16 4 C -0.29 -6.81 9.08 22.58 0.20 -6.60 16 5 C 0.18 4.73 6.81 42.41 0.29 5.02 16 6 C -0.10 -1.60 10.21 71.24 0.73 -0.87 16 7 N -0.58 -19.35 9.09 -176.29 -1.60 -20.95 16 8 C 0.37 13.57 6.42 138.77 0.89 14.46 16 9 C 0.12 4.65 4.85 85.56 0.41 5.06 16 10 N -0.53 -24.44 4.73 -906.07 -4.29 -28.73 16 11 C 0.06 2.47 8.67 127.69 1.11 3.58 16 12 C 0.19 9.30 1.93 44.17 0.09 9.39 16 13 H 0.04 1.79 6.67 -2.39 -0.02 1.77 16 14 C -0.18 -7.81 8.12 71.98 0.58 -7.22 16 15 C -0.58 -34.45 8.31 25.60 0.21 -34.24 16 16 H 0.02 1.34 6.78 -2.91 -0.02 1.32 16 17 C -0.02 -1.20 5.34 84.66 0.45 -0.75 16 18 N -0.94 -60.27 13.70 21.45 0.29 -59.98 16 19 Si 1.08 50.64 26.46 68.60 1.82 52.46 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.24 -9.77 5.53 99.48 0.55 -9.22 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 N -0.59 -21.10 10.37 -185.43 -1.92 -23.03 16 24 H 0.06 0.59 7.97 -2.39 -0.02 0.57 16 25 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.07 0.55 7.97 -2.39 -0.02 0.53 16 27 H 0.41 7.91 8.95 -92.71 -0.83 7.08 16 28 H 0.17 2.53 6.87 -2.91 -0.02 2.51 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 32 H 0.09 3.46 8.00 -2.39 -0.02 3.44 16 33 H 0.06 2.29 6.81 -2.39 -0.02 2.28 16 34 H 0.04 1.96 6.43 -2.39 -0.02 1.95 16 35 H 0.06 2.39 6.34 -2.38 -0.02 2.37 16 36 H 0.03 1.16 6.41 -2.39 -0.02 1.15 16 37 H 0.04 1.80 6.71 -2.39 -0.02 1.78 16 38 H 0.06 2.09 6.49 -2.39 -0.02 2.07 16 39 H 0.06 2.49 4.88 -2.38 -0.01 2.48 16 40 H 0.25 16.34 8.73 -92.71 -0.81 15.53 16 Total: -1.00 -75.53 315.89 -0.56 -76.09 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.03 Total: 17.84 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 7.27 Total: 2.58 kcal Atomic # 7 Polarization: -139.30 SS G_CDS: -9.67 Total: -148.97 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 1.82 Total: 52.46 kcal Total: -75.53 -0.56 -76.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163830425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.770 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds