Wall clock time and date at job start Mon Mar 30 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48571 * 111.00129 * 2 1 4 4 C 1.54365 * 104.53792 * 200.90352 * 3 2 1 5 5 H 1.08998 * 110.91788 * 263.55428 * 4 3 2 6 6 C 1.54137 * 105.63925 * 23.79734 * 4 3 2 7 7 H 1.08997 * 110.84680 * 240.19381 * 6 4 3 8 8 C 1.48556 * 111.00059 * 244.57109 * 2 1 3 9 9 C 1.53026 * 109.72583 * 116.94694 * 6 4 3 10 10 H 1.09003 * 109.63669 * 179.79898 * 9 6 4 11 11 C 1.53037 * 109.19733 * 299.93046 * 9 6 4 12 12 C 1.55489 * 109.51240 * 59.53497 * 11 9 6 13 13 C 1.53235 * 108.97751 * 141.26055 * 4 3 2 14 14 H 1.08997 * 110.49692 * 67.79494 * 13 4 3 15 15 N 1.47690 * 108.05022 * 188.79889 * 13 4 3 16 16 C 1.34774 * 122.07782 * 238.63900 * 15 13 4 17 17 O 1.21691 * 119.99707 * 359.97438 * 16 15 13 18 18 C 1.46374 * 119.99951 * 179.97438 * 16 15 13 19 19 H 1.07991 * 120.00335 * 0.02562 * 18 16 15 20 20 C 1.40055 * 119.99881 * 180.02562 * 18 16 15 21 21 N 1.30678 * 119.99845 * 359.97438 * 20 18 16 22 22 Si 1.86794 * 120.00205 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47341 * 180.02562 * 22 20 18 24 24 H 1.48510 * 109.46748 * 300.00101 * 22 20 18 25 25 H 1.48498 * 109.47206 * 59.99778 * 22 20 18 26 26 C 1.47641 * 115.84898 * 58.90143 * 15 13 4 27 27 H 1.08993 * 109.47192 * 60.12775 * 1 2 3 28 28 H 1.08994 * 109.47229 * 180.12926 * 1 2 3 29 29 H 1.09002 * 109.46816 * 300.12667 * 1 2 3 30 30 H 1.08998 * 110.42696 * 82.14097 * 3 2 1 31 31 H 1.09002 * 110.52406 * 319.71469 * 3 2 1 32 32 H 1.08995 * 110.40894 * 277.70539 * 8 2 1 33 33 H 1.09001 * 110.40358 * 40.14245 * 8 2 1 34 34 H 1.09002 * 109.38229 * 179.39144 * 11 9 6 35 35 H 1.09002 * 109.38409 * 299.07049 * 11 9 6 36 36 H 1.09001 * 109.96310 * 240.83437 * 12 11 9 37 37 H 1.09004 * 109.46194 * 120.58239 * 12 11 9 38 38 H 0.97001 * 119.99601 * 179.97438 * 21 20 18 39 39 H 1.09001 * 109.99282 * 119.41420 * 26 15 13 40 40 H 1.08993 * 110.00099 * 240.79314 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3870 0.0000 4 6 3.4435 1.2485 -0.5331 5 1 4.1586 1.1971 0.2878 6 6 3.4583 -0.0536 -1.3578 7 1 4.1756 -0.7644 -0.9475 8 6 2.0014 -0.5955 -1.2525 9 6 3.7697 0.2656 -2.8216 10 1 3.7834 -0.6565 -3.4027 11 6 2.6936 1.2043 -3.3719 12 6 2.6709 2.5150 -2.5358 13 6 3.7516 2.4361 -1.4511 14 1 3.7952 3.3614 -0.8766 15 7 5.0455 2.1779 -2.1148 16 6 6.0932 3.0167 -1.9914 17 8 5.9898 4.0242 -1.3167 18 6 7.3553 2.7159 -2.6689 19 1 7.4470 1.8221 -3.2679 20 6 8.4442 3.5873 -2.5402 21 7 8.3332 4.6691 -1.8157 22 14 10.0547 3.2038 -3.4053 23 1 11.0416 4.2737 -3.1112 24 1 10.5785 1.9011 -2.9215 25 1 9.8244 3.1313 -4.8706 26 6 5.1182 0.9469 -2.9267 27 1 -0.3633 0.5118 -0.8911 28 1 -0.3633 -1.0276 0.0023 29 1 -0.3633 0.5158 0.8889 30 1 2.0074 1.7922 1.0118 31 1 1.4114 2.0229 -0.6601 32 1 2.0097 -1.6832 -1.1826 33 1 1.4085 -0.2732 -2.1085 34 1 2.9185 1.4423 -4.4116 35 1 1.7223 0.7128 -3.3169 36 1 1.6948 2.6407 -2.0672 37 1 2.8723 3.3652 -3.1877 38 1 9.0874 5.2724 -1.7263 39 1 5.3381 1.1974 -3.9644 40 1 5.8878 0.2843 -2.5310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708013903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:22 Heat of formation + Delta-G solvation = -45.178636 kcal Electronic energy + Delta-G solvation = -21451.387962 eV Core-core repulsion = 18457.755331 eV Total energy + Delta-G solvation = -2993.632632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.28315 -39.05227 -37.33035 -34.70600 -33.50412 -33.24785 -31.87056 -28.77339 -28.59184 -26.88487 -25.17148 -23.42511 -22.53552 -22.02061 -21.42818 -18.92430 -17.98436 -17.57679 -17.25553 -16.96876 -16.24746 -15.94984 -15.34135 -15.16648 -15.06371 -14.44847 -14.15888 -13.97144 -13.79939 -13.62285 -13.31559 -13.07270 -12.92587 -12.75126 -12.62223 -12.44352 -12.31838 -12.21642 -12.16579 -12.00770 -11.90580 -11.17553 -11.02552 -10.93421 -10.91629 -9.79691 -9.35617 -8.97887 -8.29134 -6.85141 1.37459 1.41356 1.52884 2.22270 2.44968 2.76062 3.12494 3.48970 3.56952 3.65267 3.84085 4.04646 4.07865 4.10637 4.16732 4.30296 4.39175 4.49396 4.57691 4.59465 4.62737 4.73480 4.77554 4.83951 4.89558 4.96117 5.03988 5.06127 5.11254 5.14828 5.28298 5.30875 5.33100 5.38570 5.39745 5.79625 5.87217 6.09544 6.14885 6.46411 6.86303 7.46426 8.47635 8.67531 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037826 B = 0.005607 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.062780 B = 4992.722428 C = 5239.110998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.529 5.529 3 C 0.041 3.959 4 C -0.092 4.092 5 H 0.045 0.955 6 C -0.073 4.073 7 H 0.076 0.924 8 C 0.040 3.960 9 C -0.086 4.086 10 H 0.116 0.884 11 C -0.105 4.105 12 C -0.124 4.124 13 C 0.146 3.854 14 H 0.047 0.953 15 N -0.641 5.641 16 C 0.542 3.458 17 O -0.637 6.637 18 C -0.567 4.567 19 H 0.087 0.913 20 C 0.028 3.972 21 N -0.823 5.823 22 Si 0.996 3.004 23 H -0.274 1.274 24 H -0.254 1.254 25 H -0.253 1.253 26 C 0.134 3.866 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.273 0.727 39 H 0.055 0.945 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 -12.826 -3.286 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.253 5.253 3 C -0.087 4.087 4 C -0.112 4.112 5 H 0.063 0.937 6 C -0.092 4.092 7 H 0.094 0.906 8 C -0.087 4.087 9 C -0.105 4.105 10 H 0.134 0.866 11 C -0.142 4.142 12 C -0.163 4.163 13 C 0.041 3.959 14 H 0.066 0.934 15 N -0.378 5.378 16 C 0.348 3.652 17 O -0.525 6.525 18 C -0.603 4.603 19 H 0.105 0.895 20 C -0.187 4.187 21 N -0.453 5.453 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.178 1.178 25 H -0.177 1.177 26 C 0.011 3.989 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.558 -12.427 -2.373 18.544 hybrid contribution 0.860 1.074 -0.541 1.478 sum -12.698 -11.354 -2.913 17.281 Atomic orbital electron populations 1.22560 0.86601 1.03039 1.01309 1.65326 1.09445 1.14606 1.35896 1.23236 0.93577 0.91101 1.00823 1.22134 0.96752 0.95511 0.96838 0.93653 1.22037 0.97690 0.95160 0.94300 0.90563 1.23613 0.93315 1.00423 0.91384 1.21087 0.93497 0.99574 0.96327 0.86625 1.22028 0.99455 0.94048 0.98670 1.22412 0.98198 0.98619 0.97038 1.21007 0.84520 0.96734 0.93593 0.93445 1.48491 1.11554 1.25044 1.52665 1.18588 0.84165 0.81612 0.80812 1.90530 1.84432 1.30526 1.46995 1.21408 0.95958 1.10142 1.32785 0.89538 1.27009 1.04261 0.93219 0.94186 1.70204 1.32351 1.10565 1.32181 0.85103 0.75177 0.78975 0.79244 1.19884 1.17808 1.17661 1.21239 0.97616 0.85477 0.94545 0.94555 0.89966 0.91215 0.91085 0.91757 0.88927 0.91137 0.91581 0.88757 0.89381 0.94152 0.91672 0.92674 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.53 127.69 1.22 1.44 16 2 N -0.53 -12.02 5.66 -904.65 -5.12 -17.14 16 3 C 0.04 1.09 5.78 86.44 0.50 1.59 16 4 C -0.09 -3.09 3.29 -9.87 -0.03 -3.13 16 5 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 6 C -0.07 -1.94 3.23 -9.43 -0.03 -1.97 16 7 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 8 C 0.04 0.80 5.82 86.95 0.51 1.31 16 9 C -0.09 -2.23 2.79 -11.28 -0.03 -2.26 16 10 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 11 C -0.10 -2.54 5.39 31.46 0.17 -2.37 16 12 C -0.12 -3.91 5.66 31.56 0.18 -3.73 16 13 C 0.15 5.92 3.11 44.95 0.14 6.06 16 14 H 0.05 2.32 7.19 -2.39 -0.02 2.31 16 15 N -0.64 -30.35 2.81 -799.02 -2.25 -32.60 16 16 C 0.54 32.93 7.68 86.36 0.66 33.59 16 17 O -0.64 -44.68 14.61 -4.32 -0.06 -44.74 16 18 C -0.57 -33.13 8.96 24.83 0.22 -32.90 16 19 H 0.09 4.55 6.85 -2.92 -0.02 4.53 16 20 C 0.03 1.61 5.50 85.31 0.47 2.08 16 21 N -0.82 -51.94 11.83 21.84 0.26 -51.68 16 22 Si 1.00 41.88 29.56 68.60 2.03 43.91 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 25 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 26 C 0.13 4.92 4.71 85.65 0.40 5.32 16 27 H 0.04 0.54 7.97 -2.39 -0.02 0.53 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.60 5.06 -2.39 -0.01 1.58 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.21 5.07 -2.39 -0.01 1.20 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.70 5.76 -2.39 -0.01 1.69 16 36 H 0.09 2.29 5.67 -2.39 -0.01 2.28 16 37 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.27 15.65 8.29 -92.71 -0.77 14.88 16 39 H 0.05 2.03 8.07 -2.39 -0.02 2.01 16 40 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 Total: -1.00 -78.88 298.54 0.26 -78.62 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.03 Total: 18.60 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.38 Total: 5.02 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -7.11 Total: -101.41 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -0.06 Total: -44.74 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -78.88 0.26 -78.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708013903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.441 kcal (2) G-P(sol) polarization free energy of solvation -78.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds