Wall clock time and date at job start Mon Mar 30 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00084 * 2 1 4 4 C 1.53006 * 109.46881 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47006 * 64.99925 * 4 3 2 6 6 C 1.46901 * 111.00084 * 66.04673 * 5 4 3 7 7 C 1.50697 * 109.47201 * 189.99820 * 6 5 4 8 8 H 1.07999 * 120.00091 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00175 * 179.97438 * 7 6 5 10 10 N 1.31525 * 119.99985 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00333 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46886 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47240 * 119.99840 * 11 9 7 14 14 H 1.48504 * 109.47175 * 240.00041 * 11 9 7 15 15 C 1.39678 * 111.00144 * 189.99601 * 5 4 3 16 16 C 1.38932 * 120.07082 * 300.00440 * 15 5 4 17 17 C 1.38088 * 119.92040 * 179.97438 * 16 15 5 18 18 C 1.38307 * 120.07549 * 0.02562 * 17 16 15 19 19 C 1.38260 * 120.15025 * 359.97438 * 18 17 16 20 20 C 1.38135 * 120.07393 * 359.74642 * 19 18 17 21 21 C 1.50699 * 120.03658 * 180.27752 * 20 19 18 22 22 N 1.46907 * 109.46954 * 260.25283 * 21 20 19 23 23 H 1.09004 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46649 * 300.00180 * 1 2 3 25 25 H 1.08996 * 109.47076 * 59.99959 * 1 2 3 26 26 H 1.08992 * 109.47198 * 60.00172 * 3 2 1 27 27 H 1.08997 * 109.46749 * 299.99934 * 3 2 1 28 28 H 1.09001 * 109.47002 * 184.99708 * 4 3 2 29 29 H 1.08993 * 109.46955 * 305.00145 * 4 3 2 30 30 H 1.09002 * 109.47434 * 309.99801 * 6 5 4 31 31 H 1.09000 * 109.47573 * 69.99317 * 6 5 4 32 32 H 0.96991 * 119.99609 * 179.97438 * 10 9 7 33 33 H 1.07998 * 120.04477 * 359.95286 * 16 15 5 34 34 H 1.07998 * 119.96142 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.92316 * 179.97438 * 18 17 16 36 36 H 1.07998 * 119.96659 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47497 * 20.25182 * 21 20 19 38 38 H 1.09001 * 109.47328 * 140.25168 * 21 20 19 39 39 H 1.00897 * 111.00074 * 56.04642 * 22 21 20 40 40 H 1.00900 * 111.00000 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 3.6970 1.4345 -2.4023 7 6 3.9334 0.6735 -3.6813 8 1 4.2601 -0.3553 -3.6450 9 6 3.7326 1.2905 -4.8979 10 7 3.3343 2.5432 -4.9421 11 14 4.0264 0.3474 -6.4833 12 1 4.4662 -1.0343 -6.1631 13 1 2.7675 0.2959 -7.2692 14 1 5.0785 1.0306 -7.2781 15 6 5.3335 0.2303 -1.1978 16 6 6.2847 1.2212 -0.9890 17 6 7.6240 0.8895 -0.9332 18 6 8.0189 -0.4272 -1.0854 19 6 7.0749 -1.4157 -1.2934 20 6 5.7331 -1.0917 -1.3445 21 6 4.7044 -2.1707 -1.5650 22 7 4.2955 -2.1765 -2.9760 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6887 1.8463 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.9786 2.1764 0.0902 29 1 3.8508 0.5684 0.8426 30 1 2.6589 1.7645 -2.3625 31 1 4.3555 2.3025 -2.3689 32 1 3.1934 2.9773 -5.7979 33 1 5.9771 2.2496 -0.8708 34 1 8.3640 1.6593 -0.7713 35 1 9.0671 -0.6837 -1.0418 36 1 7.3867 -2.4429 -1.4123 37 1 5.1327 -3.1392 -1.3069 38 1 3.8355 -1.9784 -0.9356 39 1 5.0935 -2.2887 -3.5832 40 1 3.6053 -2.8917 -3.1495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723192581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:09 Heat of formation + Delta-G solvation = 3.846537 kcal Electronic energy + Delta-G solvation = -21028.851258 eV Core-core repulsion = 18037.344518 eV Total energy + Delta-G solvation = -2991.506741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.40353 -37.44883 -35.61742 -34.13211 -32.28299 -30.12172 -29.90093 -28.33137 -26.35533 -25.40923 -24.13464 -22.65766 -22.16562 -20.37464 -19.54793 -16.75471 -16.16669 -15.70147 -15.49871 -15.19409 -14.94402 -14.50495 -14.28577 -14.16377 -13.71072 -13.50123 -13.04997 -12.71560 -12.42528 -11.98556 -11.85590 -11.71371 -11.54779 -11.28707 -11.14460 -10.77337 -10.69317 -10.50656 -10.45933 -10.11017 -9.62990 -9.14858 -8.97280 -8.27272 -8.17597 -7.83983 -7.46429 -7.16598 -5.75534 -3.67779 1.96105 2.00645 3.46143 3.52918 3.59122 4.28746 4.33307 4.63917 4.87294 5.33868 5.42291 5.50201 5.53379 5.56647 5.61658 5.65825 5.73915 5.78325 5.81144 5.88741 5.97185 5.98833 6.08073 6.19428 6.27810 6.40645 6.47482 6.72000 6.96273 7.02067 7.18693 7.30636 7.51973 7.56091 7.68377 7.90916 8.10905 8.19741 8.37541 8.49878 8.82412 9.64723 9.94379 11.38170 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.010332 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.615807 B = 2709.374448 C = 3896.470626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.370 6.370 3 C 0.068 3.932 4 C 0.060 3.940 5 N -0.488 5.488 6 C 0.196 3.804 7 C -0.495 4.495 8 H 0.125 0.875 9 C 0.042 3.958 10 N -0.918 5.918 11 Si 0.894 3.106 12 H -0.270 1.270 13 H -0.292 1.292 14 H -0.294 1.294 15 C 0.164 3.836 16 C -0.154 4.154 17 C -0.114 4.114 18 C -0.143 4.143 19 C -0.117 4.117 20 C -0.070 4.070 21 C 0.123 3.877 22 N -0.809 5.809 23 H 0.078 0.922 24 H 0.029 0.971 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.032 0.968 31 H -0.013 1.013 32 H 0.252 0.748 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.009 0.991 38 H 0.089 0.911 39 H 0.332 0.668 40 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -6.212 10.370 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.009 4.009 4 C -0.067 4.067 5 N -0.210 5.210 6 C 0.073 3.927 7 C -0.534 4.534 8 H 0.143 0.857 9 C -0.155 4.155 10 N -0.561 5.561 11 Si 0.724 3.276 12 H -0.195 1.195 13 H -0.219 1.219 14 H -0.222 1.222 15 C 0.069 3.931 16 C -0.175 4.175 17 C -0.133 4.133 18 C -0.161 4.161 19 C -0.137 4.137 20 C -0.072 4.072 21 C -0.008 4.008 22 N -0.338 5.338 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.005 0.995 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.027 0.973 38 H 0.108 0.892 39 H 0.144 0.856 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.627 -5.958 10.320 12.027 hybrid contribution 0.745 -0.013 -1.034 1.274 sum 2.372 -5.971 9.287 11.293 Atomic orbital electron populations 1.22641 0.82510 1.01958 0.99244 1.87976 1.18179 1.27497 1.95161 1.22591 0.93682 0.84979 0.99606 1.22068 0.93485 0.97415 0.93779 1.59845 1.12514 1.45995 1.02598 1.19908 0.96054 0.89681 0.87040 1.22434 1.40863 1.01759 0.88336 0.85736 1.25000 0.96673 0.94759 0.99083 1.70013 1.49810 1.11556 1.24683 0.86490 0.77034 0.80314 0.83748 1.19463 1.21898 1.22155 1.18572 0.89237 0.91872 0.93455 1.21698 0.93837 0.99546 1.02377 1.20869 0.95519 0.96031 1.00899 1.20863 0.98567 0.93241 1.03473 1.20870 0.92607 0.98649 1.01541 1.19719 0.93191 0.94258 1.00010 1.20420 0.96957 0.92147 0.91230 1.58576 1.16505 1.55070 1.03635 0.90306 0.95239 0.94188 0.94309 0.92174 0.94295 0.91419 0.95060 0.99497 0.93847 0.86899 0.87157 0.87114 0.87056 0.97330 0.89235 0.85617 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -6.69 10.65 -35.23 -0.38 -7.07 16 3 C 0.07 1.19 6.01 37.16 0.22 1.41 16 4 C 0.06 1.10 4.93 -3.82 -0.02 1.08 16 5 N -0.49 -10.48 3.57 -172.48 -0.62 -11.10 16 6 C 0.20 5.08 4.48 -4.98 -0.02 5.06 16 7 C -0.50 -13.81 8.73 -34.44 -0.30 -14.11 16 8 H 0.13 3.28 3.83 -52.49 -0.20 3.08 16 9 C 0.04 1.23 5.46 -17.81 -0.10 1.14 16 10 N -0.92 -28.09 13.29 55.43 0.74 -27.35 16 11 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 15 C 0.16 3.34 3.87 -83.79 -0.32 3.02 16 16 C -0.15 -2.98 8.58 -39.38 -0.34 -3.32 16 17 C -0.11 -1.92 10.04 -39.61 -0.40 -2.31 16 18 C -0.14 -2.24 10.04 -39.55 -0.40 -2.64 16 19 C -0.12 -1.91 9.66 -39.61 -0.38 -2.30 16 20 C -0.07 -1.31 5.24 -104.42 -0.55 -1.85 16 21 C 0.12 2.11 6.54 -4.97 -0.03 2.08 16 22 N -0.81 -14.73 6.46 -11.41 -0.07 -14.81 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.17 6.17 -51.93 -0.32 0.85 16 28 H 0.04 0.69 7.48 -51.93 -0.39 0.30 16 29 H 0.07 1.16 8.06 -51.93 -0.42 0.75 16 30 H 0.03 0.87 6.00 -51.93 -0.31 0.56 16 31 H -0.01 -0.35 7.17 -51.93 -0.37 -0.73 16 32 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.11 2.17 7.13 -52.49 -0.37 1.80 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.52 8.04 -52.49 -0.42 1.10 16 37 H 0.01 0.13 8.01 -51.93 -0.42 -0.29 16 38 H 0.09 1.68 7.80 -51.93 -0.40 1.28 16 39 H 0.33 5.90 8.91 -39.29 -0.35 5.55 16 40 H 0.33 5.25 9.08 -39.29 -0.36 4.89 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -32.12 324.07 -8.00 -40.11 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.01 Total: 8.89 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -1.52 Total: -11.15 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.05 Total: -53.25 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.38 Total: -7.07 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.12 -8.00 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723192581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.958 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds