Wall clock time and date at job start Mon Mar 30 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99945 * 2 1 4 4 C 1.46901 * 110.99949 * 123.95233 * 2 1 3 5 5 C 1.53001 * 109.47090 * 76.37806 * 4 2 1 6 6 O 1.42904 * 109.47054 * 64.17800 * 5 4 2 7 7 N 1.46298 * 114.00326 * 180.02562 * 6 5 4 8 8 C 1.46893 * 111.00321 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47116 * 29.99148 * 8 7 6 10 10 C 1.50702 * 109.46721 * 270.00071 * 8 7 6 11 11 H 1.08002 * 120.00511 * 113.23531 * 10 8 7 12 12 C 1.37881 * 119.99974 * 293.22793 * 10 8 7 13 13 N 1.31522 * 119.99765 * 350.56582 * 12 10 8 14 14 Si 1.86792 * 120.00272 * 170.56132 * 12 10 8 15 15 H 1.48505 * 109.47194 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47344 * 120.00060 * 14 12 10 17 17 H 1.48502 * 109.47164 * 240.00281 * 14 12 10 18 18 C 1.50700 * 109.47433 * 149.99935 * 8 7 6 19 19 C 1.38232 * 119.99693 * 21.29472 * 18 8 7 20 20 C 1.38234 * 119.99777 * 180.02562 * 19 18 8 21 21 C 1.38237 * 120.00151 * 359.95667 * 20 19 18 22 22 C 1.38243 * 119.99906 * 359.97438 * 21 20 19 23 23 C 1.38230 * 119.99919 * 201.27248 * 18 8 7 24 24 H 1.08996 * 109.47036 * 296.04660 * 1 2 3 25 25 H 1.09001 * 109.46847 * 56.04552 * 1 2 3 26 26 H 1.09002 * 109.46795 * 176.04931 * 1 2 3 27 27 H 1.09004 * 109.46695 * 188.06859 * 3 2 1 28 28 H 1.08996 * 109.47003 * 308.06650 * 3 2 1 29 29 H 1.08998 * 109.46941 * 68.06790 * 3 2 1 30 30 H 1.09000 * 109.46881 * 316.38064 * 4 2 1 31 31 H 1.09001 * 109.47363 * 196.37988 * 4 2 1 32 32 H 1.09001 * 109.47347 * 304.17450 * 5 4 2 33 33 H 1.09003 * 109.47102 * 184.17054 * 5 4 2 34 34 H 1.00897 * 111.00001 * 56.03997 * 7 6 5 35 35 H 0.97000 * 119.99942 * 179.97438 * 13 12 10 36 36 H 1.07996 * 120.00643 * 359.97438 * 19 18 8 37 37 H 1.07997 * 120.00081 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00360 * 179.72240 * 21 20 19 39 39 H 1.07993 * 119.99971 * 179.97438 * 22 21 20 40 40 H 1.08007 * 119.99959 * 0.02562 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8611 -2.2628 0.8506 6 8 2.6783 -2.6082 -0.2697 7 7 2.6235 -4.0245 -0.6321 8 6 3.4856 -4.3061 -1.7876 9 1 4.3280 -3.6145 -1.7895 10 6 2.6936 -4.1361 -3.0584 11 1 2.9361 -3.3369 -3.7432 12 6 1.6593 -5.0010 -3.3470 13 7 1.4804 -6.0794 -2.6156 14 14 0.5120 -4.6412 -4.7765 15 1 0.9246 -3.3762 -5.4361 16 1 0.5784 -5.7545 -5.7570 17 1 -0.8787 -4.5069 -4.2734 18 6 3.9972 -5.7209 -1.6999 19 6 3.3256 -6.6521 -0.9302 20 6 3.7951 -7.9498 -0.8493 21 6 4.9358 -8.3163 -1.5389 22 6 5.6066 -7.3853 -2.3099 23 6 5.1377 -6.0874 -2.3896 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0756 1.3460 -0.1442 28 1 1.5341 1.9377 -0.8091 29 1 1.7673 1.8482 0.9533 30 1 1.4311 -0.5162 2.0361 31 1 3.0461 -0.5177 1.2878 32 1 0.8204 -2.4980 0.6274 33 1 2.1827 -2.8305 1.7237 34 1 1.6739 -4.3159 -0.8095 35 1 0.7525 -6.6877 -2.8184 36 1 2.4346 -6.3658 -0.3913 37 1 3.2707 -8.6773 -0.2476 38 1 5.3052 -9.3290 -1.4722 39 1 6.4979 -7.6716 -2.8483 40 1 5.6624 -5.3597 -2.9910 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379150876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:48 Heat of formation + Delta-G solvation = 21.747395 kcal Electronic energy + Delta-G solvation = -20258.944732 eV Core-core repulsion = 17268.214231 eV Total energy + Delta-G solvation = -2990.730501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -39.83211 -38.78137 -37.17672 -35.65627 -33.06756 -31.41295 -30.97261 -29.53622 -28.47144 -27.51726 -24.79658 -24.42344 -22.88410 -21.91808 -21.49602 -18.54204 -18.10229 -17.14962 -16.88280 -16.69132 -16.15849 -15.88059 -15.50431 -15.42247 -15.10677 -14.67851 -14.29209 -13.88171 -13.76791 -13.44093 -13.30147 -13.22235 -13.07547 -12.93830 -12.64252 -12.59863 -12.53216 -12.30460 -12.04255 -11.69960 -11.54425 -11.36648 -10.92658 -10.66210 -9.42477 -9.21299 -9.17522 -9.09679 -7.89907 -6.33142 0.94703 1.07914 1.34382 1.39013 1.48862 2.26333 2.38798 3.05221 3.08709 3.43015 4.06989 4.18209 4.33574 4.38935 4.42079 4.44606 4.46820 4.58060 4.63832 4.68609 4.73394 4.77821 4.79944 4.92882 5.00983 5.02838 5.05566 5.16066 5.26176 5.53887 5.62938 5.66269 5.89371 5.96930 6.06143 6.12151 6.17342 6.23962 6.47673 6.58778 6.69418 6.87996 7.36839 8.81467 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.006268 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.388107 B = 4466.308446 C = 5457.042197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.572 5.572 3 C 0.030 3.970 4 C 0.068 3.932 5 C 0.065 3.935 6 O -0.269 6.269 7 N -0.493 5.493 8 C 0.229 3.771 9 H 0.032 0.968 10 C -0.564 4.564 11 H 0.039 0.961 12 C 0.044 3.956 13 N -0.873 5.873 14 Si 0.944 3.056 15 H -0.281 1.281 16 H -0.281 1.281 17 H -0.275 1.275 18 C -0.021 4.021 19 C -0.038 4.038 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.147 4.147 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.329 0.671 35 H 0.265 0.735 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 4.932 7.225 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.297 5.297 3 C -0.117 4.117 4 C -0.061 4.061 5 C -0.013 4.013 6 O -0.277 6.277 7 N -0.164 5.164 8 C 0.121 3.879 9 H 0.050 0.950 10 C -0.603 4.603 11 H 0.057 0.943 12 C -0.160 4.160 13 N -0.508 5.508 14 Si 0.771 3.229 15 H -0.206 1.206 16 H -0.207 1.207 17 H -0.200 1.200 18 C -0.022 4.022 19 C -0.057 4.057 20 C -0.171 4.171 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.166 4.166 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.349 4.533 7.190 8.507 hybrid contribution -1.808 0.830 -1.068 2.258 sum -1.459 5.363 6.122 8.269 Atomic orbital electron populations 1.22396 0.86824 1.01747 1.01133 1.61790 1.08689 1.14963 1.44241 1.22363 1.00699 0.87717 1.00961 1.22134 1.01214 0.91073 0.91720 1.22464 0.93862 0.95473 0.89530 1.90786 1.66851 1.19972 1.50071 1.67095 1.14238 0.94723 1.40317 1.18113 0.91809 0.90653 0.87350 0.95003 1.21621 1.16652 1.14281 1.07745 0.94296 1.25503 0.98272 0.93819 0.98448 1.70101 1.30210 1.10537 1.39977 0.85732 0.79362 0.77744 0.80097 1.20584 1.20661 1.20041 1.19602 0.92889 0.95521 0.94232 1.20575 0.96303 0.92568 0.96207 1.21227 0.97797 0.96222 1.01863 1.21143 0.96499 0.99668 0.98909 1.21073 1.01056 0.92905 1.01008 1.20899 0.97439 0.97253 1.01000 0.93932 0.91151 0.92848 0.91853 0.91064 0.94199 0.90677 0.90236 0.94834 0.92543 0.85627 0.92520 0.87846 0.85841 0.84606 0.84899 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.40 127.69 1.20 1.89 16 2 N -0.57 -16.93 4.88 -948.82 -4.63 -21.56 16 3 C 0.03 0.70 9.51 127.69 1.21 1.92 16 4 C 0.07 1.89 5.39 86.30 0.47 2.35 16 5 C 0.07 2.27 6.58 71.98 0.47 2.75 16 6 O -0.27 -12.36 11.16 -50.16 -0.56 -12.92 16 7 N -0.49 -24.10 5.84 -174.97 -1.02 -25.12 16 8 C 0.23 11.99 2.82 43.42 0.12 12.11 16 9 H 0.03 1.74 8.04 -2.39 -0.02 1.72 16 10 C -0.56 -31.47 8.82 25.60 0.23 -31.24 16 11 H 0.04 2.27 7.83 -2.91 -0.02 2.25 16 12 C 0.04 2.32 4.89 84.65 0.41 2.74 16 13 N -0.87 -45.77 9.03 21.45 0.19 -45.58 16 14 Si 0.94 43.36 29.55 68.60 2.03 45.39 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 C -0.02 -1.04 4.24 -19.87 -0.08 -1.12 16 19 C -0.04 -1.74 6.93 22.27 0.15 -1.58 16 20 C -0.15 -6.09 10.05 22.27 0.22 -5.87 16 21 C -0.14 -5.25 10.05 22.27 0.22 -5.02 16 22 C -0.14 -5.44 10.05 22.27 0.22 -5.21 16 23 C -0.15 -6.61 9.73 22.27 0.22 -6.39 16 24 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 25 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 26 H 0.05 1.51 6.85 -2.39 -0.02 1.50 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.53 8.05 -2.39 -0.02 1.51 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.64 7.95 -2.39 -0.02 1.62 16 31 H 0.08 2.19 7.93 -2.39 -0.02 2.17 16 32 H 0.03 1.18 6.84 -2.39 -0.02 1.17 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.33 16.81 7.30 -89.70 -0.65 16.15 16 35 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 36 H 0.10 5.00 6.64 -2.91 -0.02 4.99 16 37 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 40 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -61.00 328.77 1.44 -59.56 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.35 Total: 32.92 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 5.07 Total: -32.69 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -5.46 Total: -92.26 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.56 Total: -12.92 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -61.00 1.44 -59.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379150876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.307 kcal (2) G-P(sol) polarization free energy of solvation -60.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds