Wall clock time and date at job start Mon Mar 30 2020 04:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47373 * 28.28100 * 4 3 2 6 6 C 1.46506 * 119.99600 * 269.99435 * 5 4 3 7 7 C 1.34773 * 120.00431 * 89.99893 * 5 4 3 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 5 4 9 9 N 1.34777 * 120.00097 * 179.72742 * 7 5 4 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 5 11 11 H 1.09000 * 110.01484 * 325.05664 * 10 9 7 12 12 C 1.53876 * 110.03221 * 86.44933 * 10 9 7 13 13 C 1.54271 * 106.59658 * 119.28464 * 12 10 9 14 14 C 1.54897 * 104.19612 * 23.60752 * 13 12 10 15 15 H 1.08997 * 110.75261 * 80.37028 * 14 13 12 16 16 C 1.50695 * 110.75653 * 203.55854 * 14 13 12 17 17 H 1.08002 * 120.00229 * 118.54141 * 16 14 13 18 18 C 1.37879 * 120.00201 * 298.54814 * 16 14 13 19 19 N 1.31520 * 119.99712 * 359.97438 * 18 16 14 20 20 Si 1.86791 * 120.00222 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47051 * 59.99978 * 20 18 16 22 22 H 1.48498 * 109.47565 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47437 * 300.00073 * 20 18 16 24 24 C 1.54264 * 110.02677 * 203.61600 * 10 9 7 25 25 H 1.08998 * 109.47301 * 331.71811 * 1 2 3 26 26 H 1.09000 * 109.47029 * 91.72283 * 1 2 3 27 27 H 1.09006 * 109.46847 * 211.72176 * 1 2 3 28 28 H 1.08999 * 109.47470 * 268.27083 * 4 3 2 29 29 H 1.09006 * 109.46847 * 148.27824 * 4 3 2 30 30 H 1.08994 * 109.47014 * 270.00064 * 6 5 4 31 31 H 1.09003 * 109.47017 * 30.00282 * 6 5 4 32 32 H 1.09002 * 109.46900 * 149.99874 * 6 5 4 33 33 H 0.97000 * 119.99736 * 0.26819 * 9 7 5 34 34 H 1.08997 * 110.03277 * 238.56367 * 12 10 9 35 35 H 1.09002 * 110.03307 * 359.95289 * 12 10 9 36 36 H 1.09001 * 110.48504 * 142.28550 * 13 12 10 37 37 H 1.08998 * 110.48382 * 264.93448 * 13 12 10 38 38 H 0.97001 * 119.99490 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.49143 * 335.78431 * 24 10 9 40 40 H 1.09007 * 110.48470 * 98.43046 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0018 0.0000 5 7 4.6074 -1.2140 -0.6544 6 6 4.8528 -2.4231 0.1358 7 6 4.8321 -1.2204 -1.9833 8 8 4.6281 -0.2171 -2.6392 9 7 5.2876 -2.3374 -2.5843 10 6 5.5376 -2.3425 -4.0279 11 1 4.8042 -1.7161 -4.5357 12 6 6.9593 -1.8307 -4.3185 13 6 7.7049 -2.9799 -5.0281 14 6 6.5757 -3.8364 -5.6531 15 1 6.2257 -3.3932 -6.5853 16 6 7.0417 -5.2516 -5.8789 17 1 6.5477 -6.0696 -5.3755 18 6 8.0986 -5.5023 -6.7280 19 7 8.6999 -4.5062 -7.3413 20 14 8.6766 -7.2564 -7.0073 21 1 7.5635 -8.0602 -7.5732 22 1 9.8186 -7.2562 -7.9566 23 1 9.1069 -7.8477 -5.7148 24 6 5.4687 -3.7847 -4.5709 25 1 -0.3634 0.9050 0.4869 26 1 -0.3633 -0.0309 -1.0272 27 1 -0.3633 -0.8742 0.5404 28 1 4.4813 0.0332 1.0272 29 1 4.4805 0.8764 -0.5404 30 1 5.8822 -2.4203 0.4940 31 1 4.1720 -2.4453 0.9868 32 1 4.6866 -3.3031 -0.4855 33 1 5.4501 -3.1379 -2.0611 34 1 6.9160 -0.9565 -4.9681 35 1 7.4631 -1.5778 -3.3855 36 1 8.3603 -2.5868 -5.8053 37 1 8.2748 -3.5669 -4.3079 38 1 9.4437 -4.6826 -7.9384 39 1 5.6776 -4.5018 -3.7770 40 1 4.4922 -3.9791 -5.0146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298052362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:32 Heat of formation + Delta-G solvation = 11.438154 kcal Electronic energy + Delta-G solvation = -19644.515979 eV Core-core repulsion = 16653.338435 eV Total energy + Delta-G solvation = -2991.177543 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09682 -37.40132 -35.71953 -34.15426 -33.46802 -31.91848 -29.84802 -28.11963 -27.14153 -27.08590 -25.26465 -23.70164 -20.36294 -19.72159 -18.96878 -17.86416 -17.17965 -16.59194 -15.96041 -15.41822 -14.67179 -14.53699 -14.25317 -14.08508 -13.79954 -13.64782 -13.47076 -13.09821 -12.86874 -12.72673 -12.39210 -12.23040 -11.74188 -11.08067 -10.96832 -10.89000 -10.59368 -10.32354 -10.19852 -9.91149 -9.80984 -9.72226 -9.48584 -9.20379 -8.93928 -8.78623 -8.44603 -8.34176 -5.99381 -4.03059 2.23051 2.64108 3.15311 3.31782 3.37141 3.38724 3.39688 4.15527 4.18227 4.44449 4.93045 5.04591 5.24308 5.32438 5.32793 5.36997 5.45857 5.49002 5.54109 5.60321 5.71806 5.74466 5.88752 6.31894 6.38363 6.41312 6.62983 6.70769 6.78083 6.93124 6.99509 7.01840 7.31159 7.40200 7.55858 7.74153 7.90853 8.04687 8.15063 8.44193 8.80916 8.98767 9.60862 11.09662 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.036255 B = 0.003568 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.112550 B = 7844.894922 C = 7948.583496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.182 4.182 3 C -0.200 4.200 4 C 0.248 3.752 5 N -0.636 5.636 6 C 0.080 3.920 7 C 0.703 3.297 8 O -0.589 6.589 9 N -0.731 5.731 10 C 0.155 3.845 11 H 0.078 0.922 12 C -0.135 4.135 13 C -0.100 4.100 14 C 0.052 3.948 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.120 4.120 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.393 0.607 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 5.786 16.533 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.183 4.183 3 C -0.201 4.201 4 C 0.125 3.875 5 N -0.374 5.374 6 C -0.063 4.063 7 C 0.405 3.595 8 O -0.466 6.466 9 N -0.386 5.386 10 C 0.051 3.949 11 H 0.097 0.903 12 C -0.173 4.173 13 C -0.138 4.138 14 C 0.033 3.967 15 H 0.050 0.950 16 C -0.553 4.553 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.159 4.159 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.767 6.548 15.885 19.764 hybrid contribution 0.430 -1.409 0.166 1.482 sum -9.337 5.139 16.051 19.267 Atomic orbital electron populations 1.18854 0.84793 1.02777 1.03133 1.22460 0.93948 1.00197 1.01711 1.23002 0.94249 1.01857 1.01000 1.18050 0.82856 0.88475 0.98136 1.47043 1.70615 1.13139 1.06609 1.21736 1.01373 0.86919 0.96319 1.15974 0.78161 0.84326 0.81069 1.90902 1.59421 1.33106 1.63198 1.45688 1.70009 1.12692 1.10210 1.21762 0.97274 0.98718 0.77193 0.90344 1.22663 0.95208 0.99662 0.99808 1.22307 0.98897 0.94297 0.98319 1.19542 0.89594 0.95387 0.92149 0.94975 1.21051 1.15591 0.92093 1.26600 0.92740 1.24976 0.96537 0.96753 0.95635 1.69956 1.22752 1.30544 1.29375 0.86699 0.78231 0.85299 0.77959 1.20341 1.21364 1.20365 1.22755 1.00577 0.92530 1.00004 0.90226 0.90171 0.90362 0.88412 0.87519 0.92261 0.91055 0.91260 0.77126 0.92605 0.93261 0.91239 0.93575 0.93008 0.92202 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.32 10.32 34.37 0.35 0.03 16 2 C -0.18 -2.23 14.13 -37.12 -0.52 -2.75 16 3 C -0.20 -2.60 13.68 -37.12 -0.51 -3.10 16 4 C 0.25 2.85 5.88 -6.83 -0.04 2.81 16 5 N -0.64 -8.19 2.83 -190.72 -0.54 -8.73 16 6 C 0.08 0.72 10.20 59.85 0.61 1.33 16 7 C 0.70 11.91 8.26 -86.92 -0.72 11.19 16 8 O -0.59 -12.25 15.60 5.28 0.08 -12.17 16 9 N -0.73 -11.87 4.86 -57.58 -0.28 -12.15 16 10 C 0.15 2.94 3.23 -66.81 -0.22 2.72 16 11 H 0.08 1.59 7.60 -51.93 -0.39 1.20 16 12 C -0.13 -2.71 6.59 -25.61 -0.17 -2.88 16 13 C -0.10 -2.33 5.57 -25.07 -0.14 -2.47 16 14 C 0.05 1.27 2.81 -89.78 -0.25 1.02 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 16 C -0.52 -13.85 8.55 -34.44 -0.29 -14.15 16 17 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 18 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 19 N -0.89 -25.34 12.02 55.43 0.67 -24.68 16 20 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.12 -2.42 5.95 -25.07 -0.15 -2.57 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.11 1.34 7.42 -51.93 -0.39 0.96 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.07 0.61 6.37 -51.93 -0.33 0.28 16 33 H 0.39 5.41 6.07 -40.82 -0.25 5.16 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 36 H 0.07 1.77 7.37 -51.93 -0.38 1.39 16 37 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 40 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -32.56 334.33 -8.50 -41.07 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.31 Total: 2.79 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.14 Total: -7.18 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.15 Total: -45.56 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.56 -8.50 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298052362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.506 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds