Wall clock time and date at job start Mon Mar 30 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38063 * 119.57145 * 2 1 4 4 C 1.38840 * 119.32717 * 179.77610 * 3 2 1 5 5 C 1.38347 * 118.50207 * 0.49536 * 4 3 2 6 6 C 1.50705 * 120.44940 * 179.77508 * 5 4 3 7 7 N 1.46901 * 109.46961 * 259.97773 * 6 5 4 8 8 C 1.46899 * 110.99952 * 66.04699 * 7 6 5 9 9 C 1.46899 * 110.99763 * 189.99865 * 7 6 5 10 10 H 1.08997 * 109.47287 * 299.99745 * 9 7 6 11 11 C 1.53006 * 109.46931 * 59.99933 * 9 7 6 12 12 C 1.50702 * 109.46997 * 179.97438 * 9 7 6 13 13 H 1.08004 * 119.99983 * 0.02562 * 12 9 7 14 14 C 1.37870 * 119.99949 * 179.97438 * 12 9 7 15 15 N 1.31519 * 120.00253 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00023 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47228 * 60.00188 * 16 14 12 18 18 H 1.48501 * 109.47475 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47141 * 300.00237 * 16 14 12 20 20 C 1.39094 * 119.09816 * 359.74984 * 5 4 3 21 21 N 1.39016 * 119.70143 * 180.02562 * 20 5 4 22 22 N 1.36594 * 119.99547 * 179.97438 * 21 20 5 23 23 N 1.31940 * 119.56967 * 180.27761 * 2 1 3 24 24 H 1.09001 * 109.46953 * 269.72110 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71708 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72338 * 1 2 3 27 27 H 1.08004 * 120.33829 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.75022 * 180.24968 * 4 3 2 29 29 H 1.08998 * 109.46957 * 19.97606 * 6 5 4 30 30 H 1.08998 * 109.46865 * 139.97239 * 6 5 4 31 31 H 1.08989 * 109.47271 * 59.99783 * 8 7 6 32 32 H 1.08998 * 109.46486 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.46902 * 299.99573 * 8 7 6 34 34 H 1.09000 * 109.47064 * 299.99459 * 11 9 7 35 35 H 1.09001 * 109.46901 * 60.00127 * 11 9 7 36 36 H 1.09000 * 109.46617 * 179.97438 * 11 9 7 37 37 H 0.97002 * 120.00270 * 179.97438 * 15 14 12 38 38 H 0.97000 * 119.99775 * 359.97438 * 21 20 5 39 39 H 1.00897 * 110.99884 * 180.02562 * 22 21 20 40 40 H 1.00901 * 111.00227 * 303.94848 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1949 0.0047 5 6 4.2318 -0.0237 -0.0012 6 6 5.7378 -0.0813 -0.0015 7 7 6.2178 -0.3342 -1.3667 8 6 5.9112 0.7981 -2.2508 9 6 7.6563 -0.6319 -1.3721 10 1 8.2043 0.2156 -0.9604 11 6 7.9232 -1.8744 -0.5200 12 6 8.1113 -0.8859 -2.7862 13 1 7.4028 -0.8311 -3.5995 14 6 9.4323 -1.1870 -3.0417 15 7 10.2952 -1.2532 -2.0513 16 14 9.9965 -1.5011 -4.7945 17 1 9.7370 -0.2954 -5.6216 18 1 11.4506 -1.8021 -4.8001 19 1 9.2503 -2.6560 -5.3553 20 6 3.4815 -1.1949 -0.0063 21 7 4.1268 -2.4262 -0.0118 22 7 3.3959 -3.5802 -0.0163 23 7 2.1582 -1.1475 -0.0056 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6469 2.1353 0.0004 28 1 4.1329 2.1207 0.0089 29 1 6.1377 0.8682 0.3542 30 1 6.0707 -0.8847 0.6555 31 1 6.3959 1.6973 -1.8709 32 1 6.2770 0.5843 -3.2550 33 1 4.8327 0.9526 -2.2826 34 1 7.5940 -1.6911 0.5028 35 1 7.3752 -2.7219 -0.9318 36 1 8.9905 -2.0955 -0.5245 37 1 11.2245 -1.4654 -2.2310 38 1 5.0960 -2.4659 -0.0124 39 1 3.9982 -4.3896 -0.0196 40 1 2.7584 -3.6075 0.7652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688556883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:15 Heat of formation + Delta-G solvation = 71.288734 kcal Electronic energy + Delta-G solvation = -20505.923011 eV Core-core repulsion = 17549.633535 eV Total energy + Delta-G solvation = -2956.289476 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19676 -37.10026 -36.48252 -33.56632 -32.18053 -31.61084 -29.28023 -28.94324 -27.42930 -25.66513 -24.45636 -23.07735 -22.17888 -21.14574 -19.43498 -17.70660 -17.21388 -16.37413 -15.54283 -15.25879 -14.86153 -14.77334 -14.23160 -14.01637 -13.79479 -13.48636 -12.93551 -12.62147 -12.52837 -12.51188 -12.09090 -11.80175 -11.57769 -11.22113 -11.10588 -10.99400 -10.74713 -10.58724 -10.22991 -10.09712 -9.87340 -9.38666 -9.12803 -8.95393 -8.72888 -8.44970 -7.23278 -6.94191 -6.04973 -4.09405 1.54685 1.79722 3.25164 3.30646 3.34768 3.38430 4.13203 4.39648 4.50150 4.97915 5.07211 5.25620 5.27306 5.34336 5.46089 5.55920 5.65114 5.73185 5.81224 5.96706 6.10456 6.21835 6.25590 6.39290 6.47129 6.62135 6.67978 6.70820 6.79730 6.89460 7.05750 7.06935 7.43460 7.63947 7.77276 7.81106 8.12558 8.13397 8.27043 8.54618 8.73392 8.97102 9.55971 11.01650 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.005048 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.966258 B = 5545.701537 C = 5857.212247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.162 3.838 3 C -0.240 4.240 4 C -0.031 4.031 5 C -0.184 4.184 6 C 0.095 3.905 7 N -0.531 5.531 8 C 0.040 3.960 9 C 0.211 3.789 10 H -0.001 1.001 11 C -0.136 4.136 12 C -0.503 4.503 13 H 0.063 0.937 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.433 3.567 21 N -0.564 5.564 22 N -0.597 5.597 23 N -0.534 5.534 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.010 0.990 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.006 0.994 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.261 0.739 38 H 0.420 0.580 39 H 0.351 0.649 40 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.632 1.799 6.794 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.023 3.977 3 C -0.263 4.263 4 C -0.057 4.057 5 C -0.193 4.193 6 C -0.034 4.034 7 N -0.256 5.256 8 C -0.109 4.109 9 C 0.105 3.895 10 H 0.017 0.983 11 C -0.194 4.194 12 C -0.541 4.541 13 H 0.081 0.919 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.195 3.805 21 N -0.291 5.291 22 N -0.222 5.222 23 N -0.253 5.253 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.263 0.737 39 H 0.164 0.836 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.466 0.631 5.940 15.651 hybrid contribution 2.198 0.971 0.291 2.420 sum -12.268 1.602 6.231 13.852 Atomic orbital electron populations 1.20651 0.89524 1.03029 1.02448 1.20808 0.96072 0.87698 0.93097 1.21485 0.94541 0.98576 1.11731 1.21147 0.93983 0.96885 0.93731 1.20083 0.96760 0.92065 1.10342 1.20880 0.89124 1.00017 0.93362 1.62197 1.19902 1.38093 1.05376 1.22189 0.98571 0.91158 0.98979 1.19261 0.80576 0.93297 0.96348 0.98332 1.21910 1.04069 0.98850 0.94543 1.21105 0.93627 1.47240 0.92133 0.91857 1.24918 0.96650 0.95403 0.97187 1.69872 1.03425 1.49336 1.30746 0.86579 0.77373 0.78814 0.84763 1.20325 1.21379 1.20217 1.17753 0.87919 0.84275 0.90576 1.43236 1.06691 0.98809 1.80412 1.59817 1.17696 0.95189 1.49450 1.66969 1.07309 1.29569 1.21410 0.90963 0.91059 0.90774 0.85839 0.85537 0.94885 0.90803 0.97185 0.90528 0.93715 0.97506 0.94818 0.89344 0.92929 0.73690 0.83574 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.17 36.01 0.37 -0.66 16 2 C 0.16 2.32 6.78 -82.61 -0.56 1.76 16 3 C -0.24 -3.24 9.73 -39.42 -0.38 -3.62 16 4 C -0.03 -0.46 8.90 -39.32 -0.35 -0.81 16 5 C -0.18 -3.08 4.60 -104.26 -0.48 -3.56 16 6 C 0.09 1.71 4.22 -4.97 -0.02 1.69 16 7 N -0.53 -11.15 4.61 -237.73 -1.10 -12.25 16 8 C 0.04 0.80 9.00 60.06 0.54 1.34 16 9 C 0.21 5.14 2.06 -68.86 -0.14 5.00 16 10 H 0.00 -0.02 8.14 -51.93 -0.42 -0.45 16 11 C -0.14 -3.11 8.76 37.16 0.33 -2.79 16 12 C -0.50 -13.48 7.88 -34.44 -0.27 -13.75 16 13 H 0.06 1.72 6.41 -52.48 -0.34 1.38 16 14 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 16 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.43 7.44 7.54 -155.00 -1.17 6.27 16 21 N -0.56 -9.08 6.54 31.13 0.20 -8.87 16 22 N -0.60 -8.18 10.05 60.35 0.61 -7.58 16 23 N -0.53 -8.87 9.71 -8.67 -0.08 -8.95 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 28 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.03 0.59 8.01 -51.93 -0.42 0.17 16 30 H 0.07 1.30 4.79 -51.93 -0.25 1.06 16 31 H 0.01 0.19 8.14 -51.94 -0.42 -0.23 16 32 H 0.08 1.66 6.10 -51.93 -0.32 1.34 16 33 H 0.04 0.83 6.66 -51.93 -0.35 0.48 16 34 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.42 6.95 7.04 -185.16 -1.30 5.64 16 39 H 0.35 3.88 9.21 -181.37 -1.67 2.21 16 40 H 0.33 4.14 9.02 -181.37 -1.64 2.51 16 LS Contribution 320.76 15.07 4.83 4.83 Total: -1.00 -29.86 320.76 -11.59 -41.45 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -9.42 Total: 7.16 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.24 Total: -7.62 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.26 Total: -61.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.86 -11.59 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688556883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.737 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds