Wall clock time and date at job start Mon Mar 30 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.53000 * 109.47355 * 120.00264 * 2 1 3 5 5 O 1.42897 * 109.47014 * 54.99541 * 4 2 1 6 6 C 1.42901 * 113.99963 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47020 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47189 * 65.00390 * 7 6 5 9 9 N 1.46503 * 109.46855 * 240.00281 * 2 1 3 10 10 C 1.38859 * 119.99878 * 85.00069 * 9 2 1 11 11 C 1.39562 * 119.84275 * 359.72867 * 10 9 2 12 12 C 1.36349 * 120.15650 * 179.72171 * 11 10 9 13 13 C 1.40886 * 119.83499 * 0.54622 * 12 11 10 14 14 C 1.41139 * 120.15447 * 179.70094 * 13 12 11 15 15 H 1.08001 * 120.00264 * 204.62750 * 14 13 12 16 16 C 1.39863 * 119.99772 * 24.62486 * 14 13 12 17 17 N 1.30902 * 120.00066 * 17.96693 * 16 14 13 18 18 Si 1.86805 * 119.99765 * 197.96622 * 16 14 13 19 19 H 1.48494 * 109.47125 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46818 * 120.00292 * 18 16 14 21 21 H 1.48503 * 109.46788 * 240.00071 * 18 16 14 22 22 C 1.40882 * 119.68962 * 359.72625 * 13 12 11 23 23 C 1.36337 * 119.84004 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47194 * 59.99309 * 1 2 3 25 25 H 1.09003 * 109.46732 * 300.00249 * 1 2 3 26 26 H 1.08998 * 109.47126 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47067 * 174.99787 * 4 2 1 28 28 H 1.09005 * 109.46920 * 294.99937 * 4 2 1 29 29 H 1.09002 * 109.46991 * 300.00578 * 6 5 4 30 30 H 1.08999 * 109.47155 * 59.99917 * 6 5 4 31 31 H 1.09000 * 109.46913 * 185.00097 * 7 6 5 32 32 H 1.09000 * 109.47518 * 304.99966 * 7 6 5 33 33 H 1.00895 * 110.99878 * 56.04558 * 8 7 6 34 34 H 1.00899 * 111.00045 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99721 * 265.00090 * 9 2 1 36 36 H 1.07997 * 119.92389 * 359.97051 * 11 10 9 37 37 H 1.07994 * 120.07735 * 180.27276 * 12 11 10 38 38 H 0.97003 * 120.00082 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.07905 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.92036 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.4702 -2.0303 1.3094 6 6 1.8836 -2.7926 2.4452 7 6 1.2162 -4.1687 2.4063 8 7 1.7027 -4.9160 1.2389 9 7 2.0183 -0.6906 -1.1962 10 6 2.1509 0.0022 -2.3923 11 6 1.8127 1.3549 -2.4526 12 6 1.9457 2.0428 -3.6223 13 6 2.4150 1.3819 -4.7746 14 6 2.5493 2.0858 -5.9905 15 1 2.5152 1.5533 -6.9295 16 6 2.7266 3.4731 -5.9794 17 7 3.1166 4.0744 -4.8840 18 14 2.4068 4.4680 -7.5278 19 1 1.9795 3.5585 -8.6211 20 1 1.3367 5.4634 -7.2644 21 1 3.6508 5.1729 -7.9289 22 6 2.7491 0.0149 -4.7077 23 6 2.6168 -0.6589 -3.5298 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1263 -0.7995 1.2055 28 1 1.7517 -0.1583 2.1370 29 1 2.9667 -2.9137 2.4268 30 1 1.5918 -2.2725 3.3576 31 1 1.4605 -4.7169 3.3162 32 1 0.1354 -4.0465 2.3349 33 1 2.7091 -4.9869 1.2488 34 1 1.2766 -5.8294 1.1910 35 1 2.2489 -1.6317 -1.1527 36 1 1.4485 1.8590 -1.5697 37 1 1.6878 3.0905 -3.6664 38 1 3.2399 5.0365 -4.8764 39 1 3.1090 -0.4981 -5.5873 40 1 2.8721 -1.7070 -3.4771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395531995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:51 Heat of formation + Delta-G solvation = -27.304454 kcal Electronic energy + Delta-G solvation = -19525.109939 eV Core-core repulsion = 16532.252390 eV Total energy + Delta-G solvation = -2992.857549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.66051 -37.66279 -35.65620 -34.36080 -33.10197 -30.66789 -29.36498 -28.17072 -27.84048 -25.99914 -24.15261 -22.17090 -21.59408 -20.62829 -19.39170 -17.13965 -16.98693 -16.48834 -16.07083 -15.76441 -14.88570 -14.65583 -14.46120 -14.02452 -13.76412 -13.13930 -13.07782 -12.65577 -12.61074 -12.31660 -11.94246 -11.80676 -11.51291 -11.45843 -11.28184 -10.98495 -10.79317 -10.70729 -10.52576 -10.38009 -9.61322 -9.58378 -9.19864 -9.11277 -8.87603 -8.44238 -7.39214 -6.56055 -6.26371 -3.94142 2.97035 3.18645 3.20683 3.25752 3.42897 3.64034 4.11736 4.31710 4.43847 4.82551 4.85443 4.95426 5.11561 5.22311 5.29528 5.33714 5.46707 5.66557 5.74993 5.89037 5.98735 6.11107 6.34046 6.39126 6.45424 6.73381 6.85944 7.02731 7.06818 7.19200 7.24896 7.29628 7.45157 7.67528 7.79390 7.95850 8.24199 8.40571 8.62004 8.83629 8.95085 9.14735 9.25510 10.45242 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.043644 B = 0.003548 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.393644 B = 7890.199305 C = 8271.790189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.165 3.835 3 H 0.081 0.919 4 C 0.054 3.946 5 O -0.362 6.362 6 C 0.062 3.938 7 C 0.064 3.936 8 N -0.841 5.841 9 N -0.750 5.750 10 C 0.100 3.900 11 C -0.169 4.169 12 C -0.123 4.123 13 C 0.071 3.929 14 C -0.467 4.467 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.810 5.810 18 Si 0.901 3.099 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.184 4.184 23 C -0.161 4.161 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.339 0.661 34 H 0.340 0.660 35 H 0.390 0.610 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.274 0.726 39 H 0.090 0.910 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 -9.993 14.588 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.058 3.942 3 H 0.099 0.901 4 C -0.023 4.023 5 O -0.281 6.281 6 C -0.015 4.015 7 C -0.066 4.066 8 N -0.371 5.371 9 N -0.385 5.385 10 C 0.002 3.998 11 C -0.191 4.191 12 C -0.143 4.143 13 C 0.068 3.932 14 C -0.498 4.498 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.438 5.438 18 Si 0.726 3.274 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.204 1.204 22 C -0.205 4.205 23 C -0.183 4.183 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.224 0.776 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.716 -9.080 14.198 17.070 hybrid contribution 0.605 -0.337 0.355 0.778 sum -2.111 -9.417 14.553 17.462 Atomic orbital electron populations 1.22193 0.96547 1.02331 1.01004 1.20623 0.93851 0.95719 0.83989 0.90126 1.22878 0.97263 0.84105 0.98078 1.88042 1.69618 1.25961 1.44487 1.22474 0.97885 0.91976 0.89180 1.21781 1.00986 0.92592 0.91288 1.58547 1.11682 1.22916 1.43932 1.43897 1.76606 1.11406 1.06617 1.17391 1.04948 0.91716 0.85727 1.20112 1.08291 0.92646 0.98013 1.20927 1.01277 0.99802 0.92307 1.17481 0.91294 0.90991 0.93403 1.19381 1.45153 0.91646 0.93658 0.91023 1.25775 0.92673 0.98440 0.97144 1.69870 1.34564 1.10850 1.28484 0.86394 0.78560 0.79795 0.82649 1.18679 1.20035 1.20370 1.20543 1.07978 0.95997 0.95957 1.19814 1.07922 0.97562 0.93031 0.92218 0.93477 0.91942 0.93154 0.93078 0.93821 0.93325 0.94561 0.90181 0.84848 0.84750 0.77645 0.89365 0.86486 0.91522 0.89174 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.20 37.16 0.34 -2.13 16 2 C 0.17 2.60 2.66 -67.93 -0.18 2.42 16 3 H 0.08 1.33 6.46 -51.93 -0.34 0.99 16 4 C 0.05 0.69 5.68 37.16 0.21 0.90 16 5 O -0.36 -4.72 9.14 -35.23 -0.32 -5.04 16 6 C 0.06 0.60 6.22 37.16 0.23 0.83 16 7 C 0.06 0.55 7.17 -3.83 -0.03 0.52 16 8 N -0.84 -7.70 9.57 -10.37 -0.10 -7.80 16 9 N -0.75 -13.95 5.20 -52.03 -0.27 -14.22 16 10 C 0.10 2.25 6.65 -83.69 -0.56 1.69 16 11 C -0.17 -4.04 8.73 -39.77 -0.35 -4.39 16 12 C -0.12 -3.31 8.64 -39.26 -0.34 -3.65 16 13 C 0.07 1.98 5.57 -106.79 -0.60 1.38 16 14 C -0.47 -13.02 9.03 -37.87 -0.34 -13.36 16 15 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 16 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 17 N -0.81 -21.94 10.96 55.54 0.61 -21.34 16 18 Si 0.90 19.68 29.60 -169.99 -5.03 14.65 16 19 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 C -0.18 -4.73 9.74 -39.27 -0.38 -5.12 16 23 C -0.16 -3.78 9.82 -39.77 -0.39 -4.18 16 24 H 0.06 1.02 7.63 -51.93 -0.40 0.63 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.99 7.56 -51.93 -0.39 0.60 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.34 2.74 8.99 -39.29 -0.35 2.39 16 34 H 0.34 2.47 9.08 -39.29 -0.36 2.11 16 35 H 0.39 7.02 8.38 -40.82 -0.34 6.68 16 36 H 0.09 1.92 6.02 -52.49 -0.32 1.61 16 37 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 38 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 39 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -29.90 329.63 -8.78 -38.68 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.17 Total: 13.30 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.47 Total: -23.20 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.24 Total: -43.35 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.32 Total: -5.04 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.90 -8.78 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395531995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.376 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds