Wall clock time and date at job start Mon Mar 30 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48505 * 109.47159 * 269.99960 * 3 2 1 5 5 H 1.48497 * 109.46975 * 29.99907 * 3 2 1 6 6 H 1.48502 * 109.47142 * 150.00124 * 3 2 1 7 7 C 1.37878 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00023 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.52992 * 115.55164 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47146 * 34.33201 * 10 9 7 12 12 C 1.46945 * 111.00126 * 46.16850 * 11 10 9 13 13 C 1.52979 * 109.78484 * 185.33108 * 12 11 10 14 14 C 1.53327 * 109.48955 * 301.37836 * 13 12 11 15 15 C 1.53000 * 108.82141 * 57.46341 * 14 13 12 16 16 H 1.09002 * 109.49034 * 61.43873 * 15 14 13 17 17 C 1.52899 * 110.18281 * 181.91424 * 15 14 13 18 18 N 1.46794 * 109.33437 * 179.27784 * 17 15 14 19 19 C 1.46791 * 111.46731 * 298.60259 * 18 17 15 20 20 C 1.53117 * 109.76431 * 61.17192 * 19 18 17 21 21 C 1.46721 * 110.99925 * 170.00030 * 11 10 9 22 22 H 1.09003 * 109.45199 * 293.64225 * 21 11 10 23 23 C 1.53008 * 117.51728 * 325.70284 * 9 7 2 24 24 C 1.53000 * 117.49627 * 34.32963 * 9 7 2 25 25 H 0.96998 * 120.00223 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47395 * 274.32864 * 10 9 7 27 27 H 1.09006 * 109.47163 * 154.32775 * 10 9 7 28 28 H 1.09000 * 109.41829 * 305.43301 * 12 11 10 29 29 H 1.09000 * 109.41840 * 65.23973 * 12 11 10 30 30 H 1.09008 * 109.46649 * 61.42222 * 13 12 11 31 31 H 1.08999 * 109.46398 * 181.40371 * 13 12 11 32 32 H 1.09001 * 109.65217 * 297.63169 * 14 13 12 33 33 H 1.09003 * 109.55358 * 177.23542 * 14 13 12 34 34 H 1.08996 * 109.50371 * 299.28905 * 17 15 14 35 35 H 1.09005 * 109.50533 * 59.41768 * 17 15 14 36 36 H 1.00905 * 110.96021 * 62.86500 * 18 17 15 37 37 H 1.09002 * 109.41823 * 301.08077 * 19 18 17 38 38 H 1.09002 * 109.37382 * 181.23175 * 19 18 17 39 39 H 1.09000 * 109.54472 * 181.24032 * 20 19 18 40 40 H 1.08995 * 109.54392 * 60.97120 * 20 19 18 41 41 H 1.09000 * 117.49950 * 214.97132 * 23 9 7 42 42 H 1.09005 * 117.49658 * 359.97438 * 23 9 7 43 43 H 1.09000 * 117.50392 * 359.97438 * 24 9 7 44 44 H 1.09004 * 117.49710 * 144.99816 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1165 -3.7608 -0.0018 11 7 3.3372 -3.5180 0.7785 12 6 3.0243 -2.8605 2.0549 13 6 4.3205 -2.5016 2.7839 14 6 5.1412 -3.7742 3.0246 15 6 5.4129 -4.4484 1.6783 16 1 5.9917 -3.7759 1.0451 17 6 6.1904 -5.7483 1.8866 18 7 6.4256 -6.3877 0.5864 19 6 5.1634 -6.7326 -0.0789 20 6 4.3489 -5.4616 -0.3351 21 6 4.0767 -4.7657 0.9998 22 1 3.4918 -5.4256 1.6406 23 6 -0.0729 -2.5511 0.7646 24 6 -0.0730 -2.5504 -0.7654 25 1 -0.4850 0.8400 -0.0004 26 1 2.3852 -4.0161 -1.0268 27 1 1.5586 -4.5846 0.4435 28 1 2.4524 -1.9525 1.8641 29 1 2.4347 -3.5355 2.6752 30 1 4.8984 -1.8055 2.1760 31 1 4.0823 -2.0370 3.7407 32 1 4.5826 -4.4545 3.6675 33 1 6.0870 -3.5139 3.5000 34 1 7.1459 -5.5285 2.3628 35 1 5.6126 -6.4202 2.5214 36 1 6.9980 -5.8036 -0.0048 37 1 4.5911 -7.4078 0.5574 38 1 5.3773 -7.2236 -1.0282 39 1 3.4031 -5.7239 -0.8091 40 1 4.9117 -4.7931 -0.9866 41 1 -0.3274 -3.4840 1.2676 42 1 -0.3990 -1.6411 1.2685 43 1 -0.3994 -1.6401 -1.2683 44 1 -0.3275 -3.4830 -1.2691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715013046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:58 Heat of formation + Delta-G solvation = 31.418112 kcal Electronic energy + Delta-G solvation = -21779.884381 eV Core-core repulsion = 18925.406328 eV Total energy + Delta-G solvation = -2854.478053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89276 -37.20982 -35.47681 -33.38135 -31.48814 -30.43255 -29.65899 -26.20396 -25.47980 -23.84783 -22.98890 -21.40057 -20.72480 -20.24639 -19.40292 -18.71425 -16.11746 -15.85062 -15.04722 -14.99667 -14.83713 -14.38351 -14.00357 -13.68911 -13.47647 -13.00436 -12.76417 -12.41661 -12.20902 -11.90427 -11.80844 -11.62418 -11.24794 -11.10548 -11.00608 -10.90935 -10.57463 -10.45910 -10.34920 -10.24102 -10.06495 -9.85510 -9.60589 -9.33381 -8.66454 -8.39093 -8.23756 -8.01767 -7.42696 -5.92936 -3.94069 3.29964 3.37579 3.41192 4.28877 4.41825 4.52821 4.89695 4.98235 5.06848 5.11124 5.29888 5.39857 5.50340 5.52775 5.70292 5.72972 5.83784 5.85586 5.94126 5.96473 6.00762 6.11431 6.15687 6.22552 6.31254 6.34228 6.43416 6.50356 6.54269 6.61513 6.73345 6.85885 7.01770 7.04241 7.16485 7.31509 7.31669 7.36309 7.70308 7.91445 8.03042 8.12876 8.23400 8.59160 9.04943 9.58062 11.03171 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.006539 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.225386 B = 4281.137321 C = 4804.100474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.076 0.924 9 C 0.018 3.982 10 C 0.104 3.896 11 N -0.511 5.511 12 C 0.044 3.956 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.114 4.114 16 H 0.076 0.924 17 C 0.063 3.937 18 N -0.689 5.689 19 C 0.059 3.941 20 C -0.151 4.151 21 C 0.090 3.910 22 H 0.027 0.973 23 C -0.192 4.192 24 C -0.188 4.188 25 H 0.257 0.743 26 H 0.060 0.940 27 H 0.007 0.993 28 H 0.131 0.869 29 H 0.009 0.991 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.340 0.660 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.036 0.964 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.169 -9.169 3.174 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.017 3.983 10 C -0.023 4.023 11 N -0.234 5.234 12 C -0.083 4.083 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.134 4.134 16 H 0.094 0.906 17 C -0.067 4.067 18 N -0.316 5.316 19 C -0.071 4.071 20 C -0.190 4.190 21 C -0.019 4.019 22 H 0.045 0.955 23 C -0.230 4.230 24 C -0.227 4.227 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.025 0.975 28 H 0.148 0.852 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.412 -9.360 3.177 13.649 hybrid contribution -0.701 1.196 0.158 1.395 sum 8.711 -8.164 3.335 12.396 Atomic orbital electron populations 1.70029 1.05792 1.25819 1.50492 1.25072 0.94912 0.99198 0.95653 0.86570 0.79870 0.83409 0.78047 1.20882 1.21525 1.19762 1.20664 0.93475 0.87898 1.47145 0.90592 1.19048 0.85603 0.92864 1.00776 1.21587 0.88759 0.95797 0.96197 1.61888 1.22344 1.20694 1.18520 1.22510 0.95870 1.01936 0.87961 1.21604 0.97302 0.96740 0.99643 1.21582 0.99605 0.97638 0.96087 1.21900 0.96723 0.97416 0.97409 0.90566 1.22035 0.99553 0.93483 0.91604 1.60623 1.16908 1.48413 1.05659 1.22012 0.89897 0.96352 0.98852 1.22345 1.01343 0.97497 0.97864 1.21557 0.94288 0.91186 0.94876 0.95512 1.22904 1.06237 0.99421 0.94466 1.22810 1.05799 0.99665 0.94387 0.93285 0.92168 0.97466 0.85171 0.97268 0.91436 0.92380 0.92784 0.92523 0.90894 0.91382 0.84291 0.91392 0.90876 0.91371 0.91073 0.94545 0.87304 0.87162 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.10 8.59 55.43 0.48 -23.62 16 2 C 0.05 1.38 5.28 -17.82 -0.09 1.29 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.45 -11.79 6.41 -34.44 -0.22 -12.02 16 8 H 0.08 2.00 6.99 -52.49 -0.37 1.63 16 9 C 0.02 0.43 1.43 -155.66 -0.22 0.20 16 10 C 0.10 2.17 4.51 -3.83 -0.02 2.15 16 11 N -0.51 -9.77 3.90 -226.67 -0.88 -10.65 16 12 C 0.04 0.86 4.61 -3.81 -0.02 0.85 16 13 C -0.11 -1.88 6.09 -26.57 -0.16 -2.05 16 14 C -0.11 -1.52 5.35 -26.56 -0.14 -1.66 16 15 C -0.11 -1.56 2.24 -90.58 -0.20 -1.77 16 16 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 17 C 0.06 0.74 5.89 -3.93 -0.02 0.71 16 18 N -0.69 -7.89 6.85 -113.93 -0.78 -8.67 16 19 C 0.06 0.69 6.55 -3.82 -0.03 0.67 16 20 C -0.15 -2.11 4.92 -26.68 -0.13 -2.24 16 21 C 0.09 1.42 1.66 -67.73 -0.11 1.31 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 C -0.19 -4.74 9.29 -26.73 -0.25 -4.99 16 24 C -0.19 -4.67 9.38 -26.73 -0.25 -4.92 16 25 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 27 H 0.01 0.15 7.84 -51.93 -0.41 -0.26 16 28 H 0.13 3.00 4.69 -51.93 -0.24 2.76 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.34 3.62 8.87 -39.29 -0.35 3.27 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.99 6.75 -51.93 -0.35 0.64 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 42 H 0.11 2.94 6.29 -51.93 -0.33 2.62 16 43 H 0.11 3.01 6.28 -51.93 -0.33 2.68 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -26.33 320.64 -11.02 -37.35 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.78 Total: 7.40 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -1.87 Total: -22.46 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -1.19 Total: -42.94 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.33 -11.02 -37.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715013046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.769 kcal (2) G-P(sol) polarization free energy of solvation -26.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds