Wall clock time and date at job start Mon Mar 30 2020 04:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47272 * 281.39811 * 3 2 1 5 5 C 1.37095 * 119.99793 * 94.23740 * 4 3 2 6 6 H 1.07994 * 120.00557 * 308.13886 * 5 4 3 7 7 C 1.38959 * 120.00131 * 128.14109 * 5 4 3 8 8 N 1.31410 * 119.99788 * 341.45885 * 7 5 4 9 9 Si 1.86793 * 120.00252 * 161.45263 * 7 5 4 10 10 H 1.48500 * 109.47063 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47600 * 240.00492 * 9 7 5 12 12 H 1.48506 * 109.46901 * 120.00045 * 9 7 5 13 13 C 1.34776 * 120.00206 * 274.23817 * 4 3 2 14 14 O 1.21292 * 119.99766 * 355.07717 * 13 4 3 15 15 C 1.50697 * 120.00185 * 175.07498 * 13 4 3 16 16 H 1.08998 * 109.47365 * 43.88262 * 15 13 4 17 17 C 1.52996 * 109.47193 * 283.88485 * 15 13 4 18 18 C 1.53004 * 109.47247 * 180.02562 * 17 15 13 19 19 C 1.53002 * 109.46917 * 59.99918 * 18 17 15 20 20 C 1.52996 * 109.47229 * 300.00093 * 19 18 17 21 21 C 1.53002 * 109.46938 * 163.88422 * 15 13 4 22 22 H 1.08996 * 109.47235 * 60.00533 * 21 15 13 23 23 C 1.53002 * 109.47269 * 299.99742 * 21 15 13 24 24 N 1.46890 * 109.47364 * 175.00383 * 23 21 15 25 25 H 4.40638 * 5.51393 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47412 * 161.40030 * 3 2 1 27 27 H 1.08999 * 109.47693 * 41.40115 * 3 2 1 28 28 H 0.97005 * 119.99575 * 1.20169 * 8 7 5 29 29 H 1.09010 * 109.47195 * 299.99909 * 17 15 13 30 30 H 1.08994 * 109.47310 * 59.99726 * 17 15 13 31 31 H 1.08996 * 109.46691 * 300.00170 * 18 17 15 32 32 H 1.08996 * 109.47282 * 179.97438 * 18 17 15 33 33 H 1.09004 * 109.47089 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47523 * 60.00226 * 19 18 17 35 35 H 1.09010 * 109.47195 * 300.00206 * 20 19 18 36 36 H 1.08994 * 109.47310 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46897 * 295.00642 * 23 21 15 38 38 H 1.08998 * 109.46712 * 55.00097 * 23 21 15 39 39 H 1.00901 * 111.00241 * 180.02562 * 24 23 21 40 40 H 1.00907 * 110.99755 * 303.95500 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2721 1.3540 5 6 3.4462 -1.5546 1.7248 6 1 2.7310 -2.3495 1.5737 7 6 4.6827 -1.8318 2.2952 8 7 5.6761 -0.9832 2.1547 9 14 4.9325 -3.4106 3.2617 10 1 3.6685 -4.1900 3.2720 11 1 5.3226 -3.0810 4.6561 12 1 6.0052 -4.2164 2.6248 13 6 3.2773 0.7378 2.2350 14 8 3.0875 1.8824 1.8815 15 6 3.6729 0.4448 3.6593 16 1 4.4770 -0.2911 3.6691 17 6 2.4663 -0.1082 4.4203 18 6 2.8678 -0.4050 5.8666 19 6 3.3471 0.8838 6.5376 20 6 4.5537 1.4367 5.7766 21 6 4.1526 1.7333 4.3307 22 1 3.3486 2.4691 4.3210 23 6 5.3593 2.2862 3.5697 24 7 5.7457 3.5834 4.1404 25 1 -1.0499 0.0002 0.0001 26 1 3.0089 0.9748 -0.3278 27 1 3.0098 -0.7700 -0.6796 28 1 5.5415 -0.1552 1.6677 29 1 1.6622 0.6278 4.4106 30 1 2.1246 -1.0260 3.9420 31 1 3.6720 -1.1407 5.8766 32 1 2.0081 -0.7985 6.4089 33 1 3.6335 0.6722 7.5678 34 1 2.5429 1.6195 6.5275 35 1 5.3580 0.7010 5.7867 36 1 4.8954 2.3546 6.2548 37 1 6.1929 1.5891 3.6546 38 1 5.0986 2.4145 2.5192 39 1 6.5409 3.9699 3.6543 40 1 4.9691 4.2277 4.1322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379614471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:13 Heat of formation + Delta-G solvation = 1.050387 kcal Electronic energy + Delta-G solvation = -21667.750216 eV Core-core repulsion = 18676.122225 eV Total energy + Delta-G solvation = -2991.627991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.68312 -37.22632 -35.09094 -33.92775 -33.19936 -31.07547 -30.19002 -29.62845 -26.57347 -24.65738 -23.89556 -22.35450 -20.41867 -19.86003 -18.99015 -17.96469 -17.04069 -15.65746 -15.54562 -14.78809 -14.63074 -14.12649 -13.94799 -13.81870 -13.67778 -13.42018 -13.19445 -12.53200 -12.32627 -12.03408 -11.86202 -11.46860 -11.27216 -11.23146 -11.07105 -10.51557 -10.37480 -10.32599 -10.19742 -9.96370 -9.85383 -9.70080 -9.52690 -9.34860 -8.75643 -8.31003 -8.07012 -7.70496 -6.78686 -4.32073 3.21417 3.22783 3.29429 3.41102 3.44089 3.86638 4.15564 4.75469 4.89645 5.06341 5.08798 5.32810 5.43101 5.46187 5.78919 5.98054 6.01157 6.10820 6.12889 6.20518 6.22366 6.24387 6.32600 6.44162 6.50655 6.53134 6.60963 6.68527 6.79945 6.81663 6.88813 6.93049 7.08604 7.34100 7.60022 7.62499 7.89336 8.07659 8.15715 8.23559 9.01519 9.31923 9.76336 10.50910 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.010452 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.592384 B = 2678.180440 C = 3397.640737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.161 4.161 3 C 0.205 3.795 4 N -0.462 5.462 5 C -0.420 4.420 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.866 5.866 9 Si 1.072 2.928 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.600 6.600 15 C -0.105 4.105 16 H 0.131 0.869 17 C -0.098 4.098 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.104 4.104 21 C -0.058 4.058 22 H 0.060 0.940 23 C 0.063 3.937 24 N -0.849 5.849 25 H 0.210 0.790 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.278 0.722 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.332 0.668 40 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 0.993 4.242 5.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.162 4.162 3 C 0.083 3.917 4 N -0.182 5.182 5 C -0.547 4.547 6 H 0.092 0.908 7 C -0.190 4.190 8 N -0.500 5.500 9 Si 0.897 3.103 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.208 1.208 13 C 0.297 3.703 14 O -0.485 6.485 15 C -0.127 4.127 16 H 0.148 0.852 17 C -0.136 4.136 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.142 4.142 21 C -0.077 4.077 22 H 0.079 0.921 23 C -0.067 4.067 24 N -0.377 5.377 25 H 0.227 0.773 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.143 0.857 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.402 0.248 5.545 5.725 hybrid contribution -1.645 1.169 -2.062 2.885 sum -3.047 1.417 3.483 4.839 Atomic orbital electron populations 1.24660 0.95690 1.03888 1.01757 1.24102 0.95311 0.97867 0.98959 1.18458 0.83049 1.01660 0.88540 1.43503 1.59497 1.07887 1.07323 1.20155 1.02633 0.85027 1.46934 0.90830 1.26520 0.90667 1.04667 0.97165 1.70695 1.30967 1.11315 1.36978 0.83441 0.76233 0.73849 0.76766 1.20603 1.20100 1.20820 1.20744 0.77713 0.84255 0.87598 1.90485 1.55840 1.21898 1.80284 1.21561 1.00971 0.99204 0.90948 0.85182 1.21298 0.96618 1.01261 0.94448 1.21544 1.00506 0.97541 0.95894 1.21561 0.98346 0.97349 0.98333 1.21466 0.97045 1.00693 0.94960 1.20828 0.96631 0.96221 0.94024 0.92144 1.21907 0.97660 0.90297 0.96814 1.58857 1.10817 1.06248 1.61777 0.77318 0.89953 0.89013 0.91081 0.93451 0.90602 0.91854 0.92649 0.92763 0.92671 0.92307 0.91495 0.91058 0.94153 0.85746 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.49 19.25 29.55 0.57 -3.92 16 2 C -0.16 -3.43 13.64 -37.13 -0.51 -3.93 16 3 C 0.21 4.57 5.86 -6.83 -0.04 4.53 16 4 N -0.46 -11.30 2.11 -117.94 -0.25 -11.54 16 5 C -0.42 -10.37 7.75 -14.93 -0.12 -10.49 16 6 H 0.07 1.85 7.90 -52.49 -0.41 1.43 16 7 C 0.02 0.44 3.30 -17.46 -0.06 0.38 16 8 N -0.87 -22.34 12.03 55.50 0.67 -21.67 16 9 Si 1.07 21.90 29.96 -169.99 -5.09 16.80 16 10 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 13 C 0.51 12.46 4.84 -10.99 -0.05 12.41 16 14 O -0.60 -15.79 14.10 5.55 0.08 -15.71 16 15 C -0.11 -2.32 1.16 -91.77 -0.11 -2.43 16 16 H 0.13 3.11 4.17 -51.93 -0.22 2.89 16 17 C -0.10 -1.97 5.10 -26.73 -0.14 -2.10 16 18 C -0.12 -1.98 5.92 -26.73 -0.16 -2.14 16 19 C -0.12 -1.86 5.92 -26.73 -0.16 -2.02 16 20 C -0.10 -1.83 5.09 -26.76 -0.14 -1.96 16 21 C -0.06 -1.15 1.47 -90.64 -0.13 -1.29 16 22 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 23 C 0.06 1.27 5.93 -3.83 -0.02 1.25 16 24 N -0.85 -14.02 9.08 -10.37 -0.09 -14.12 16 25 H 0.21 2.93 7.80 -54.09 -0.42 2.50 16 26 H 0.08 1.83 7.49 -51.93 -0.39 1.44 16 27 H 0.09 1.90 8.01 -51.93 -0.42 1.49 16 28 H 0.28 7.48 7.15 -40.82 -0.29 7.19 16 29 H 0.05 0.95 8.14 -51.92 -0.42 0.52 16 30 H 0.08 1.60 7.16 -51.93 -0.37 1.23 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.04 0.92 6.02 -51.93 -0.31 0.61 16 39 H 0.33 4.87 9.08 -39.29 -0.36 4.51 16 40 H 0.33 5.23 8.99 -39.29 -0.35 4.87 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -27.70 320.27 -7.03 -34.73 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -6.11 Total: 18.39 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.06 Total: -11.72 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.32 Total: -47.33 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.08 Total: -15.71 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.09 Total: 16.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.70 -7.03 -34.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379614471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.785 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds