Wall clock time and date at job start Mon Mar 30 2020 05:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38063 * 119.57145 * 2 1 4 4 C 1.38840 * 119.32717 * 179.77610 * 3 2 1 5 5 C 1.38347 * 118.50207 * 0.49536 * 4 3 2 6 6 C 1.50705 * 120.44940 * 179.77508 * 5 4 3 7 7 N 1.46901 * 109.46961 * 259.97773 * 6 5 4 8 8 C 1.46899 * 110.99952 * 66.04699 * 7 6 5 9 9 C 1.46899 * 110.99763 * 189.99865 * 7 6 5 10 10 H 1.08997 * 109.47287 * 299.99745 * 9 7 6 11 11 C 1.53006 * 109.46931 * 59.99933 * 9 7 6 12 12 C 1.50702 * 109.46997 * 179.97438 * 9 7 6 13 13 H 1.08004 * 119.99983 * 0.02562 * 12 9 7 14 14 C 1.37870 * 119.99949 * 179.97438 * 12 9 7 15 15 N 1.31519 * 120.00253 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00023 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47228 * 60.00188 * 16 14 12 18 18 H 1.48501 * 109.47475 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47141 * 300.00237 * 16 14 12 20 20 C 1.39094 * 119.09816 * 359.74984 * 5 4 3 21 21 N 1.39016 * 119.70143 * 180.02562 * 20 5 4 22 22 N 1.36594 * 119.99547 * 179.97438 * 21 20 5 23 23 N 1.31940 * 119.56967 * 180.27761 * 2 1 3 24 24 H 1.09001 * 109.46953 * 269.72110 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71708 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72338 * 1 2 3 27 27 H 1.08004 * 120.33829 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.75022 * 180.24968 * 4 3 2 29 29 H 1.08998 * 109.46957 * 19.97606 * 6 5 4 30 30 H 1.08998 * 109.46865 * 139.97239 * 6 5 4 31 31 H 1.08989 * 109.47271 * 59.99783 * 8 7 6 32 32 H 1.08998 * 109.46486 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.46902 * 299.99573 * 8 7 6 34 34 H 1.09000 * 109.47064 * 299.99459 * 11 9 7 35 35 H 1.09001 * 109.46901 * 60.00127 * 11 9 7 36 36 H 1.09000 * 109.46617 * 179.97438 * 11 9 7 37 37 H 0.97002 * 120.00270 * 179.97438 * 15 14 12 38 38 H 0.97000 * 119.99775 * 359.97438 * 21 20 5 39 39 H 1.00897 * 110.99884 * 180.02562 * 22 21 20 40 40 H 1.00901 * 111.00227 * 303.94848 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1949 0.0047 5 6 4.2318 -0.0237 -0.0012 6 6 5.7378 -0.0813 -0.0015 7 7 6.2178 -0.3342 -1.3667 8 6 5.9112 0.7981 -2.2508 9 6 7.6563 -0.6319 -1.3721 10 1 8.2043 0.2156 -0.9604 11 6 7.9232 -1.8744 -0.5200 12 6 8.1113 -0.8859 -2.7862 13 1 7.4028 -0.8311 -3.5995 14 6 9.4323 -1.1870 -3.0417 15 7 10.2952 -1.2532 -2.0513 16 14 9.9965 -1.5011 -4.7945 17 1 9.7370 -0.2954 -5.6216 18 1 11.4506 -1.8021 -4.8001 19 1 9.2503 -2.6560 -5.3553 20 6 3.4815 -1.1949 -0.0063 21 7 4.1268 -2.4262 -0.0118 22 7 3.3959 -3.5802 -0.0163 23 7 2.1582 -1.1475 -0.0056 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6469 2.1353 0.0004 28 1 4.1329 2.1207 0.0089 29 1 6.1377 0.8682 0.3542 30 1 6.0707 -0.8847 0.6555 31 1 6.3959 1.6973 -1.8709 32 1 6.2770 0.5843 -3.2550 33 1 4.8327 0.9526 -2.2826 34 1 7.5940 -1.6911 0.5028 35 1 7.3752 -2.7219 -0.9318 36 1 8.9905 -2.0955 -0.5245 37 1 11.2245 -1.4654 -2.2310 38 1 5.0960 -2.4659 -0.0124 39 1 3.9982 -4.3896 -0.0196 40 1 2.7584 -3.6075 0.7652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688556883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:14 Heat of formation + Delta-G solvation = 51.326603 kcal Electronic energy + Delta-G solvation = -20506.788634 eV Core-core repulsion = 17549.633535 eV Total energy + Delta-G solvation = -2957.155099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37394 -38.71903 -37.63939 -35.22854 -33.72690 -32.72445 -31.05833 -30.12851 -28.76483 -27.28248 -26.11001 -24.57916 -23.33269 -22.45763 -21.18535 -18.86515 -18.41287 -18.31835 -17.16767 -16.47227 -16.22211 -16.10619 -15.74918 -15.51636 -15.10897 -14.90579 -14.28825 -14.25389 -13.73016 -13.62971 -13.45129 -13.01913 -12.96077 -12.90491 -12.81133 -12.63879 -12.35485 -12.15518 -12.08346 -11.96495 -11.60318 -10.94108 -10.57901 -10.47929 -10.24092 -9.89032 -8.93406 -8.15730 -8.06708 -6.22493 0.39271 0.66027 1.42208 1.43270 1.50770 2.10492 2.41961 2.96445 3.17260 3.45784 3.50846 3.92842 4.07230 4.15721 4.29288 4.47159 4.55189 4.67923 4.70721 4.74819 4.81867 4.91310 4.93954 4.96153 4.98396 5.06713 5.24075 5.28428 5.37461 5.46968 5.50948 5.62867 5.72194 5.78399 6.00553 6.25619 6.37983 6.67188 6.72477 6.91516 7.01475 7.46580 7.57464 8.93763 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.005048 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.966258 B = 5545.701537 C = 5857.212247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.152 3.848 3 C -0.236 4.236 4 C -0.032 4.032 5 C -0.206 4.206 6 C 0.103 3.897 7 N -0.534 5.534 8 C 0.046 3.954 9 C 0.216 3.784 10 H -0.035 1.035 11 C -0.122 4.122 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.955 3.045 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.414 3.586 21 N -0.570 5.570 22 N -0.602 5.602 23 N -0.552 5.552 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.157 0.843 28 H 0.142 0.858 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.012 0.988 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.061 0.939 37 H 0.261 0.739 38 H 0.415 0.585 39 H 0.363 0.637 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.452 2.439 6.732 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.014 3.986 3 C -0.258 4.258 4 C -0.059 4.059 5 C -0.214 4.214 6 C -0.025 4.025 7 N -0.259 5.259 8 C -0.102 4.102 9 C 0.110 3.890 10 H -0.018 1.018 11 C -0.180 4.180 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.183 4.183 15 N -0.558 5.558 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.200 1.200 20 C 0.177 3.823 21 N -0.297 5.297 22 N -0.229 5.229 23 N -0.272 5.272 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.160 0.840 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.256 0.744 39 H 0.178 0.822 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.304 1.267 5.885 17.380 hybrid contribution 2.644 0.811 0.354 2.788 sum -13.660 2.078 6.239 15.160 Atomic orbital electron populations 1.20746 0.86773 1.03955 1.03794 1.21553 0.97965 0.87446 0.91669 1.21843 0.94062 0.99740 1.10184 1.21424 0.94909 0.96730 0.92793 1.19973 0.95584 0.93012 1.12849 1.20795 0.90419 0.99909 0.91391 1.62130 1.17446 1.38825 1.07452 1.22102 0.99479 0.90902 0.97723 1.19056 0.82273 0.92506 0.95202 1.01776 1.21692 1.02236 0.98172 0.95916 1.21363 0.93823 1.47213 0.93181 0.92660 1.25621 0.96795 0.95282 1.00646 1.69994 1.03559 1.49889 1.32350 0.85657 0.76969 0.78664 0.80593 1.19883 1.20923 1.19987 1.17979 0.88468 0.84620 0.91225 1.43262 1.06527 0.99374 1.80499 1.59783 1.18032 0.95067 1.50003 1.67046 1.07028 1.30920 1.22187 0.89254 0.88626 0.91368 0.82536 0.84018 0.94806 0.90893 0.96993 0.92529 0.91981 0.94947 0.94760 0.92005 0.92955 0.74360 0.82165 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 10.17 71.24 0.72 -0.95 16 2 C 0.15 3.96 6.78 42.50 0.29 4.25 16 3 C -0.24 -5.60 9.73 22.37 0.22 -5.39 16 4 C -0.03 -0.88 8.90 22.44 0.20 -0.68 16 5 C -0.21 -6.66 4.60 -19.63 -0.09 -6.75 16 6 C 0.10 3.67 4.22 85.56 0.36 4.03 16 7 N -0.53 -22.49 4.61 -906.05 -4.18 -26.67 16 8 C 0.05 1.86 9.00 127.69 1.15 3.01 16 9 C 0.22 10.74 2.06 44.17 0.09 10.83 16 10 H -0.04 -1.96 8.14 -2.39 -0.02 -1.98 16 11 C -0.12 -5.67 8.76 71.98 0.63 -5.04 16 12 C -0.52 -28.17 7.88 25.60 0.20 -27.97 16 13 H 0.06 3.04 6.41 -2.91 -0.02 3.02 16 14 C 0.02 0.84 5.30 84.65 0.45 1.29 16 15 N -0.92 -51.96 11.32 21.45 0.24 -51.72 16 16 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 C 0.41 13.88 7.54 133.04 1.00 14.88 16 21 N -0.57 -18.12 6.54 -55.44 -0.36 -18.48 16 22 N -0.60 -16.13 10.05 37.02 0.37 -15.75 16 23 N -0.55 -17.52 9.71 -181.33 -1.76 -19.28 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.03 1.19 8.01 -2.39 -0.02 1.17 16 30 H 0.07 2.56 4.79 -2.39 -0.01 2.55 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 2.47 6.10 -2.39 -0.01 2.45 16 33 H 0.06 2.24 6.66 -2.39 -0.02 2.23 16 34 H 0.03 1.29 6.20 -2.39 -0.01 1.28 16 35 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 37 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.41 13.67 7.04 -215.50 -1.52 12.15 16 39 H 0.36 7.82 9.21 -210.56 -1.94 5.88 16 40 H 0.34 8.23 9.02 -210.56 -1.90 6.33 16 Total: -1.00 -63.88 320.76 -2.72 -66.59 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -4.28 Total: 28.14 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.23 Total: -8.48 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -5.69 Total: -131.91 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -63.88 -2.72 -66.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688556883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.921 kcal (2) G-P(sol) polarization free energy of solvation -63.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds