Wall clock time and date at job start Mon Mar 30 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00220 * 2 1 4 4 C 1.53000 * 109.47421 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47156 * 64.99851 * 4 3 2 6 6 C 1.46506 * 119.99811 * 90.00429 * 5 4 3 7 7 C 1.50703 * 109.47289 * 89.99713 * 6 5 4 8 8 H 1.07994 * 119.99399 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00144 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99733 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46632 * 90.00476 * 11 9 7 13 13 H 1.48496 * 109.46690 * 210.00029 * 11 9 7 14 14 H 1.48498 * 109.47171 * 330.00226 * 11 9 7 15 15 C 1.39670 * 119.99999 * 269.99954 * 5 4 3 16 16 C 1.38911 * 120.07735 * 359.72681 * 15 5 4 17 17 C 1.38103 * 119.92249 * 179.77049 * 16 15 5 18 18 C 1.38283 * 120.07688 * 0.50532 * 17 16 15 19 19 C 1.50705 * 119.92382 * 179.72869 * 18 17 16 20 20 N 1.46899 * 109.46678 * 270.01800 * 19 18 17 21 21 C 1.38283 * 120.14988 * 359.74243 * 18 17 16 22 22 C 1.38098 * 120.07627 * 0.02562 * 21 18 17 23 23 H 1.09000 * 109.47202 * 299.99974 * 1 2 3 24 24 H 1.09003 * 109.47320 * 59.99939 * 1 2 3 25 25 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46976 * 59.99842 * 3 2 1 27 27 H 1.09002 * 109.47112 * 300.00575 * 3 2 1 28 28 H 1.09006 * 109.46591 * 304.99606 * 4 3 2 29 29 H 1.09005 * 109.46719 * 185.00366 * 4 3 2 30 30 H 1.09001 * 109.47060 * 210.00163 * 6 5 4 31 31 H 1.09004 * 109.47073 * 329.99652 * 6 5 4 32 32 H 0.96997 * 119.99752 * 179.97438 * 10 9 7 33 33 H 1.08000 * 120.03524 * 359.97438 * 16 15 5 34 34 H 1.08003 * 119.95899 * 180.25330 * 17 16 15 35 35 H 1.08989 * 109.47440 * 30.01872 * 19 18 17 36 36 H 1.09003 * 109.47030 * 150.02370 * 19 18 17 37 37 H 1.00895 * 111.00366 * 56.04819 * 20 19 18 38 38 H 1.00903 * 111.00245 * 180.02562 * 20 19 18 39 39 H 1.08010 * 119.96331 * 180.02562 * 21 18 17 40 40 H 1.08000 * 120.04083 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2864 1.4007 -2.4147 7 6 5.7443 1.7812 -2.3844 8 1 6.3762 1.4343 -1.5803 9 6 6.2715 2.5711 -3.3839 10 7 5.5019 2.9930 -4.3635 11 14 8.0784 3.0433 -3.3460 12 1 8.8722 2.0222 -4.0758 13 1 8.2578 4.3667 -3.9952 14 1 8.5415 3.1162 -1.9369 15 6 4.0991 -0.8242 -1.3385 16 6 3.8105 -1.6182 -0.2358 17 6 3.9291 -2.9912 -0.3257 18 6 4.3448 -3.5750 -1.5083 19 6 4.4790 -5.0732 -1.6006 20 7 5.8398 -5.4677 -1.2126 21 6 4.6379 -2.7872 -2.6063 22 6 4.5169 -1.4139 -2.5249 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8514 0.5682 0.8410 29 1 3.9784 2.1766 0.0890 30 1 4.0745 0.8459 -3.3287 31 1 3.6749 2.3026 -2.3873 32 1 5.8728 3.5491 -5.0664 33 1 3.4904 -1.1626 0.6895 34 1 3.7009 -3.6094 0.5300 35 1 3.7594 -5.5444 -0.9312 36 1 4.2861 -5.3929 -2.6247 37 1 6.0662 -5.1266 -0.2905 38 1 5.9554 -6.4686 -1.2666 39 1 4.9620 -3.2464 -3.5286 40 1 4.7463 -0.7991 -3.3826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723185992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:06 Heat of formation + Delta-G solvation = -14.708317 kcal Electronic energy + Delta-G solvation = -20230.400101 eV Core-core repulsion = 17238.088762 eV Total energy + Delta-G solvation = -2992.311340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.02930 -37.61077 -35.95947 -33.81752 -32.66652 -30.53531 -29.79329 -28.70928 -26.65971 -25.86217 -23.91000 -23.29389 -21.52457 -21.19234 -19.31848 -16.90273 -16.40350 -16.20365 -15.87574 -15.38964 -15.04463 -14.66089 -14.49495 -14.12098 -13.97006 -13.54692 -13.08157 -12.75848 -12.67305 -12.28923 -11.96264 -11.80441 -11.56771 -11.48097 -11.18258 -10.98938 -10.75540 -10.60313 -10.56652 -10.20182 -9.81872 -9.72610 -9.35684 -8.78122 -8.49619 -8.46842 -8.09191 -6.38680 -5.96771 -4.14477 2.28294 2.38282 3.29252 3.35708 3.39184 4.05171 4.18698 4.43485 4.60280 5.03312 5.24309 5.33841 5.39703 5.40645 5.44616 5.54022 5.60399 5.66291 5.75330 5.77185 5.79839 5.94254 6.02339 6.21389 6.33664 6.51698 6.57144 6.76671 7.05352 7.14715 7.23704 7.31137 7.35236 7.43605 7.49888 7.59807 7.74262 7.84854 8.19621 8.36215 8.58601 8.95701 9.52611 10.98229 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.007087 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.975367 B = 3949.807995 C = 5625.421346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.040 3.960 4 C 0.129 3.871 5 N -0.608 5.608 6 C 0.251 3.749 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.062 3.938 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.248 3.752 16 C -0.193 4.193 17 C -0.076 4.076 18 C -0.173 4.173 19 C 0.117 3.883 20 N -0.847 5.847 21 C -0.058 4.058 22 C -0.189 4.189 23 H 0.033 0.967 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.022 0.978 36 H 0.069 0.931 37 H 0.340 0.660 38 H 0.332 0.668 39 H 0.109 0.891 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 -9.123 8.526 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.038 4.038 4 C 0.004 3.996 5 N -0.314 5.314 6 C 0.131 3.869 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.142 3.858 16 C -0.216 4.216 17 C -0.095 4.095 18 C -0.176 4.176 19 C -0.013 4.013 20 N -0.376 5.376 21 C -0.077 4.077 22 C -0.212 4.212 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.127 0.873 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.770 -8.500 7.722 13.330 hybrid contribution 0.260 0.194 0.678 0.752 sum -6.510 -8.306 8.400 13.488 Atomic orbital electron populations 1.22657 0.82397 1.02092 0.99273 1.88030 1.18470 1.27585 1.95221 1.23232 0.95880 0.84931 0.99738 1.21313 0.90599 0.99491 0.88240 1.46986 1.69249 1.02410 1.12719 1.19242 0.95439 0.89316 0.82881 1.21603 0.95054 1.31053 1.09153 0.92212 1.24955 0.98062 0.95804 0.95223 1.69934 1.35621 1.35754 1.12197 0.86534 0.85137 0.77775 0.78248 1.20475 1.21233 1.19908 1.17834 0.90998 0.83849 0.93091 1.20494 1.09662 0.93146 0.98264 1.20481 0.98887 0.94110 0.96065 1.19195 1.09337 0.93908 0.95137 1.20483 0.88271 0.92691 0.99818 1.58755 1.27245 1.17188 1.34454 1.20590 0.96959 0.92867 0.97301 1.20872 1.07466 0.94600 0.98231 0.94834 0.94530 0.90192 0.93543 0.93090 0.91118 0.89165 0.94700 0.95507 0.92712 0.86681 0.88088 0.95972 0.91274 0.84770 0.85601 0.87321 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.00 8.55 -35.23 -0.30 -6.30 16 3 C 0.04 0.62 6.28 37.16 0.23 0.86 16 4 C 0.13 2.25 5.72 -4.05 -0.02 2.23 16 5 N -0.61 -12.96 2.57 -173.11 -0.44 -13.40 16 6 C 0.25 6.26 4.91 -5.19 -0.03 6.24 16 7 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 11 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.25 5.19 6.30 -83.78 -0.53 4.66 16 16 C -0.19 -3.56 8.06 -39.38 -0.32 -3.88 16 17 C -0.08 -1.27 9.69 -39.61 -0.38 -1.65 16 18 C -0.17 -2.90 5.39 -104.59 -0.56 -3.46 16 19 C 0.12 1.58 6.91 -4.97 -0.03 1.55 16 20 N -0.85 -10.64 9.61 -11.41 -0.11 -10.75 16 21 C -0.06 -1.08 9.69 -39.62 -0.38 -1.47 16 22 C -0.19 -4.04 9.21 -39.38 -0.36 -4.40 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.16 6.19 -51.93 -0.32 0.84 16 29 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 30 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 31 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.12 2.01 5.53 -52.49 -0.29 1.72 16 34 H 0.10 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.02 0.27 8.08 -51.94 -0.42 -0.15 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.49 16 37 H 0.34 4.10 8.98 -39.29 -0.35 3.75 16 38 H 0.33 3.26 9.08 -39.29 -0.36 2.90 16 39 H 0.11 1.88 8.06 -52.48 -0.42 1.45 16 40 H 0.13 3.00 6.14 -52.49 -0.32 2.68 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -29.90 330.27 -8.01 -37.91 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.15 Total: 7.08 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.70 Total: -10.95 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.18 Total: -49.13 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.30 Total: -6.30 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.90 -8.01 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723185992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.197 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds