Wall clock time and date at job start Mon Mar 30 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00084 * 2 1 4 4 C 1.53006 * 109.46881 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47006 * 64.99925 * 4 3 2 6 6 C 1.46901 * 111.00084 * 66.04673 * 5 4 3 7 7 C 1.50697 * 109.47201 * 189.99820 * 6 5 4 8 8 H 1.07999 * 120.00091 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00175 * 179.97438 * 7 6 5 10 10 N 1.31525 * 119.99985 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00333 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46886 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47240 * 119.99840 * 11 9 7 14 14 H 1.48504 * 109.47175 * 240.00041 * 11 9 7 15 15 C 1.39678 * 111.00144 * 189.99601 * 5 4 3 16 16 C 1.38932 * 120.07082 * 300.00440 * 15 5 4 17 17 C 1.38088 * 119.92040 * 179.97438 * 16 15 5 18 18 C 1.38307 * 120.07549 * 0.02562 * 17 16 15 19 19 C 1.38260 * 120.15025 * 359.97438 * 18 17 16 20 20 C 1.38135 * 120.07393 * 359.74642 * 19 18 17 21 21 C 1.50699 * 120.03658 * 180.27752 * 20 19 18 22 22 N 1.46907 * 109.46954 * 260.25283 * 21 20 19 23 23 H 1.09004 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46649 * 300.00180 * 1 2 3 25 25 H 1.08996 * 109.47076 * 59.99959 * 1 2 3 26 26 H 1.08992 * 109.47198 * 60.00172 * 3 2 1 27 27 H 1.08997 * 109.46749 * 299.99934 * 3 2 1 28 28 H 1.09001 * 109.47002 * 184.99708 * 4 3 2 29 29 H 1.08993 * 109.46955 * 305.00145 * 4 3 2 30 30 H 1.09002 * 109.47434 * 309.99801 * 6 5 4 31 31 H 1.09000 * 109.47573 * 69.99317 * 6 5 4 32 32 H 0.96991 * 119.99609 * 179.97438 * 10 9 7 33 33 H 1.07998 * 120.04477 * 359.95286 * 16 15 5 34 34 H 1.07998 * 119.96142 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.92316 * 179.97438 * 18 17 16 36 36 H 1.07998 * 119.96659 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47497 * 20.25182 * 21 20 19 38 38 H 1.09001 * 109.47328 * 140.25168 * 21 20 19 39 39 H 1.00897 * 111.00074 * 56.04642 * 22 21 20 40 40 H 1.00900 * 111.00000 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 3.6970 1.4345 -2.4023 7 6 3.9334 0.6735 -3.6813 8 1 4.2601 -0.3553 -3.6450 9 6 3.7326 1.2905 -4.8979 10 7 3.3343 2.5432 -4.9421 11 14 4.0264 0.3474 -6.4833 12 1 4.4662 -1.0343 -6.1631 13 1 2.7675 0.2959 -7.2692 14 1 5.0785 1.0306 -7.2781 15 6 5.3335 0.2303 -1.1978 16 6 6.2847 1.2212 -0.9890 17 6 7.6240 0.8895 -0.9332 18 6 8.0189 -0.4272 -1.0854 19 6 7.0749 -1.4157 -1.2934 20 6 5.7331 -1.0917 -1.3445 21 6 4.7044 -2.1707 -1.5650 22 7 4.2955 -2.1765 -2.9760 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6887 1.8463 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.9786 2.1764 0.0902 29 1 3.8508 0.5684 0.8426 30 1 2.6589 1.7645 -2.3625 31 1 4.3555 2.3025 -2.3689 32 1 3.1934 2.9773 -5.7979 33 1 5.9771 2.2496 -0.8708 34 1 8.3640 1.6593 -0.7713 35 1 9.0671 -0.6837 -1.0418 36 1 7.3867 -2.4429 -1.4123 37 1 5.1327 -3.1392 -1.3069 38 1 3.8355 -1.9784 -0.9356 39 1 5.0935 -2.2887 -3.5832 40 1 3.6053 -2.8917 -3.1495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723192581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:09 Heat of formation + Delta-G solvation = -18.604292 kcal Electronic energy + Delta-G solvation = -21029.824799 eV Core-core repulsion = 18037.344518 eV Total energy + Delta-G solvation = -2992.480282 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85617 -38.81511 -37.14195 -35.50407 -34.41909 -31.50626 -31.26813 -30.09839 -27.96851 -26.79062 -25.53047 -24.58574 -23.58835 -21.76862 -21.09388 -18.52312 -17.68951 -17.25002 -16.99607 -16.68282 -16.41290 -16.15550 -15.78217 -15.60931 -15.23683 -14.89492 -14.55913 -14.33477 -13.76450 -13.72034 -13.43922 -13.24099 -13.09040 -12.85188 -12.61327 -12.57626 -12.31791 -12.07265 -11.88299 -11.73451 -11.46862 -11.02637 -10.50399 -10.36331 -9.61368 -9.25001 -9.01163 -8.81471 -7.96560 -5.94815 0.60480 0.63217 1.45721 1.46651 1.61447 2.57312 2.96452 2.98389 3.28833 3.40082 4.05436 4.12672 4.16394 4.20458 4.28385 4.32062 4.45716 4.52876 4.54840 4.59762 4.65546 4.70394 4.82252 4.88002 4.89055 5.02861 5.09064 5.23823 5.33806 5.41965 5.63820 5.71015 5.92537 6.11179 6.16083 6.25590 6.40979 6.58946 6.67335 6.85911 6.99352 7.48794 7.71907 9.17711 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.010332 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.615807 B = 2709.374448 C = 3896.470626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.074 3.926 4 C 0.058 3.942 5 N -0.485 5.485 6 C 0.215 3.785 7 C -0.500 4.500 8 H 0.143 0.857 9 C -0.018 4.018 10 N -0.959 5.959 11 Si 0.957 3.043 12 H -0.247 1.247 13 H -0.294 1.294 14 H -0.297 1.297 15 C 0.128 3.872 16 C -0.177 4.177 17 C -0.118 4.118 18 C -0.134 4.134 19 C -0.113 4.113 20 C -0.085 4.085 21 C 0.130 3.870 22 N -0.831 5.831 23 H 0.097 0.903 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.003 0.997 31 H -0.048 1.048 32 H 0.249 0.751 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.335 0.665 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 -8.688 10.974 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.312 6.312 3 C -0.003 4.003 4 C -0.069 4.069 5 N -0.206 5.206 6 C 0.090 3.910 7 C -0.538 4.538 8 H 0.160 0.840 9 C -0.212 4.212 10 N -0.604 5.604 11 Si 0.784 3.216 12 H -0.170 1.170 13 H -0.221 1.221 14 H -0.225 1.225 15 C 0.033 3.967 16 C -0.198 4.198 17 C -0.136 4.136 18 C -0.152 4.152 19 C -0.132 4.132 20 C -0.087 4.087 21 C 0.000 4.000 22 N -0.362 5.362 23 H 0.115 0.885 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.021 0.979 31 H -0.030 1.030 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.227 -8.468 10.951 14.214 hybrid contribution 0.285 0.746 -1.107 1.365 sum 3.512 -7.722 9.843 12.994 Atomic orbital electron populations 1.22835 0.80573 1.03428 0.99910 1.87924 1.20381 1.27620 1.95310 1.22509 0.93087 0.85045 0.99670 1.22161 0.94232 0.97545 0.92968 1.59702 1.14051 1.44640 1.02225 1.19484 0.93427 0.89125 0.88923 1.23028 1.39226 1.02675 0.88914 0.83971 1.25888 0.96976 0.95604 1.02713 1.70177 1.51673 1.13384 1.25154 0.85495 0.76547 0.80074 0.79465 1.16973 1.22108 1.22461 1.18806 0.88590 0.93267 0.96016 1.21741 0.95323 0.98750 1.03949 1.21194 0.94705 0.97682 1.00058 1.21326 1.00470 0.92291 1.01137 1.21265 0.91508 1.00547 0.99905 1.19980 0.94776 0.93646 1.00251 1.20321 0.96078 0.93279 0.90304 1.58420 1.17226 1.56150 1.04411 0.88488 0.92634 0.95397 0.90924 0.95276 0.94316 0.89948 0.97896 1.03030 0.94213 0.88555 0.84783 0.83293 0.83698 0.93998 0.91379 0.85273 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.39 -14.24 10.65 -148.98 -1.59 -15.83 16 3 C 0.07 2.63 6.01 71.98 0.43 3.06 16 4 C 0.06 2.19 4.93 86.31 0.43 2.62 16 5 N -0.49 -21.44 3.57 -699.59 -2.50 -23.94 16 6 C 0.21 11.70 4.48 85.56 0.38 12.08 16 7 C -0.50 -28.45 8.73 25.60 0.22 -28.22 16 8 H 0.14 7.45 3.83 -2.91 -0.01 7.44 16 9 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 10 N -0.96 -60.87 13.29 21.45 0.28 -60.59 16 11 Si 0.96 46.69 29.54 68.60 2.03 48.72 16 12 H -0.25 -10.96 7.11 99.48 0.71 -10.26 16 13 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 14 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 15 C 0.13 5.23 3.87 38.21 0.15 5.38 16 16 C -0.18 -6.91 8.58 22.40 0.19 -6.72 16 17 C -0.12 -3.72 10.04 22.25 0.22 -3.49 16 18 C -0.13 -3.69 10.04 22.29 0.22 -3.46 16 19 C -0.11 -3.27 9.66 22.25 0.22 -3.05 16 20 C -0.09 -3.01 5.24 -19.74 -0.10 -3.11 16 21 C 0.13 4.23 6.54 85.56 0.56 4.79 16 22 N -0.83 -28.80 6.46 -190.00 -1.23 -30.03 16 23 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.03 1.21 6.17 -2.39 -0.01 1.20 16 28 H 0.04 1.45 7.48 -2.39 -0.02 1.43 16 29 H 0.08 2.84 8.06 -2.39 -0.02 2.82 16 30 H 0.00 0.19 6.00 -2.39 -0.01 0.17 16 31 H -0.05 -2.88 7.17 -2.39 -0.02 -2.90 16 32 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.10 3.93 7.13 -2.91 -0.02 3.91 16 34 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 36 H 0.15 3.18 8.04 -2.91 -0.02 3.16 16 37 H 0.04 1.09 8.01 -2.39 -0.02 1.07 16 38 H 0.07 2.50 7.80 -2.39 -0.02 2.48 16 39 H 0.33 11.08 8.91 -89.70 -0.80 10.28 16 40 H 0.34 10.25 9.08 -89.69 -0.81 9.43 16 Total: -1.00 -71.57 324.07 1.07 -70.51 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.56 Total: 29.87 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.63 Total: -18.72 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -3.44 Total: -114.55 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.59 Total: -15.83 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -71.57 1.07 -70.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723192581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.903 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds