Wall clock time and date at job start Mon Mar 30 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99972 * 2 1 4 4 C 1.46894 * 111.00314 * 123.95499 * 2 1 3 5 5 C 1.53002 * 109.47252 * 170.00015 * 4 2 1 6 6 H 1.09001 * 109.46900 * 59.99858 * 5 4 2 7 7 O 1.42906 * 109.47171 * 300.00287 * 5 4 2 8 8 C 1.52996 * 109.47461 * 179.97438 * 5 4 2 9 9 N 1.46494 * 109.47504 * 185.00232 * 8 5 4 10 10 C 1.39688 * 120.00194 * 180.02562 * 9 8 5 11 11 C 1.39333 * 119.95211 * 359.71880 * 10 9 8 12 12 C 1.38472 * 120.42541 * 179.72308 * 11 10 9 13 13 C 1.37697 * 120.32224 * 0.55579 * 12 11 10 14 14 C 1.40748 * 119.89354 * 359.72607 * 13 12 11 15 15 C 1.41410 * 120.20826 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99930 * 150.19114 * 15 14 13 17 17 C 1.39938 * 119.99740 * 330.19068 * 15 14 13 18 18 N 1.30822 * 119.99804 * 161.72834 * 17 15 14 19 19 Si 1.86797 * 120.00026 * 341.73197 * 17 15 14 20 20 H 1.48500 * 109.47415 * 95.41107 * 19 17 15 21 21 H 1.48500 * 109.46968 * 215.41066 * 19 17 15 22 22 H 1.48502 * 109.46998 * 335.41069 * 19 17 15 23 23 C 1.38277 * 119.94801 * 180.02562 * 10 9 8 24 24 H 1.09003 * 109.46919 * 296.04036 * 1 2 3 25 25 H 1.08996 * 109.47400 * 56.04686 * 1 2 3 26 26 H 1.09008 * 109.47013 * 176.04461 * 1 2 3 27 27 H 1.08993 * 109.47373 * 183.95747 * 3 2 1 28 28 H 1.09010 * 109.46581 * 303.95675 * 3 2 1 29 29 H 1.08997 * 109.46820 * 63.95386 * 3 2 1 30 30 H 1.09001 * 109.47284 * 50.00108 * 4 2 1 31 31 H 1.08998 * 109.47464 * 289.99768 * 4 2 1 32 32 H 0.96706 * 113.99320 * 299.99774 * 7 5 4 33 33 H 1.09002 * 109.46908 * 305.00217 * 8 5 4 34 34 H 1.09002 * 109.46954 * 64.99661 * 8 5 4 35 35 H 0.97003 * 120.00061 * 359.97438 * 9 8 5 36 36 H 1.08002 * 119.78281 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.84157 * 180.28473 * 12 11 10 38 38 H 1.07996 * 120.05070 * 179.74389 * 13 12 11 39 39 H 0.96995 * 120.00415 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.16782 * 359.96995 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9702 6 1 3.9909 0.0194 0.9322 7 8 3.7640 -1.6648 -0.2428 8 6 4.0530 -1.7525 2.1553 9 7 5.5125 -1.8315 2.0571 10 6 6.2422 -2.5151 3.0326 11 6 5.5813 -3.1166 4.1016 12 6 6.2944 -3.8016 5.0710 13 6 7.6667 -3.8861 4.9949 14 6 8.3486 -3.2786 3.9239 15 6 9.7576 -3.3616 3.8389 16 1 10.2418 -3.3525 2.8736 17 6 10.5246 -3.4557 5.0056 18 7 11.7588 -3.8852 4.9441 19 14 9.7862 -2.9682 6.6506 20 1 9.2586 -4.1764 7.3341 21 1 10.8324 -2.3386 7.4957 22 1 8.6804 -2.0018 6.4299 23 6 7.6199 -2.5885 2.9391 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9164 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.5091 -1.7407 1.1756 31 1 1.7976 -0.2248 2.0627 32 1 3.3605 -2.5429 -0.2788 33 1 3.7778 -1.2559 3.0858 34 1 3.6330 -2.7583 2.1422 35 1 5.9722 -1.4097 1.3144 36 1 4.5055 -3.0522 4.1720 37 1 5.7721 -4.2682 5.8932 38 1 8.2188 -4.4179 5.7555 39 1 12.2906 -3.9501 5.7527 40 1 8.1336 -2.1189 2.1133 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313453686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:58 Heat of formation + Delta-G solvation = -48.940900 kcal Electronic energy + Delta-G solvation = -19446.828542 eV Core-core repulsion = 16453.032766 eV Total energy + Delta-G solvation = -2993.795776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12530 -39.30949 -37.25212 -36.14468 -34.93009 -32.04718 -31.82316 -29.60121 -28.50455 -27.01372 -26.57427 -23.68272 -22.88275 -21.98029 -21.83858 -19.28800 -17.82188 -17.70239 -17.18731 -16.84106 -16.36848 -16.21479 -15.84993 -15.68438 -15.33599 -14.89098 -14.51979 -14.30246 -14.19911 -13.90313 -13.65909 -13.25465 -13.12750 -12.81266 -12.66999 -12.65286 -12.60290 -12.49872 -12.22082 -11.80811 -11.58384 -11.35605 -11.09945 -10.90289 -10.56348 -9.46884 -9.27330 -8.86670 -8.06916 -6.49342 0.86948 1.10715 1.29905 1.44880 1.53783 2.17882 2.54093 2.68262 3.05563 3.58310 3.64269 3.78050 4.03664 4.09167 4.29300 4.37116 4.42935 4.49382 4.58386 4.61836 4.70694 4.72450 4.75238 4.76770 4.99254 5.00875 5.02346 5.10061 5.11513 5.20020 5.55289 5.77315 5.87910 6.00038 6.01822 6.07667 6.12097 6.39714 6.71226 6.83314 6.85874 6.92971 7.09006 8.22576 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.042987 B = 0.003514 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.203777 B = 7965.356945 C = 8172.171355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.020 3.980 4 C 0.030 3.970 5 C 0.112 3.888 6 H 0.093 0.907 7 O -0.561 6.561 8 C 0.103 3.897 9 N -0.746 5.746 10 C 0.243 3.757 11 C -0.290 4.290 12 C -0.047 4.047 13 C -0.295 4.295 14 C 0.107 3.893 15 C -0.491 4.491 16 H 0.050 0.950 17 C 0.047 3.953 18 N -0.855 5.855 19 Si 0.973 3.027 20 H -0.258 1.258 21 H -0.280 1.280 22 H -0.255 1.255 23 C -0.299 4.299 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.384 0.616 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.292 0.708 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.441 7.358 -4.380 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.277 5.277 3 C -0.128 4.128 4 C -0.099 4.099 5 C 0.052 3.948 6 H 0.111 0.889 7 O -0.367 6.367 8 C -0.023 4.023 9 N -0.378 5.378 10 C 0.140 3.860 11 C -0.312 4.312 12 C -0.066 4.066 13 C -0.316 4.316 14 C 0.104 3.896 15 C -0.521 4.521 16 H 0.068 0.932 17 C -0.166 4.166 18 N -0.482 5.482 19 Si 0.797 3.203 20 H -0.183 1.183 21 H -0.207 1.207 22 H -0.178 1.178 23 C -0.323 4.323 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.911 7.597 -4.852 23.693 hybrid contribution 0.269 0.085 1.021 1.059 sum -21.642 7.682 -3.831 23.282 Atomic orbital electron populations 1.22435 0.86109 1.02895 1.00936 1.61869 1.08701 1.14242 1.42929 1.22455 1.00833 0.88574 1.00948 1.22716 0.94814 1.00025 0.92331 1.21981 0.94219 0.95301 0.83257 0.88924 1.86583 1.77889 1.34183 1.38067 1.21973 0.80642 1.00627 0.99017 1.44463 1.05459 1.60804 1.27042 1.17631 0.89909 0.89858 0.88582 1.20339 0.98992 1.12757 0.99138 1.20776 0.92997 0.95509 0.97300 1.20972 0.95183 1.11905 1.03494 1.17591 0.92676 0.87886 0.91437 1.19459 0.91478 1.46866 0.94295 0.93189 1.26843 0.94787 0.90692 1.04320 1.69734 1.10679 1.34594 1.33211 0.85380 0.78223 0.80211 0.76495 1.18343 1.20679 1.17844 1.20516 0.92574 1.13718 1.05524 0.95290 0.90784 0.90714 0.91928 0.90683 0.95165 0.88878 0.93063 0.76692 0.91576 0.91599 0.76907 0.85479 0.85459 0.89015 0.89718 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.57 127.69 1.22 1.51 16 2 N -0.55 -8.89 4.89 -948.84 -4.64 -13.52 16 3 C 0.02 0.30 9.32 127.69 1.19 1.50 16 4 C 0.03 0.44 4.62 86.30 0.40 0.84 16 5 C 0.11 2.12 2.87 30.59 0.09 2.20 16 6 H 0.09 1.92 6.55 -2.39 -0.02 1.90 16 7 O -0.56 -12.09 13.15 -148.98 -1.96 -14.05 16 8 C 0.10 2.29 4.55 86.38 0.39 2.68 16 9 N -0.75 -23.42 5.68 -339.59 -1.93 -25.35 16 10 C 0.24 9.87 6.64 38.16 0.25 10.12 16 11 C -0.29 -11.10 9.32 22.59 0.21 -10.89 16 12 C -0.05 -1.95 10.02 22.20 0.22 -1.73 16 13 C -0.30 -14.53 7.17 22.76 0.16 -14.37 16 14 C 0.11 5.78 5.10 -21.31 -0.11 5.67 16 15 C -0.49 -29.15 9.57 23.46 0.22 -28.93 16 16 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 17 C 0.05 2.66 5.40 85.26 0.46 3.12 16 18 N -0.86 -48.98 13.93 21.82 0.30 -48.67 16 19 Si 0.97 45.00 24.52 68.60 1.68 46.68 16 20 H -0.26 -11.23 6.71 99.48 0.67 -10.57 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.25 -12.05 6.86 99.48 0.68 -11.37 16 23 C -0.30 -14.61 9.63 22.86 0.22 -14.39 16 24 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.07 0.79 8.12 -2.38 -0.02 0.77 16 27 H 0.06 1.07 6.47 -2.39 -0.02 1.06 16 28 H 0.07 1.01 8.12 -2.38 -0.02 0.99 16 29 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 1.15 8.06 -2.39 -0.02 1.13 16 31 H 0.05 0.71 8.12 -2.39 -0.02 0.69 16 32 H 0.38 6.14 9.05 -74.05 -0.67 5.47 16 33 H 0.07 1.43 7.93 -2.39 -0.02 1.41 16 34 H 0.07 1.38 7.95 -2.39 -0.02 1.37 16 35 H 0.40 12.35 8.48 -92.71 -0.79 11.56 16 36 H 0.13 3.95 6.70 -2.91 -0.02 3.93 16 37 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 38 H 0.09 4.53 4.73 -2.91 -0.01 4.52 16 39 H 0.29 15.00 8.30 -92.71 -0.77 14.23 16 40 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -66.46 323.78 -2.08 -68.54 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.48 Total: 29.04 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 4.94 Total: -42.66 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -6.26 Total: -87.55 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.96 Total: -14.05 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.68 Total: 46.68 kcal Total: -66.46 -2.08 -68.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313453686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.596 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds