Wall clock time and date at job start Mon Mar 30 2020 04:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47272 * 281.39811 * 3 2 1 5 5 C 1.37095 * 119.99793 * 94.23740 * 4 3 2 6 6 H 1.07994 * 120.00557 * 308.13886 * 5 4 3 7 7 C 1.38959 * 120.00131 * 128.14109 * 5 4 3 8 8 N 1.31410 * 119.99788 * 341.45885 * 7 5 4 9 9 Si 1.86793 * 120.00252 * 161.45263 * 7 5 4 10 10 H 1.48500 * 109.47063 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47600 * 240.00492 * 9 7 5 12 12 H 1.48506 * 109.46901 * 120.00045 * 9 7 5 13 13 C 1.34776 * 120.00206 * 274.23817 * 4 3 2 14 14 O 1.21292 * 119.99766 * 355.07717 * 13 4 3 15 15 C 1.50697 * 120.00185 * 175.07498 * 13 4 3 16 16 H 1.08998 * 109.47365 * 43.88262 * 15 13 4 17 17 C 1.52996 * 109.47193 * 283.88485 * 15 13 4 18 18 C 1.53004 * 109.47247 * 180.02562 * 17 15 13 19 19 C 1.53002 * 109.46917 * 59.99918 * 18 17 15 20 20 C 1.52996 * 109.47229 * 300.00093 * 19 18 17 21 21 C 1.53002 * 109.46938 * 163.88422 * 15 13 4 22 22 H 1.08996 * 109.47235 * 60.00533 * 21 15 13 23 23 C 1.53002 * 109.47269 * 299.99742 * 21 15 13 24 24 N 1.46890 * 109.47364 * 175.00383 * 23 21 15 25 25 H 4.40638 * 5.51393 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47412 * 161.40030 * 3 2 1 27 27 H 1.08999 * 109.47693 * 41.40115 * 3 2 1 28 28 H 0.97005 * 119.99575 * 1.20169 * 8 7 5 29 29 H 1.09010 * 109.47195 * 299.99909 * 17 15 13 30 30 H 1.08994 * 109.47310 * 59.99726 * 17 15 13 31 31 H 1.08996 * 109.46691 * 300.00170 * 18 17 15 32 32 H 1.08996 * 109.47282 * 179.97438 * 18 17 15 33 33 H 1.09004 * 109.47089 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47523 * 60.00226 * 19 18 17 35 35 H 1.09010 * 109.47195 * 300.00206 * 20 19 18 36 36 H 1.08994 * 109.47310 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46897 * 295.00642 * 23 21 15 38 38 H 1.08998 * 109.46712 * 55.00097 * 23 21 15 39 39 H 1.00901 * 111.00241 * 180.02562 * 24 23 21 40 40 H 1.00907 * 110.99755 * 303.95500 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2721 1.3540 5 6 3.4462 -1.5546 1.7248 6 1 2.7310 -2.3495 1.5737 7 6 4.6827 -1.8318 2.2952 8 7 5.6761 -0.9832 2.1547 9 14 4.9325 -3.4106 3.2617 10 1 3.6685 -4.1900 3.2720 11 1 5.3226 -3.0810 4.6561 12 1 6.0052 -4.2164 2.6248 13 6 3.2773 0.7378 2.2350 14 8 3.0875 1.8824 1.8815 15 6 3.6729 0.4448 3.6593 16 1 4.4770 -0.2911 3.6691 17 6 2.4663 -0.1082 4.4203 18 6 2.8678 -0.4050 5.8666 19 6 3.3471 0.8838 6.5376 20 6 4.5537 1.4367 5.7766 21 6 4.1526 1.7333 4.3307 22 1 3.3486 2.4691 4.3210 23 6 5.3593 2.2862 3.5697 24 7 5.7457 3.5834 4.1404 25 1 -1.0499 0.0002 0.0001 26 1 3.0089 0.9748 -0.3278 27 1 3.0098 -0.7700 -0.6796 28 1 5.5415 -0.1552 1.6677 29 1 1.6622 0.6278 4.4106 30 1 2.1246 -1.0260 3.9420 31 1 3.6720 -1.1407 5.8766 32 1 2.0081 -0.7985 6.4089 33 1 3.6335 0.6722 7.5678 34 1 2.5429 1.6195 6.5275 35 1 5.3580 0.7010 5.7867 36 1 4.8954 2.3546 6.2548 37 1 6.1929 1.5891 3.6546 38 1 5.0986 2.4145 2.5192 39 1 6.5409 3.9699 3.6543 40 1 4.9691 4.2277 4.1322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379614471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:12 Heat of formation + Delta-G solvation = -15.499526 kcal Electronic energy + Delta-G solvation = -21668.467874 eV Core-core repulsion = 18676.122225 eV Total energy + Delta-G solvation = -2992.345649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46310 -38.85834 -36.99336 -35.43007 -34.91033 -32.85308 -31.76424 -31.09746 -28.31667 -26.53478 -25.45729 -23.93728 -22.01346 -21.53404 -20.61202 -19.61387 -18.78244 -17.51290 -17.21137 -16.48687 -16.34541 -15.67041 -15.52713 -15.39132 -15.22275 -14.91468 -14.81389 -14.25938 -14.09073 -13.82513 -13.48641 -13.13203 -12.82249 -12.73083 -12.67075 -12.12677 -11.93724 -11.88047 -11.79875 -11.55041 -11.37806 -11.30126 -11.16159 -10.84861 -10.58709 -10.16626 -9.69868 -9.53370 -8.76024 -6.30529 1.56719 1.57460 1.67148 1.82362 1.84865 2.01005 2.45229 2.96983 3.05628 3.54190 3.59679 3.85486 3.97919 4.03220 4.25596 4.35845 4.47226 4.51106 4.54120 4.61133 4.66071 4.71831 4.75587 4.84310 4.98740 5.02237 5.10530 5.22246 5.32124 5.33957 5.39246 5.42191 5.55258 5.63279 5.71469 6.03586 6.15073 6.26234 6.57272 6.63084 7.08525 7.40295 7.85003 8.51421 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.013799 B = 0.010452 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.592384 B = 2678.180440 C = 3397.640737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.227 4.227 3 C 0.204 3.796 4 N -0.470 5.470 5 C -0.427 4.427 6 H 0.068 0.932 7 C -0.008 4.008 8 N -0.879 5.879 9 Si 1.107 2.893 10 H -0.264 1.264 11 H -0.264 1.264 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.627 6.627 15 C -0.103 4.103 16 H 0.115 0.885 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.097 4.097 21 C -0.053 4.053 22 H 0.049 0.951 23 C 0.077 3.923 24 N -0.836 5.836 25 H 0.257 0.743 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.259 0.741 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.004 0.996 39 H 0.344 0.656 40 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 0.359 6.267 7.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.229 4.229 3 C 0.082 3.918 4 N -0.190 5.190 5 C -0.554 4.554 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.513 5.513 9 Si 0.926 3.074 10 H -0.188 1.188 11 H -0.188 1.188 12 H -0.205 1.205 13 C 0.287 3.713 14 O -0.514 6.514 15 C -0.125 4.125 16 H 0.132 0.868 17 C -0.133 4.133 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.135 4.135 21 C -0.073 4.073 22 H 0.067 0.933 23 C -0.054 4.054 24 N -0.365 5.365 25 H 0.273 0.727 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.022 0.978 39 H 0.156 0.844 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.574 -0.379 7.552 7.988 hybrid contribution -1.357 1.414 -2.810 3.425 sum -3.931 1.034 4.743 6.246 Atomic orbital electron populations 1.25697 0.96523 1.00543 0.98424 1.24115 0.95739 1.00960 1.02054 1.18378 0.84594 1.01061 0.87771 1.43699 1.59299 1.07935 1.08109 1.20228 1.02773 0.84982 1.47407 0.91426 1.27696 0.90105 1.06417 0.96930 1.70818 1.31669 1.11101 1.37678 0.83039 0.76997 0.71088 0.76234 1.18846 1.18834 1.20479 1.21292 0.77337 0.83913 0.88720 1.90445 1.57229 1.22793 1.80954 1.21556 1.01259 0.99847 0.89840 0.86791 1.21286 0.95521 1.00103 0.96435 1.21547 1.01522 0.98224 0.93786 1.21555 0.97486 0.96682 0.99367 1.21419 0.97754 1.01089 0.93233 1.20797 0.95917 0.94912 0.95648 0.93258 1.21618 0.97082 0.91660 0.95013 1.58789 1.11482 1.05144 1.61077 0.72685 0.91290 0.88652 0.93010 0.93856 0.92220 0.92347 0.89794 0.89743 0.91955 0.93315 0.90333 0.92836 0.97792 0.84408 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.82 19.25 74.32 1.43 -5.39 16 2 C -0.23 -9.74 13.64 31.12 0.42 -9.31 16 3 C 0.20 9.50 5.86 84.57 0.50 10.00 16 4 N -0.47 -23.88 2.11 -645.43 -1.36 -25.24 16 5 C -0.43 -21.53 7.75 84.04 0.65 -20.88 16 6 H 0.07 3.45 7.90 -2.91 -0.02 3.42 16 7 C -0.01 -0.37 3.30 84.93 0.28 -0.09 16 8 N -0.88 -46.53 12.03 21.67 0.26 -46.27 16 9 Si 1.11 43.24 29.96 68.60 2.06 45.29 16 10 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 11 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 12 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 13 C 0.50 25.30 4.84 87.66 0.42 25.72 16 14 O -0.63 -34.45 14.10 -3.07 -0.04 -34.49 16 15 C -0.10 -4.63 1.16 -11.54 -0.01 -4.64 16 16 H 0.11 5.54 4.17 -2.39 -0.01 5.53 16 17 C -0.10 -3.76 5.10 30.59 0.16 -3.60 16 18 C -0.11 -3.53 5.92 30.60 0.18 -3.35 16 19 C -0.11 -3.21 5.92 30.59 0.18 -3.03 16 20 C -0.10 -3.25 5.09 30.58 0.16 -3.09 16 21 C -0.05 -2.14 1.47 -10.81 -0.02 -2.16 16 22 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 23 C 0.08 3.19 5.93 86.31 0.51 3.70 16 24 N -0.84 -27.25 9.08 -186.73 -1.69 -28.94 16 25 H 0.26 6.04 7.80 -4.42 -0.03 6.00 16 26 H 0.07 3.29 7.49 -2.39 -0.02 3.28 16 27 H 0.10 4.18 8.01 -2.39 -0.02 4.16 16 28 H 0.26 14.66 7.15 -92.70 -0.66 13.99 16 29 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.06 2.51 7.16 -2.39 -0.02 2.49 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.72 8.14 -2.38 -0.02 1.71 16 36 H 0.08 2.44 7.75 -2.39 -0.02 2.42 16 37 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.00 0.19 6.02 -2.39 -0.01 0.17 16 39 H 0.34 9.93 9.08 -89.69 -0.81 9.11 16 40 H 0.34 10.46 8.99 -89.69 -0.81 9.65 16 Total: -1.00 -61.71 320.27 3.61 -58.10 By element: Atomic # 1 Polarization: 48.15 SS G_CDS: -0.47 Total: 47.67 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.86 Total: -16.12 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -2.80 Total: -100.45 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.04 Total: -34.49 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.06 Total: 45.29 kcal Total: -61.71 3.61 -58.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379614471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.600 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds