Wall clock time and date at job start Mon Mar 30 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99972 * 2 1 4 4 C 1.46894 * 111.00314 * 123.95499 * 2 1 3 5 5 C 1.53002 * 109.47252 * 170.00015 * 4 2 1 6 6 H 1.09001 * 109.46900 * 59.99858 * 5 4 2 7 7 O 1.42906 * 109.47171 * 300.00287 * 5 4 2 8 8 C 1.52996 * 109.47461 * 179.97438 * 5 4 2 9 9 N 1.46494 * 109.47504 * 185.00232 * 8 5 4 10 10 C 1.39688 * 120.00194 * 180.02562 * 9 8 5 11 11 C 1.39333 * 119.95211 * 359.71880 * 10 9 8 12 12 C 1.38472 * 120.42541 * 179.72308 * 11 10 9 13 13 C 1.37697 * 120.32224 * 0.55579 * 12 11 10 14 14 C 1.40748 * 119.89354 * 359.72607 * 13 12 11 15 15 C 1.41410 * 120.20826 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99930 * 150.19114 * 15 14 13 17 17 C 1.39938 * 119.99740 * 330.19068 * 15 14 13 18 18 N 1.30822 * 119.99804 * 161.72834 * 17 15 14 19 19 Si 1.86797 * 120.00026 * 341.73197 * 17 15 14 20 20 H 1.48500 * 109.47415 * 95.41107 * 19 17 15 21 21 H 1.48500 * 109.46968 * 215.41066 * 19 17 15 22 22 H 1.48502 * 109.46998 * 335.41069 * 19 17 15 23 23 C 1.38277 * 119.94801 * 180.02562 * 10 9 8 24 24 H 1.09003 * 109.46919 * 296.04036 * 1 2 3 25 25 H 1.08996 * 109.47400 * 56.04686 * 1 2 3 26 26 H 1.09008 * 109.47013 * 176.04461 * 1 2 3 27 27 H 1.08993 * 109.47373 * 183.95747 * 3 2 1 28 28 H 1.09010 * 109.46581 * 303.95675 * 3 2 1 29 29 H 1.08997 * 109.46820 * 63.95386 * 3 2 1 30 30 H 1.09001 * 109.47284 * 50.00108 * 4 2 1 31 31 H 1.08998 * 109.47464 * 289.99768 * 4 2 1 32 32 H 0.96706 * 113.99320 * 299.99774 * 7 5 4 33 33 H 1.09002 * 109.46908 * 305.00217 * 8 5 4 34 34 H 1.09002 * 109.46954 * 64.99661 * 8 5 4 35 35 H 0.97003 * 120.00061 * 359.97438 * 9 8 5 36 36 H 1.08002 * 119.78281 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.84157 * 180.28473 * 12 11 10 38 38 H 1.07996 * 120.05070 * 179.74389 * 13 12 11 39 39 H 0.96995 * 120.00415 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.16782 * 359.96995 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9702 6 1 3.9909 0.0194 0.9322 7 8 3.7640 -1.6648 -0.2428 8 6 4.0530 -1.7525 2.1553 9 7 5.5125 -1.8315 2.0571 10 6 6.2422 -2.5151 3.0326 11 6 5.5813 -3.1166 4.1016 12 6 6.2944 -3.8016 5.0710 13 6 7.6667 -3.8861 4.9949 14 6 8.3486 -3.2786 3.9239 15 6 9.7576 -3.3616 3.8389 16 1 10.2418 -3.3525 2.8736 17 6 10.5246 -3.4557 5.0056 18 7 11.7588 -3.8852 4.9441 19 14 9.7862 -2.9682 6.6506 20 1 9.2586 -4.1764 7.3341 21 1 10.8324 -2.3386 7.4957 22 1 8.6804 -2.0018 6.4299 23 6 7.6199 -2.5885 2.9391 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9164 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.5091 -1.7407 1.1756 31 1 1.7976 -0.2248 2.0627 32 1 3.3605 -2.5429 -0.2788 33 1 3.7778 -1.2559 3.0858 34 1 3.6330 -2.7583 2.1422 35 1 5.9722 -1.4097 1.3144 36 1 4.5055 -3.0522 4.1720 37 1 5.7721 -4.2682 5.8932 38 1 8.2188 -4.4179 5.7555 39 1 12.2906 -3.9501 5.7527 40 1 8.1336 -2.1189 2.1133 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313453686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:59 Heat of formation + Delta-G solvation = -25.439567 kcal Electronic energy + Delta-G solvation = -19445.809447 eV Core-core repulsion = 16453.032766 eV Total energy + Delta-G solvation = -2992.776681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.98870 -37.88610 -36.31819 -34.64421 -33.11981 -30.69041 -30.15886 -28.26524 -27.88503 -25.52343 -25.05187 -22.67310 -21.46702 -20.84611 -20.11219 -17.45165 -16.77842 -16.36015 -15.94301 -15.65587 -15.20353 -14.91755 -14.55502 -14.38193 -14.31865 -13.43987 -13.15484 -12.95538 -12.63546 -12.51480 -12.40898 -12.12228 -11.99060 -11.91280 -11.77253 -11.45111 -10.92838 -10.87299 -10.70502 -10.39746 -10.02696 -9.73444 -9.47388 -9.22398 -8.87899 -8.62249 -7.56849 -6.85741 -6.43784 -4.41500 2.72265 2.94662 3.19936 3.30056 3.41888 3.48525 4.07512 4.08939 4.41438 4.62204 4.64049 4.80986 4.90268 5.00369 5.05987 5.23316 5.24230 5.36976 5.41861 5.53780 5.57160 5.67169 5.73366 5.99845 6.06548 6.33335 6.60106 6.66612 6.69813 6.82847 6.88244 7.02494 7.35722 7.59162 7.64574 7.72048 7.82266 8.03106 8.38993 8.47817 8.54258 8.81626 8.94612 10.17247 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.042987 B = 0.003514 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.203777 B = 7965.356945 C = 8172.171355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.537 5.537 3 C 0.020 3.980 4 C 0.024 3.976 5 C 0.102 3.898 6 H 0.101 0.899 7 O -0.544 6.544 8 C 0.105 3.895 9 N -0.754 5.754 10 C 0.235 3.765 11 C -0.303 4.303 12 C -0.048 4.048 13 C -0.272 4.272 14 C 0.126 3.874 15 C -0.451 4.451 16 H 0.088 0.912 17 C 0.085 3.915 18 N -0.814 5.814 19 Si 0.915 3.085 20 H -0.272 1.272 21 H -0.295 1.295 22 H -0.245 1.245 23 C -0.277 4.277 24 H 0.023 0.977 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.373 0.627 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.395 0.605 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.283 0.717 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.686 6.902 -5.310 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.128 4.128 4 C -0.105 4.105 5 C 0.041 3.959 6 H 0.118 0.882 7 O -0.348 6.348 8 C -0.021 4.021 9 N -0.388 5.388 10 C 0.136 3.864 11 C -0.326 4.326 12 C -0.067 4.067 13 C -0.292 4.292 14 C 0.122 3.878 15 C -0.480 4.480 16 H 0.106 0.894 17 C -0.133 4.133 18 N -0.438 5.438 19 Si 0.742 3.258 20 H -0.198 1.198 21 H -0.222 1.222 22 H -0.168 1.168 23 C -0.301 4.301 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.220 0.780 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.229 0.771 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.120 7.134 -5.747 20.304 hybrid contribution -0.649 0.182 1.499 1.644 sum -18.769 7.316 -4.248 20.587 Atomic orbital electron populations 1.22402 0.87343 1.02277 1.00421 1.61882 1.07496 1.13980 1.42677 1.22459 1.01474 0.88519 1.00319 1.22804 0.96405 0.99211 0.92087 1.22115 0.92964 0.96240 0.84533 0.88157 1.86600 1.77407 1.33229 1.37600 1.21722 0.83436 0.99421 0.97534 1.44321 1.03698 1.62410 1.28322 1.17554 0.90668 0.90480 0.87742 1.19878 0.97136 1.15019 1.00539 1.20356 0.94017 0.96176 0.96187 1.20900 0.93721 1.10953 1.03649 1.17448 0.93270 0.87122 0.89962 1.19459 0.90038 1.43277 0.95212 0.89368 1.26141 0.94533 0.91068 1.01536 1.69706 1.09498 1.32772 1.31853 0.86268 0.79025 0.80400 0.80098 1.19815 1.22237 1.16775 1.20415 0.90887 1.13003 1.05770 0.95794 0.91305 0.91353 0.90849 0.91349 0.95724 0.90142 0.93700 0.77981 0.92518 0.92774 0.77134 0.89224 0.89092 0.88556 0.90636 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.57 60.06 0.57 0.75 16 2 N -0.54 -5.03 4.89 -251.26 -1.23 -6.25 16 3 C 0.02 0.18 9.32 60.07 0.56 0.74 16 4 C 0.02 0.22 4.62 -3.83 -0.02 0.20 16 5 C 0.10 1.10 2.87 -26.73 -0.08 1.02 16 6 H 0.10 1.14 6.55 -51.93 -0.34 0.80 16 7 O -0.54 -6.50 13.15 -35.23 -0.46 -6.97 16 8 C 0.11 1.38 4.55 -4.05 -0.02 1.36 16 9 N -0.75 -12.78 5.68 -58.69 -0.33 -13.11 16 10 C 0.24 5.03 6.64 -83.86 -0.56 4.47 16 11 C -0.30 -6.43 9.32 -39.09 -0.36 -6.79 16 12 C -0.05 -1.09 10.02 -39.69 -0.40 -1.48 16 13 C -0.27 -6.82 7.17 -38.83 -0.28 -7.10 16 14 C 0.13 3.31 5.10 -106.85 -0.55 2.77 16 15 C -0.45 -12.64 9.57 -37.74 -0.36 -13.00 16 16 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 17 C 0.09 2.31 5.40 -17.35 -0.09 2.22 16 18 N -0.81 -22.34 13.93 55.55 0.77 -21.56 16 19 Si 0.92 21.61 24.52 -169.99 -4.17 17.45 16 20 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.24 -5.94 6.86 56.52 0.39 -5.55 16 23 C -0.28 -6.68 9.63 -38.67 -0.37 -7.06 16 24 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.07 0.47 8.12 -51.92 -0.42 0.04 16 27 H 0.07 0.68 6.47 -51.93 -0.34 0.34 16 28 H 0.07 0.52 8.12 -51.92 -0.42 0.10 16 29 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 31 H 0.04 0.40 8.12 -51.93 -0.42 -0.03 16 32 H 0.37 3.49 9.05 45.56 0.41 3.90 16 33 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 34 H 0.05 0.70 7.95 -51.93 -0.41 0.29 16 35 H 0.39 6.45 8.48 -40.82 -0.35 6.10 16 36 H 0.09 1.67 6.70 -52.49 -0.35 1.32 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.10 2.41 4.73 -52.49 -0.25 2.17 16 39 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 40 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -30.02 323.78 -7.91 -37.93 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.42 Total: 9.54 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -1.95 Total: -21.90 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.79 Total: -40.93 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.46 Total: -6.97 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.17 Total: 17.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.02 -7.91 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313453686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.489 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds