Wall clock time and date at job start Mon Mar 30 2020 04:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47373 * 28.28100 * 4 3 2 6 6 C 1.46506 * 119.99600 * 269.99435 * 5 4 3 7 7 C 1.34773 * 120.00431 * 89.99893 * 5 4 3 8 8 O 1.21593 * 119.99894 * 359.97438 * 7 5 4 9 9 N 1.34777 * 120.00097 * 179.72742 * 7 5 4 10 10 C 1.46504 * 119.99854 * 180.27545 * 9 7 5 11 11 H 1.09000 * 110.01484 * 325.05664 * 10 9 7 12 12 C 1.53876 * 110.03221 * 86.44933 * 10 9 7 13 13 C 1.54271 * 106.59658 * 119.28464 * 12 10 9 14 14 C 1.54897 * 104.19612 * 23.60752 * 13 12 10 15 15 H 1.08997 * 110.75261 * 80.37028 * 14 13 12 16 16 C 1.50695 * 110.75653 * 203.55854 * 14 13 12 17 17 H 1.08002 * 120.00229 * 118.54141 * 16 14 13 18 18 C 1.37879 * 120.00201 * 298.54814 * 16 14 13 19 19 N 1.31520 * 119.99712 * 359.97438 * 18 16 14 20 20 Si 1.86791 * 120.00222 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47051 * 59.99978 * 20 18 16 22 22 H 1.48498 * 109.47565 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47437 * 300.00073 * 20 18 16 24 24 C 1.54264 * 110.02677 * 203.61600 * 10 9 7 25 25 H 1.08998 * 109.47301 * 331.71811 * 1 2 3 26 26 H 1.09000 * 109.47029 * 91.72283 * 1 2 3 27 27 H 1.09006 * 109.46847 * 211.72176 * 1 2 3 28 28 H 1.08999 * 109.47470 * 268.27083 * 4 3 2 29 29 H 1.09006 * 109.46847 * 148.27824 * 4 3 2 30 30 H 1.08994 * 109.47014 * 270.00064 * 6 5 4 31 31 H 1.09003 * 109.47017 * 30.00282 * 6 5 4 32 32 H 1.09002 * 109.46900 * 149.99874 * 6 5 4 33 33 H 0.97000 * 119.99736 * 0.26819 * 9 7 5 34 34 H 1.08997 * 110.03277 * 238.56367 * 12 10 9 35 35 H 1.09002 * 110.03307 * 359.95289 * 12 10 9 36 36 H 1.09001 * 110.48504 * 142.28550 * 13 12 10 37 37 H 1.08998 * 110.48382 * 264.93448 * 13 12 10 38 38 H 0.97001 * 119.99490 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.49143 * 335.78431 * 24 10 9 40 40 H 1.09007 * 110.48470 * 98.43046 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0018 0.0000 5 7 4.6074 -1.2140 -0.6544 6 6 4.8528 -2.4231 0.1358 7 6 4.8321 -1.2204 -1.9833 8 8 4.6281 -0.2171 -2.6392 9 7 5.2876 -2.3374 -2.5843 10 6 5.5376 -2.3425 -4.0279 11 1 4.8042 -1.7161 -4.5357 12 6 6.9593 -1.8307 -4.3185 13 6 7.7049 -2.9799 -5.0281 14 6 6.5757 -3.8364 -5.6531 15 1 6.2257 -3.3932 -6.5853 16 6 7.0417 -5.2516 -5.8789 17 1 6.5477 -6.0696 -5.3755 18 6 8.0986 -5.5023 -6.7280 19 7 8.6999 -4.5062 -7.3413 20 14 8.6766 -7.2564 -7.0073 21 1 7.5635 -8.0602 -7.5732 22 1 9.8186 -7.2562 -7.9566 23 1 9.1069 -7.8477 -5.7148 24 6 5.4687 -3.7847 -4.5709 25 1 -0.3634 0.9050 0.4869 26 1 -0.3633 -0.0309 -1.0272 27 1 -0.3633 -0.8742 0.5404 28 1 4.4813 0.0332 1.0272 29 1 4.4805 0.8764 -0.5404 30 1 5.8822 -2.4203 0.4940 31 1 4.1720 -2.4453 0.9868 32 1 4.6866 -3.3031 -0.4855 33 1 5.4501 -3.1379 -2.0611 34 1 6.9160 -0.9565 -4.9681 35 1 7.4631 -1.5778 -3.3855 36 1 8.3603 -2.5868 -5.8053 37 1 8.2748 -3.5669 -4.3079 38 1 9.4437 -4.6826 -7.9384 39 1 5.6776 -4.5018 -3.7770 40 1 4.4922 -3.9791 -5.0146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298052362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:32 Heat of formation + Delta-G solvation = -7.678370 kcal Electronic energy + Delta-G solvation = -19645.344934 eV Core-core repulsion = 16653.338435 eV Total energy + Delta-G solvation = -2992.006498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37884 -38.99280 -36.90203 -35.46007 -34.77219 -33.67039 -30.74279 -29.93505 -28.68902 -27.90539 -26.48666 -25.49874 -21.76084 -21.34087 -20.65885 -19.08328 -18.48856 -18.07286 -17.27278 -16.77214 -16.54332 -15.90296 -15.62600 -15.29833 -14.67284 -14.58596 -14.43977 -14.29959 -14.03517 -13.85898 -13.71522 -13.57819 -13.18938 -12.98224 -12.74205 -12.58400 -12.42918 -12.09036 -11.66864 -11.39989 -11.33759 -11.08458 -10.86328 -10.80353 -10.66017 -10.43995 -10.19108 -9.65953 -8.07931 -6.18667 1.24017 1.45187 1.46239 1.53707 1.73695 2.04406 2.14982 2.46609 3.05356 3.22687 3.37490 3.91517 4.04454 4.20220 4.21975 4.30020 4.51958 4.66086 4.69801 4.76371 4.77910 4.78816 4.80345 4.86963 4.93743 5.02760 5.04851 5.07986 5.15896 5.29050 5.41580 5.45063 5.67586 5.69581 5.87397 5.96065 6.01312 6.38656 6.66797 6.91091 6.95522 7.48973 7.53632 9.00371 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.036255 B = 0.003568 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.112550 B = 7844.894922 C = 7948.583496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.189 4.189 3 C -0.236 4.236 4 C 0.245 3.755 5 N -0.629 5.629 6 C 0.073 3.927 7 C 0.698 3.302 8 O -0.634 6.634 9 N -0.722 5.722 10 C 0.168 3.832 11 H 0.065 0.935 12 C -0.123 4.123 13 C -0.088 4.088 14 C 0.041 3.959 15 H -0.001 1.001 16 C -0.529 4.529 17 H 0.060 0.940 18 C 0.010 3.990 19 N -0.920 5.920 20 Si 0.955 3.045 21 H -0.272 1.272 22 H -0.289 1.289 23 H -0.268 1.268 24 C -0.105 4.105 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.408 0.592 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.259 0.741 39 H 0.075 0.925 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 4.585 18.859 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.190 4.190 3 C -0.237 4.237 4 C 0.123 3.877 5 N -0.366 5.366 6 C -0.069 4.069 7 C 0.399 3.601 8 O -0.515 6.515 9 N -0.379 5.379 10 C 0.063 3.937 11 H 0.083 0.917 12 C -0.162 4.162 13 C -0.127 4.127 14 C 0.022 3.978 15 H 0.017 0.983 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.188 4.188 19 N -0.560 5.560 20 Si 0.781 3.219 21 H -0.197 1.197 22 H -0.215 1.215 23 H -0.193 1.193 24 C -0.143 4.143 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.156 0.844 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.246 0.754 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.639 5.314 18.279 21.807 hybrid contribution 0.641 -1.001 -0.527 1.300 sum -9.997 4.313 17.752 20.825 Atomic orbital electron populations 1.19098 0.82399 1.04614 1.03828 1.23469 0.95359 0.99198 1.01023 1.23464 0.95136 1.03116 1.01989 1.18268 0.82457 0.87292 0.99732 1.47109 1.69314 1.14830 1.05323 1.22022 1.03178 0.85172 0.96511 1.16166 0.77979 0.83591 0.82324 1.90871 1.61260 1.34665 1.64739 1.45382 1.70035 1.13402 1.09039 1.21352 0.95897 0.97537 0.78943 0.91711 1.22527 0.95774 0.98128 0.99764 1.22075 0.98230 0.95000 0.97362 1.19526 0.91512 0.94478 0.92286 0.98260 1.21443 1.15566 0.93252 1.26493 0.92195 1.25790 0.96834 1.00670 0.95530 1.70105 1.23211 1.32593 1.30055 0.85663 0.77661 0.80534 0.78084 1.19693 1.21488 1.19286 1.22552 0.99255 0.93529 0.98994 0.88237 0.89922 0.88528 0.84426 0.89274 0.90367 0.88891 0.90964 0.75395 0.93284 0.92057 0.94291 0.94182 0.93200 0.90660 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.61 10.32 70.18 0.72 0.11 16 2 C -0.19 -4.37 14.13 31.13 0.44 -3.93 16 3 C -0.24 -5.85 13.68 31.13 0.43 -5.43 16 4 C 0.24 5.27 5.88 84.57 0.50 5.77 16 5 N -0.63 -14.98 2.83 -875.59 -2.48 -17.47 16 6 C 0.07 1.07 10.20 127.77 1.30 2.38 16 7 C 0.70 22.92 8.26 179.06 1.48 24.40 16 8 O -0.63 -26.51 15.60 -4.01 -0.06 -26.57 16 9 N -0.72 -22.33 4.86 -454.34 -2.21 -24.53 16 10 C 0.17 6.30 3.23 45.71 0.15 6.45 16 11 H 0.06 2.65 7.60 -2.39 -0.02 2.63 16 12 C -0.12 -4.97 6.59 31.32 0.21 -4.77 16 13 C -0.09 -4.19 5.57 31.67 0.18 -4.01 16 14 C 0.04 2.03 2.81 -10.25 -0.03 2.00 16 15 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 16 C -0.53 -28.46 8.55 25.60 0.22 -28.24 16 17 H 0.06 3.08 7.78 -2.91 -0.02 3.06 16 18 C 0.01 0.58 5.33 84.65 0.45 1.03 16 19 N -0.92 -53.63 12.02 21.45 0.26 -53.38 16 20 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C -0.11 -4.13 5.95 31.67 0.19 -3.95 16 25 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.14 1.77 8.07 -2.39 -0.02 1.75 16 29 H 0.09 2.23 7.42 -2.38 -0.02 2.21 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.01 8.07 -2.39 -0.02 0.99 16 32 H 0.07 1.03 6.37 -2.39 -0.02 1.02 16 33 H 0.41 10.17 6.07 -92.71 -0.56 9.60 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.32 7.92 -2.39 -0.02 2.30 16 36 H 0.04 2.06 7.37 -2.39 -0.02 2.04 16 37 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 38 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.07 2.72 7.63 -2.39 -0.02 2.71 16 40 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -71.57 334.33 4.23 -67.34 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.47 Total: 17.80 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 6.23 Total: -8.19 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -4.43 Total: -95.37 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.06 Total: -26.57 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -71.57 4.23 -67.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298052362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.661 kcal (2) G-P(sol) polarization free energy of solvation -71.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds