Wall clock time and date at job start Mon Mar 30 2020 05:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.53000 * 109.47355 * 120.00264 * 2 1 3 5 5 O 1.42897 * 109.47014 * 54.99541 * 4 2 1 6 6 C 1.42901 * 113.99963 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47020 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47189 * 65.00390 * 7 6 5 9 9 N 1.46503 * 109.46855 * 240.00281 * 2 1 3 10 10 C 1.38859 * 119.99878 * 85.00069 * 9 2 1 11 11 C 1.39562 * 119.84275 * 359.72867 * 10 9 2 12 12 C 1.36349 * 120.15650 * 179.72171 * 11 10 9 13 13 C 1.40886 * 119.83499 * 0.54622 * 12 11 10 14 14 C 1.41139 * 120.15447 * 179.70094 * 13 12 11 15 15 H 1.08001 * 120.00264 * 204.62750 * 14 13 12 16 16 C 1.39863 * 119.99772 * 24.62486 * 14 13 12 17 17 N 1.30902 * 120.00066 * 17.96693 * 16 14 13 18 18 Si 1.86805 * 119.99765 * 197.96622 * 16 14 13 19 19 H 1.48494 * 109.47125 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46818 * 120.00292 * 18 16 14 21 21 H 1.48503 * 109.46788 * 240.00071 * 18 16 14 22 22 C 1.40882 * 119.68962 * 359.72625 * 13 12 11 23 23 C 1.36337 * 119.84004 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47194 * 59.99309 * 1 2 3 25 25 H 1.09003 * 109.46732 * 300.00249 * 1 2 3 26 26 H 1.08998 * 109.47126 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47067 * 174.99787 * 4 2 1 28 28 H 1.09005 * 109.46920 * 294.99937 * 4 2 1 29 29 H 1.09002 * 109.46991 * 300.00578 * 6 5 4 30 30 H 1.08999 * 109.47155 * 59.99917 * 6 5 4 31 31 H 1.09000 * 109.46913 * 185.00097 * 7 6 5 32 32 H 1.09000 * 109.47518 * 304.99966 * 7 6 5 33 33 H 1.00895 * 110.99878 * 56.04558 * 8 7 6 34 34 H 1.00899 * 111.00045 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99721 * 265.00090 * 9 2 1 36 36 H 1.07997 * 119.92389 * 359.97051 * 11 10 9 37 37 H 1.07994 * 120.07735 * 180.27276 * 12 11 10 38 38 H 0.97003 * 120.00082 * 179.97438 * 17 16 14 39 39 H 1.08005 * 120.07905 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.92036 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.4702 -2.0303 1.3094 6 6 1.8836 -2.7926 2.4452 7 6 1.2162 -4.1687 2.4063 8 7 1.7027 -4.9160 1.2389 9 7 2.0183 -0.6906 -1.1962 10 6 2.1509 0.0022 -2.3923 11 6 1.8127 1.3549 -2.4526 12 6 1.9457 2.0428 -3.6223 13 6 2.4150 1.3819 -4.7746 14 6 2.5493 2.0858 -5.9905 15 1 2.5152 1.5533 -6.9295 16 6 2.7266 3.4731 -5.9794 17 7 3.1166 4.0744 -4.8840 18 14 2.4068 4.4680 -7.5278 19 1 1.9795 3.5585 -8.6211 20 1 1.3367 5.4634 -7.2644 21 1 3.6508 5.1729 -7.9289 22 6 2.7491 0.0149 -4.7077 23 6 2.6168 -0.6589 -3.5298 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1263 -0.7995 1.2055 28 1 1.7517 -0.1583 2.1370 29 1 2.9667 -2.9137 2.4268 30 1 1.5918 -2.2725 3.3576 31 1 1.4605 -4.7169 3.3162 32 1 0.1354 -4.0465 2.3349 33 1 2.7091 -4.9869 1.2488 34 1 1.2766 -5.8294 1.1910 35 1 2.2489 -1.6317 -1.1527 36 1 1.4485 1.8590 -1.5697 37 1 1.6878 3.0905 -3.6664 38 1 3.2399 5.0365 -4.8764 39 1 3.1090 -0.4981 -5.5873 40 1 2.8721 -1.7070 -3.4771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395531995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:50 Heat of formation + Delta-G solvation = -47.715180 kcal Electronic energy + Delta-G solvation = -19525.995015 eV Core-core repulsion = 16532.252390 eV Total energy + Delta-G solvation = -2993.742625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05228 -39.05592 -37.05026 -35.46818 -34.73773 -32.25953 -31.30463 -29.71573 -28.90221 -27.11570 -25.99459 -23.32657 -22.85234 -22.43584 -20.96258 -19.12637 -18.14285 -17.58041 -17.22062 -16.85135 -16.70797 -15.92480 -15.56069 -15.27074 -15.12392 -14.64051 -14.37090 -14.18219 -13.97801 -13.73217 -13.48875 -13.41693 -13.15465 -12.81337 -12.72295 -12.43614 -12.35076 -12.21984 -11.85256 -11.76421 -11.53332 -11.12616 -11.00930 -10.46417 -10.27190 -9.51210 -9.36462 -8.52061 -8.10206 -5.96800 1.13361 1.21799 1.41190 1.55679 1.60447 2.29488 2.74294 2.87438 2.99541 3.71925 3.88398 3.94485 4.18171 4.25548 4.30173 4.39310 4.50503 4.54498 4.56386 4.63171 4.68091 4.75406 4.91900 5.01610 5.05753 5.10606 5.21114 5.32071 5.47859 5.49832 5.74406 5.84890 6.00813 6.21297 6.22421 6.41956 6.45149 6.63004 6.72626 6.93510 7.11761 7.20315 7.38336 8.51430 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.043644 B = 0.003548 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.393644 B = 7890.199305 C = 8271.790189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.075 0.925 4 C 0.063 3.937 5 O -0.384 6.384 6 C 0.057 3.943 7 C 0.065 3.935 8 N -0.860 5.860 9 N -0.741 5.741 10 C 0.118 3.882 11 C -0.175 4.175 12 C -0.142 4.142 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.066 0.934 16 C 0.031 3.969 17 N -0.842 5.842 18 Si 0.976 3.024 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.194 4.194 23 C -0.170 4.170 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.344 0.656 34 H 0.348 0.652 35 H 0.396 0.604 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.282 0.718 39 H 0.095 0.905 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 -10.638 16.191 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 H 0.093 0.907 4 C -0.014 4.014 5 O -0.303 6.303 6 C -0.020 4.020 7 C -0.066 4.066 8 N -0.391 5.391 9 N -0.375 5.375 10 C 0.019 3.981 11 C -0.197 4.197 12 C -0.162 4.162 13 C 0.030 3.970 14 C -0.538 4.538 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.470 5.470 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.193 1.193 22 C -0.215 4.215 23 C -0.192 4.192 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.230 0.770 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.882 -9.761 15.850 18.836 hybrid contribution 0.646 -0.291 0.040 0.709 sum -2.236 -10.052 15.890 18.935 Atomic orbital electron populations 1.22081 0.96004 1.01909 1.01150 1.20851 0.94182 0.95748 0.84129 0.90699 1.22719 0.97109 0.84451 0.97144 1.88007 1.69996 1.26093 1.46248 1.22699 0.98391 0.92186 0.88758 1.21802 1.00270 0.92340 0.92165 1.58561 1.12248 1.23710 1.44629 1.43980 1.75698 1.11608 1.06200 1.17490 1.02353 0.91338 0.86961 1.20256 1.08311 0.93365 0.97782 1.20870 1.02602 0.99305 0.93397 1.17801 0.92938 0.92210 0.94035 1.19593 1.47529 0.93034 0.93600 0.91626 1.26596 0.91796 0.98963 1.00657 1.69926 1.35094 1.11498 1.30530 0.85258 0.78753 0.77984 0.78223 1.18563 1.19117 1.19328 1.20734 1.07980 0.95597 0.97141 1.20084 1.07753 0.98822 0.92573 0.94633 0.90776 0.92552 0.93049 0.90433 0.93260 0.91529 0.92077 0.91155 0.84333 0.83833 0.76980 0.87457 0.88268 0.90819 0.88722 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.20 71.98 0.66 -3.70 16 2 C 0.16 4.59 2.66 44.99 0.12 4.71 16 3 H 0.08 2.31 6.46 -2.39 -0.02 2.30 16 4 C 0.06 1.41 5.68 71.98 0.41 1.82 16 5 O -0.38 -8.94 9.14 -148.98 -1.36 -10.31 16 6 C 0.06 0.92 6.22 71.98 0.45 1.37 16 7 C 0.06 0.95 7.17 86.30 0.62 1.57 16 8 N -0.86 -14.12 9.57 -186.73 -1.79 -15.91 16 9 N -0.74 -26.22 5.20 -318.53 -1.66 -27.88 16 10 C 0.12 5.26 6.65 38.67 0.26 5.51 16 11 C -0.18 -8.42 8.73 22.15 0.19 -8.23 16 12 C -0.14 -7.85 8.64 22.48 0.19 -7.65 16 13 C 0.03 1.90 5.57 -21.27 -0.12 1.78 16 14 C -0.51 -29.26 9.03 23.38 0.21 -29.05 16 15 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 16 C 0.03 1.69 5.13 85.22 0.44 2.13 16 17 N -0.84 -46.79 10.96 21.82 0.24 -46.55 16 18 Si 0.98 41.05 29.60 68.60 2.03 43.08 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 C -0.19 -10.15 9.74 22.47 0.22 -9.93 16 23 C -0.17 -7.89 9.82 22.15 0.22 -7.67 16 24 H 0.03 1.17 7.63 -2.39 -0.02 1.15 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.68 7.56 -2.39 -0.02 1.66 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.34 4.91 8.99 -89.70 -0.81 4.11 16 34 H 0.35 4.49 9.08 -89.69 -0.81 3.68 16 35 H 0.40 13.38 8.38 -92.71 -0.78 12.60 16 36 H 0.11 4.64 6.02 -2.91 -0.02 4.62 16 37 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 38 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 39 H 0.09 4.70 8.06 -2.91 -0.02 4.68 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -65.53 329.63 -0.01 -65.54 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -1.34 Total: 39.37 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 3.87 Total: -47.34 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -3.20 Total: -90.34 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.36 Total: -10.31 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -65.53 -0.01 -65.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395531995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.821 kcal (2) G-P(sol) polarization free energy of solvation -65.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds