Wall clock time and date at job start Mon Mar 30 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99945 * 2 1 4 4 C 1.46901 * 110.99949 * 123.95233 * 2 1 3 5 5 C 1.53001 * 109.47090 * 76.37806 * 4 2 1 6 6 O 1.42904 * 109.47054 * 64.17800 * 5 4 2 7 7 N 1.46298 * 114.00326 * 180.02562 * 6 5 4 8 8 C 1.46893 * 111.00321 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47116 * 29.99148 * 8 7 6 10 10 C 1.50702 * 109.46721 * 270.00071 * 8 7 6 11 11 H 1.08002 * 120.00511 * 113.23531 * 10 8 7 12 12 C 1.37881 * 119.99974 * 293.22793 * 10 8 7 13 13 N 1.31522 * 119.99765 * 350.56582 * 12 10 8 14 14 Si 1.86792 * 120.00272 * 170.56132 * 12 10 8 15 15 H 1.48505 * 109.47194 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47344 * 120.00060 * 14 12 10 17 17 H 1.48502 * 109.47164 * 240.00281 * 14 12 10 18 18 C 1.50700 * 109.47433 * 149.99935 * 8 7 6 19 19 C 1.38232 * 119.99693 * 21.29472 * 18 8 7 20 20 C 1.38234 * 119.99777 * 180.02562 * 19 18 8 21 21 C 1.38237 * 120.00151 * 359.95667 * 20 19 18 22 22 C 1.38243 * 119.99906 * 359.97438 * 21 20 19 23 23 C 1.38230 * 119.99919 * 201.27248 * 18 8 7 24 24 H 1.08996 * 109.47036 * 296.04660 * 1 2 3 25 25 H 1.09001 * 109.46847 * 56.04552 * 1 2 3 26 26 H 1.09002 * 109.46795 * 176.04931 * 1 2 3 27 27 H 1.09004 * 109.46695 * 188.06859 * 3 2 1 28 28 H 1.08996 * 109.47003 * 308.06650 * 3 2 1 29 29 H 1.08998 * 109.46941 * 68.06790 * 3 2 1 30 30 H 1.09000 * 109.46881 * 316.38064 * 4 2 1 31 31 H 1.09001 * 109.47363 * 196.37988 * 4 2 1 32 32 H 1.09001 * 109.47347 * 304.17450 * 5 4 2 33 33 H 1.09003 * 109.47102 * 184.17054 * 5 4 2 34 34 H 1.00897 * 111.00001 * 56.03997 * 7 6 5 35 35 H 0.97000 * 119.99942 * 179.97438 * 13 12 10 36 36 H 1.07996 * 120.00643 * 359.97438 * 19 18 8 37 37 H 1.07997 * 120.00081 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00360 * 179.72240 * 21 20 19 39 39 H 1.07993 * 119.99971 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.99959 * 0.02562 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8611 -2.2628 0.8506 6 8 2.6783 -2.6082 -0.2697 7 7 2.6235 -4.0245 -0.6321 8 6 3.4856 -4.3061 -1.7876 9 1 4.3280 -3.6145 -1.7895 10 6 2.6936 -4.1361 -3.0584 11 1 2.9361 -3.3369 -3.7432 12 6 1.6593 -5.0010 -3.3470 13 7 1.4804 -6.0794 -2.6156 14 14 0.5120 -4.6412 -4.7765 15 1 0.9246 -3.3762 -5.4361 16 1 0.5784 -5.7545 -5.7570 17 1 -0.8787 -4.5069 -4.2734 18 6 3.9972 -5.7209 -1.6999 19 6 3.3256 -6.6521 -0.9302 20 6 3.7951 -7.9498 -0.8493 21 6 4.9358 -8.3163 -1.5389 22 6 5.6066 -7.3853 -2.3099 23 6 5.1377 -6.0874 -2.3896 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0756 1.3460 -0.1442 28 1 1.5341 1.9377 -0.8091 29 1 1.7673 1.8482 0.9533 30 1 1.4311 -0.5162 2.0361 31 1 3.0461 -0.5177 1.2878 32 1 0.8204 -2.4980 0.6274 33 1 2.1827 -2.8305 1.7237 34 1 1.6739 -4.3159 -0.8095 35 1 0.7525 -6.6877 -2.8184 36 1 2.4346 -6.3658 -0.3913 37 1 3.2707 -8.6773 -0.2476 38 1 5.3052 -9.3290 -1.4722 39 1 6.4979 -7.6716 -2.8483 40 1 5.6624 -5.3597 -2.9910 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379150876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:50 Heat of formation + Delta-G solvation = 38.760120 kcal Electronic energy + Delta-G solvation = -20258.207005 eV Core-core repulsion = 17268.214231 eV Total energy + Delta-G solvation = -2989.992774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.12588 -37.56563 -35.54306 -33.87457 -31.17263 -29.78111 -29.48105 -27.93418 -27.45781 -25.59115 -23.57619 -22.57466 -21.22067 -20.68469 -19.74985 -16.59430 -16.38861 -15.65566 -15.56030 -14.96031 -14.79112 -14.52659 -13.98929 -13.72216 -13.59413 -12.99692 -12.67832 -12.40696 -12.27037 -12.12595 -11.92618 -11.67004 -11.54939 -11.36842 -11.26377 -11.13018 -10.87161 -10.56719 -10.39818 -10.01586 -9.81455 -9.53471 -9.22956 -8.69128 -8.12132 -7.71652 -7.45201 -7.26630 -5.94007 -4.26461 2.63988 2.74422 3.22555 3.32052 3.37746 3.91593 4.11290 4.34212 5.07361 5.18038 5.21287 5.25952 5.41818 5.44386 5.65851 5.69735 5.77077 5.92762 5.95516 5.99676 6.04502 6.12677 6.14548 6.24167 6.47475 6.56418 6.78802 6.85893 6.98505 7.19610 7.20328 7.24308 7.33999 7.62431 7.71362 7.77042 7.83506 8.05409 8.28876 8.32781 8.64947 8.80363 9.42351 10.83916 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.006268 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.388107 B = 4466.308446 C = 5457.042197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.536 5.536 3 C 0.028 3.972 4 C 0.060 3.940 5 C 0.072 3.928 6 O -0.249 6.249 7 N -0.500 5.500 8 C 0.226 3.774 9 H 0.053 0.947 10 C -0.539 4.539 11 H 0.061 0.939 12 C 0.072 3.928 13 N -0.870 5.870 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.004 3.996 19 C -0.023 4.023 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.127 4.127 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.339 0.661 35 H 0.264 0.736 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 5.673 6.736 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.260 5.260 3 C -0.120 4.120 4 C -0.069 4.069 5 C -0.008 4.008 6 O -0.255 6.255 7 N -0.172 5.172 8 C 0.118 3.882 9 H 0.071 0.929 10 C -0.579 4.579 11 H 0.079 0.921 12 C -0.132 4.132 13 N -0.507 5.507 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C 0.003 3.997 19 C -0.042 4.042 20 C -0.167 4.167 21 C -0.168 4.168 22 C -0.163 4.163 23 C -0.146 4.146 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.155 0.845 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.478 5.277 6.686 8.531 hybrid contribution -1.880 0.591 -0.967 2.195 sum -1.402 5.868 5.719 8.313 Atomic orbital electron populations 1.22427 0.87676 1.02512 0.99725 1.61851 1.07529 1.13184 1.43424 1.22368 1.01113 0.88986 0.99565 1.22187 1.00594 0.93422 0.90709 1.22157 0.94763 0.93041 0.90804 1.90814 1.65583 1.21047 1.48015 1.67105 1.15323 0.93408 1.41412 1.18212 0.92577 0.89961 0.87420 0.92852 1.21596 1.15036 1.14200 1.07022 0.92095 1.25045 0.97637 0.93972 0.96560 1.69981 1.30365 1.10684 1.39665 0.86530 0.80680 0.78421 0.82412 1.19708 1.21010 1.20882 1.19580 0.91559 0.96016 0.92581 1.20640 0.96385 0.91458 0.95702 1.20904 0.97262 0.96820 1.01757 1.20701 0.97503 0.98038 1.00509 1.20690 1.00232 0.94005 1.01349 1.20688 0.97438 0.95783 1.00694 0.96246 0.91599 0.91131 0.91290 0.91693 0.96302 0.93751 0.90285 0.94489 0.93504 0.84485 0.92590 0.86387 0.88296 0.88443 0.88182 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.40 60.07 0.56 0.89 16 2 N -0.54 -8.14 4.88 -251.25 -1.23 -9.36 16 3 C 0.03 0.34 9.51 60.07 0.57 0.91 16 4 C 0.06 0.87 5.39 -3.82 -0.02 0.85 16 5 C 0.07 1.24 6.58 37.16 0.24 1.48 16 6 O -0.25 -5.53 11.16 -13.92 -0.16 -5.69 16 7 N -0.50 -11.76 5.84 -6.65 -0.04 -11.79 16 8 C 0.23 5.67 2.82 -70.02 -0.20 5.48 16 9 H 0.05 1.37 8.04 -51.93 -0.42 0.95 16 10 C -0.54 -14.52 8.82 -34.44 -0.30 -14.82 16 11 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 12 C 0.07 1.90 4.89 -17.81 -0.09 1.81 16 13 N -0.87 -22.72 9.03 55.43 0.50 -22.22 16 14 Si 0.89 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.00 0.10 4.24 -104.63 -0.44 -0.35 16 19 C -0.02 -0.53 6.93 -39.58 -0.27 -0.80 16 20 C -0.15 -3.12 10.05 -39.58 -0.40 -3.51 16 21 C -0.15 -2.96 10.05 -39.58 -0.40 -3.35 16 22 C -0.14 -2.93 10.05 -39.58 -0.40 -3.32 16 23 C -0.13 -2.86 9.73 -39.59 -0.39 -3.24 16 24 H 0.02 0.22 8.08 -51.93 -0.42 -0.20 16 25 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 26 H 0.07 1.00 6.85 -51.93 -0.36 0.65 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.54 7.95 -51.93 -0.41 0.13 16 31 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 32 H 0.04 0.64 6.84 -51.93 -0.36 0.29 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.34 8.35 7.30 -39.29 -0.29 8.06 16 35 H 0.26 6.69 8.31 -40.82 -0.34 6.36 16 36 H 0.12 2.80 6.64 -52.49 -0.35 2.45 16 37 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 328.77 15.07 4.95 4.95 Total: -1.00 -28.21 328.77 -8.86 -37.08 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.35 Total: 9.09 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.53 Total: -17.98 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.76 Total: -43.38 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.16 Total: -5.69 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.21 -8.86 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379150876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.837 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds