Wall clock time and date at job start Mon Mar 30 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38392 * 120.00138 * 2 1 4 4 N 1.32495 * 119.17735 * 180.02562 * 3 2 1 5 5 C 1.32494 * 120.93297 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.35569 * 179.72710 * 5 4 3 7 7 C 1.52996 * 109.47355 * 94.99767 * 6 5 4 8 8 C 1.52996 * 109.46878 * 215.00223 * 6 5 4 9 9 C 1.38132 * 119.28809 * 0.02562 * 5 4 3 10 10 C 1.39642 * 118.48911 * 359.97438 * 9 5 4 11 11 N 1.38535 * 120.48232 * 179.97438 * 10 9 5 12 12 C 1.46500 * 120.00074 * 5.02386 * 11 10 9 13 13 C 1.46500 * 120.00047 * 185.02514 * 11 10 9 14 14 C 1.50693 * 109.47370 * 90.00063 * 13 11 10 15 15 H 1.08005 * 120.00215 * 0.02562 * 14 13 11 16 16 C 1.37876 * 120.00221 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00194 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00028 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47093 * 89.99870 * 18 16 14 20 20 H 1.48498 * 109.47163 * 210.00258 * 18 16 14 21 21 H 1.48500 * 109.46837 * 330.00190 * 18 16 14 22 22 N 1.32436 * 119.17838 * 359.97438 * 3 2 1 23 23 H 1.08991 * 109.47228 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46843 * 300.00195 * 1 2 3 25 25 H 1.08996 * 109.47476 * 59.99423 * 1 2 3 26 26 H 0.96998 * 119.99397 * 180.02562 * 2 1 3 27 27 H 1.09009 * 109.46839 * 334.99862 * 6 5 4 28 28 H 1.08996 * 109.47111 * 179.97438 * 7 6 5 29 29 H 1.08993 * 109.47168 * 300.00237 * 7 6 5 30 30 H 1.09004 * 109.47048 * 59.99781 * 7 6 5 31 31 H 1.08997 * 109.47655 * 59.99884 * 8 6 5 32 32 H 1.09005 * 109.46972 * 179.97438 * 8 6 5 33 33 H 1.08992 * 109.47187 * 299.99675 * 8 6 5 34 34 H 1.07999 * 120.75116 * 179.97438 * 9 5 4 35 35 H 1.08999 * 109.47077 * 89.99515 * 12 11 10 36 36 H 1.08996 * 109.47261 * 210.00008 * 12 11 10 37 37 H 1.09000 * 109.47369 * 330.00273 * 12 11 10 38 38 H 1.08998 * 109.47367 * 210.00440 * 13 11 10 39 39 H 1.09004 * 109.47122 * 330.00183 * 13 11 10 40 40 H 0.96997 * 120.00694 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1570 1.1985 0.0000 4 7 3.4818 1.1794 -0.0005 5 6 4.1792 2.3060 -0.0010 6 6 5.6857 2.2692 0.0046 7 6 6.2039 2.3784 -1.4308 8 6 6.2213 3.4402 0.8308 9 6 3.5104 3.5147 -0.0005 10 6 2.1141 3.5033 0.0000 11 7 1.4016 4.6914 0.0011 12 6 2.1088 5.9697 -0.1094 13 6 -0.0589 4.6696 0.1128 14 6 -0.4525 4.7252 1.5663 15 1 0.3091 4.7725 2.3306 16 6 -1.7849 4.7157 1.9207 17 7 -2.1284 4.7637 3.1892 18 14 -3.1024 4.6346 0.5988 19 1 -3.4255 3.2146 0.3085 20 1 -4.3237 5.3332 1.0737 21 1 -2.6050 5.2917 -0.6366 22 7 1.4785 2.3358 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.9499 -0.8401 -0.0004 27 1 6.0245 1.3303 0.4427 28 1 7.2936 2.3522 -1.4267 29 1 5.8223 1.5442 -2.0193 30 1 5.8650 3.3172 -1.8690 31 1 5.8522 3.3624 1.8534 32 1 7.3111 3.4133 0.8352 33 1 5.8825 4.3789 0.3927 34 1 4.0552 4.4472 -0.0005 35 1 2.2067 6.2411 -1.1605 36 1 1.5465 6.7425 0.4146 37 1 3.0995 5.8765 0.3354 38 1 -0.4762 5.5304 -0.4098 39 1 -0.4438 3.7524 -0.3330 40 1 -3.0657 4.7574 3.4386 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710287980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:12 Heat of formation + Delta-G solvation = 59.834383 kcal Electronic energy + Delta-G solvation = -20453.471884 eV Core-core repulsion = 17496.685710 eV Total energy + Delta-G solvation = -2956.786174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35893 -36.75708 -36.38068 -34.14614 -32.61129 -31.64377 -29.82209 -28.25169 -27.16895 -25.86895 -25.72689 -23.64673 -22.32690 -21.06607 -19.47423 -17.40978 -16.94997 -16.86850 -15.70544 -14.89823 -14.61633 -14.45990 -14.36627 -14.05831 -13.84524 -13.65876 -13.33763 -13.05429 -12.52549 -12.37163 -12.11697 -11.90359 -11.75385 -11.51725 -11.30909 -11.20483 -11.08626 -10.79824 -10.60655 -10.45973 -9.93633 -9.91180 -9.65161 -9.44023 -8.59069 -8.30576 -7.73779 -6.96593 -6.08190 -4.06265 1.93358 2.22708 3.27250 3.31961 3.35340 3.36345 3.82390 4.38905 4.59178 4.64656 4.99243 5.23376 5.25415 5.27065 5.49625 5.52821 5.59183 5.63330 5.74593 5.80882 5.89105 5.90931 5.93825 5.97371 6.00095 6.19646 6.23519 6.28595 6.31741 6.44148 6.56783 6.81949 6.98928 7.37134 7.47082 7.61496 7.91522 8.14597 8.25914 8.53781 8.96091 9.20807 9.52058 11.05340 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.006338 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.328187 B = 4416.796297 C = 5247.864696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.710 5.710 3 C 0.596 3.404 4 N -0.623 5.623 5 C 0.237 3.763 6 C -0.042 4.042 7 C -0.137 4.137 8 C -0.144 4.144 9 C -0.354 4.354 10 C 0.485 3.515 11 N -0.577 5.577 12 C 0.098 3.902 13 C 0.222 3.778 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.899 5.899 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.267 1.267 22 N -0.605 5.605 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.408 0.592 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.042 0.958 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.504 -4.343 -8.658 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.347 5.347 3 C 0.237 3.763 4 N -0.352 5.352 5 C 0.093 3.907 6 C -0.062 4.062 7 C -0.195 4.195 8 C -0.201 4.201 9 C -0.385 4.385 10 C 0.239 3.761 11 N -0.286 5.286 12 C -0.046 4.046 13 C 0.102 3.898 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.129 4.129 17 N -0.538 5.538 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.192 1.192 22 N -0.338 5.338 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.243 0.757 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.486 -4.921 -8.538 15.134 hybrid contribution -0.400 0.437 -0.392 0.710 sum 11.087 -4.483 -8.930 14.925 Atomic orbital electron populations 1.21415 0.78351 1.00860 1.02881 1.43667 1.06197 1.03780 1.81078 1.18863 0.84605 0.85962 0.86829 1.67559 1.06441 1.31424 1.29744 1.20685 0.95099 0.87258 0.87659 1.19978 0.88844 1.00298 0.97052 1.21747 1.00404 1.02236 0.95084 1.21873 1.00347 0.97836 1.00092 1.21558 0.93659 0.99883 1.23418 1.18105 0.87351 0.86020 0.84597 1.46583 1.07830 1.01444 1.72726 1.21625 0.97307 0.85416 1.00232 1.19690 0.74751 0.97454 0.97939 1.21346 0.93154 1.50796 0.90928 0.90988 1.24834 0.98299 0.94603 0.95207 1.69902 1.17336 1.50783 1.15774 0.86864 0.81645 0.78832 0.82389 1.19897 1.21207 1.19171 1.67361 1.39961 0.96502 1.30015 0.91557 0.91798 0.92735 0.75659 0.89541 0.92224 0.92476 0.92469 0.92323 0.92277 0.92052 0.84974 0.93767 0.90464 0.91874 0.95662 0.93971 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.69 10.68 59.85 0.64 2.33 16 2 N -0.71 -11.67 5.86 -69.14 -0.41 -12.08 16 3 C 0.60 11.92 8.42 -322.90 -2.72 9.20 16 4 N -0.62 -11.65 10.39 -10.24 -0.11 -11.75 16 5 C 0.24 4.02 5.82 -82.35 -0.48 3.54 16 6 C -0.04 -0.54 3.27 -91.78 -0.30 -0.84 16 7 C -0.14 -1.47 9.18 37.16 0.34 -1.13 16 8 C -0.14 -1.57 8.63 37.16 0.32 -1.25 16 9 C -0.35 -6.35 8.40 -39.10 -0.33 -6.68 16 10 C 0.49 10.37 7.39 -154.83 -1.14 9.23 16 11 N -0.58 -12.35 2.96 -182.95 -0.54 -12.89 16 12 C 0.10 1.61 10.30 59.85 0.62 2.23 16 13 C 0.22 5.43 4.30 -5.20 -0.02 5.41 16 14 C -0.52 -14.94 9.94 -34.44 -0.34 -15.28 16 15 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 16 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 18 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 22 N -0.61 -13.54 8.37 -13.17 -0.11 -13.65 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.41 5.55 8.94 -40.82 -0.37 5.18 16 27 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 34 H 0.13 2.03 4.50 -52.49 -0.24 1.79 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 37 H 0.06 0.91 6.04 -51.93 -0.31 0.60 16 38 H 0.03 0.60 7.13 -51.93 -0.37 0.23 16 39 H 0.04 1.08 6.76 -51.93 -0.35 0.73 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -33.37 327.35 -9.86 -43.23 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.21 Total: 3.62 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -3.52 Total: 8.77 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -0.39 Total: -77.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.37 -9.86 -43.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710287980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.064 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds