Wall clock time and date at job start Mon Mar 30 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48505 * 109.47159 * 269.99960 * 3 2 1 5 5 H 1.48497 * 109.46975 * 29.99907 * 3 2 1 6 6 H 1.48502 * 109.47142 * 150.00124 * 3 2 1 7 7 C 1.37878 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00023 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.52992 * 115.55164 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47146 * 34.33201 * 10 9 7 12 12 C 1.46945 * 111.00126 * 46.16850 * 11 10 9 13 13 C 1.52979 * 109.78484 * 185.33108 * 12 11 10 14 14 C 1.53327 * 109.48955 * 301.37836 * 13 12 11 15 15 C 1.53000 * 108.82141 * 57.46341 * 14 13 12 16 16 H 1.09002 * 109.49034 * 61.43873 * 15 14 13 17 17 C 1.52899 * 110.18281 * 181.91424 * 15 14 13 18 18 N 1.46794 * 109.33437 * 179.27784 * 17 15 14 19 19 C 1.46791 * 111.46731 * 298.60259 * 18 17 15 20 20 C 1.53117 * 109.76431 * 61.17192 * 19 18 17 21 21 C 1.46721 * 110.99925 * 170.00030 * 11 10 9 22 22 H 1.09003 * 109.45199 * 293.64225 * 21 11 10 23 23 C 1.53008 * 117.51728 * 325.70284 * 9 7 2 24 24 C 1.53000 * 117.49627 * 34.32963 * 9 7 2 25 25 H 0.96998 * 120.00223 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47395 * 274.32864 * 10 9 7 27 27 H 1.09006 * 109.47163 * 154.32775 * 10 9 7 28 28 H 1.09000 * 109.41829 * 305.43301 * 12 11 10 29 29 H 1.09000 * 109.41840 * 65.23973 * 12 11 10 30 30 H 1.09008 * 109.46649 * 61.42222 * 13 12 11 31 31 H 1.08999 * 109.46398 * 181.40371 * 13 12 11 32 32 H 1.09001 * 109.65217 * 297.63169 * 14 13 12 33 33 H 1.09003 * 109.55358 * 177.23542 * 14 13 12 34 34 H 1.08996 * 109.50371 * 299.28905 * 17 15 14 35 35 H 1.09005 * 109.50533 * 59.41768 * 17 15 14 36 36 H 1.00905 * 110.96021 * 62.86500 * 18 17 15 37 37 H 1.09002 * 109.41823 * 301.08077 * 19 18 17 38 38 H 1.09002 * 109.37382 * 181.23175 * 19 18 17 39 39 H 1.09000 * 109.54472 * 181.24032 * 20 19 18 40 40 H 1.08995 * 109.54392 * 60.97120 * 20 19 18 41 41 H 1.09000 * 117.49950 * 214.97132 * 23 9 7 42 42 H 1.09005 * 117.49658 * 359.97438 * 23 9 7 43 43 H 1.09000 * 117.50392 * 359.97438 * 24 9 7 44 44 H 1.09004 * 117.49710 * 144.99816 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1165 -3.7608 -0.0018 11 7 3.3372 -3.5180 0.7785 12 6 3.0243 -2.8605 2.0549 13 6 4.3205 -2.5016 2.7839 14 6 5.1412 -3.7742 3.0246 15 6 5.4129 -4.4484 1.6783 16 1 5.9917 -3.7759 1.0451 17 6 6.1904 -5.7483 1.8866 18 7 6.4256 -6.3877 0.5864 19 6 5.1634 -6.7326 -0.0789 20 6 4.3489 -5.4616 -0.3351 21 6 4.0767 -4.7657 0.9998 22 1 3.4918 -5.4256 1.6406 23 6 -0.0729 -2.5511 0.7646 24 6 -0.0730 -2.5504 -0.7654 25 1 -0.4850 0.8400 -0.0004 26 1 2.3852 -4.0161 -1.0268 27 1 1.5586 -4.5846 0.4435 28 1 2.4524 -1.9525 1.8641 29 1 2.4347 -3.5355 2.6752 30 1 4.8984 -1.8055 2.1760 31 1 4.0823 -2.0370 3.7407 32 1 4.5826 -4.4545 3.6675 33 1 6.0870 -3.5139 3.5000 34 1 7.1459 -5.5285 2.3628 35 1 5.6126 -6.4202 2.5214 36 1 6.9980 -5.8036 -0.0048 37 1 4.5911 -7.4078 0.5574 38 1 5.3773 -7.2236 -1.0282 39 1 3.4031 -5.7239 -0.8091 40 1 4.9117 -4.7931 -0.9866 41 1 -0.3274 -3.4840 1.2676 42 1 -0.3990 -1.6411 1.2685 43 1 -0.3994 -1.6401 -1.2683 44 1 -0.3275 -3.4830 -1.2691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715013046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:57 Heat of formation + Delta-G solvation = 15.880417 kcal Electronic energy + Delta-G solvation = -21780.558146 eV Core-core repulsion = 18925.406328 eV Total energy + Delta-G solvation = -2855.151818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15848 -38.84835 -36.87225 -34.74909 -33.45120 -31.66045 -30.82601 -27.98664 -27.23114 -25.08077 -24.14372 -22.72752 -22.68062 -21.43182 -20.70446 -20.56328 -17.99691 -17.06184 -16.81317 -16.35539 -15.96848 -15.80222 -15.34722 -15.19549 -14.97798 -14.48836 -14.18538 -13.76922 -13.64036 -13.33613 -13.12526 -12.94897 -12.88362 -12.66905 -12.49252 -12.32251 -12.17428 -12.10804 -11.96755 -11.70485 -11.56021 -11.45826 -11.16053 -10.87037 -10.60175 -10.28971 -10.00900 -9.27089 -8.96639 -7.96423 -6.01972 1.41695 1.44615 1.53676 2.45734 3.00799 3.12495 3.45636 3.76001 3.85757 3.90625 3.97236 4.16267 4.27876 4.32791 4.37962 4.47003 4.51451 4.58177 4.61451 4.66153 4.72628 4.81662 4.89679 4.90774 4.96843 5.01013 5.03484 5.11361 5.13817 5.21371 5.25289 5.26441 5.34766 5.40251 5.53616 5.62460 5.69554 5.96934 6.08653 6.17034 6.33345 6.48889 6.55659 6.64238 6.99346 7.51660 8.98178 Molecular weight = 264.19amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.006539 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.225386 B = 4281.137321 C = 4804.100474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.949 3.051 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.456 4.456 8 H 0.069 0.931 9 C 0.015 3.985 10 C 0.114 3.886 11 N -0.520 5.520 12 C 0.049 3.951 13 C -0.112 4.112 14 C -0.105 4.105 15 C -0.107 4.107 16 H 0.067 0.933 17 C 0.071 3.929 18 N -0.686 5.686 19 C 0.067 3.933 20 C -0.146 4.146 21 C 0.088 3.912 22 H 0.019 0.981 23 C -0.189 4.189 24 C -0.192 4.192 25 H 0.254 0.746 26 H 0.063 0.937 27 H 0.008 0.992 28 H 0.092 0.908 29 H 0.002 0.998 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.346 0.654 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.368 -10.460 3.656 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.494 4.494 8 H 0.087 0.913 9 C 0.014 3.986 10 C -0.014 4.014 11 N -0.243 5.243 12 C -0.078 4.078 13 C -0.150 4.150 14 C -0.143 4.143 15 C -0.128 4.128 16 H 0.085 0.915 17 C -0.059 4.059 18 N -0.314 5.314 19 C -0.063 4.063 20 C -0.185 4.185 21 C -0.021 4.021 22 H 0.037 0.963 23 C -0.227 4.227 24 C -0.230 4.230 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.026 0.974 28 H 0.110 0.890 29 H 0.020 0.980 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.629 -10.659 3.658 16.194 hybrid contribution -1.415 1.591 0.010 2.129 sum 10.215 -9.068 3.668 14.143 Atomic orbital electron populations 1.70173 1.06821 1.26097 1.51416 1.25703 0.95607 1.01965 0.95790 0.85676 0.78880 0.80006 0.77791 1.20888 1.21613 1.19158 1.20780 0.93191 0.88874 1.46562 0.91289 1.19192 0.85715 0.93861 0.99787 1.21408 0.89159 0.93962 0.96853 1.61894 1.21421 1.22765 1.18241 1.22313 0.97134 0.99999 0.88392 1.21561 0.95907 0.98124 0.99368 1.21547 1.00283 0.96088 0.96348 1.21878 0.95434 0.98553 0.96918 0.91497 1.22009 1.00064 0.92010 0.91827 1.60639 1.16579 1.48436 1.05754 1.21976 0.89602 0.94978 0.99779 1.22316 1.01289 0.98378 0.96532 1.21698 0.94766 0.89542 0.96096 0.96297 1.22723 1.06937 0.98805 0.94251 1.22716 1.06595 0.99400 0.94304 0.93652 0.91865 0.97365 0.89038 0.98004 0.92652 0.91393 0.92292 0.89978 0.88956 0.91326 0.83563 0.91329 0.89221 0.92229 0.91870 0.93071 0.89974 0.89821 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.82 8.59 21.45 0.18 -50.64 16 2 C 0.01 0.40 5.28 84.65 0.45 0.84 16 3 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.46 -24.11 6.41 25.60 0.16 -23.94 16 8 H 0.07 3.68 6.99 -2.91 -0.02 3.66 16 9 C 0.02 0.74 1.43 -52.93 -0.08 0.66 16 10 C 0.11 4.73 4.51 86.30 0.39 5.12 16 11 N -0.52 -19.66 3.90 -871.05 -3.40 -23.06 16 12 C 0.05 1.92 4.61 86.29 0.40 2.32 16 13 C -0.11 -3.53 6.09 30.70 0.19 -3.35 16 14 C -0.10 -2.59 5.35 30.70 0.16 -2.42 16 15 C -0.11 -2.68 2.24 -10.77 -0.02 -2.70 16 16 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 17 C 0.07 1.41 5.89 86.29 0.51 1.92 16 18 N -0.69 -13.48 6.85 -514.36 -3.52 -17.00 16 19 C 0.07 1.38 6.55 86.36 0.57 1.95 16 20 C -0.15 -3.83 4.92 30.63 0.15 -3.68 16 21 C 0.09 2.63 1.66 45.00 0.07 2.71 16 22 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 23 C -0.19 -9.50 9.29 30.60 0.28 -9.22 16 24 C -0.19 -9.64 9.38 30.59 0.29 -9.35 16 25 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.06 2.57 6.95 -2.39 -0.02 2.56 16 27 H 0.01 0.34 7.84 -2.38 -0.02 0.32 16 28 H 0.09 4.32 4.69 -2.39 -0.01 4.31 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.35 6.25 8.87 -89.69 -0.80 5.46 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.66 6.75 -2.39 -0.02 1.64 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 2.37 8.05 -2.39 -0.02 2.35 16 42 H 0.08 4.60 6.29 -2.38 -0.01 4.58 16 43 H 0.08 4.69 6.28 -2.39 -0.01 4.67 16 44 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -56.94 320.64 -1.02 -57.96 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.17 Total: 26.43 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 3.52 Total: -39.14 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -6.73 Total: -90.69 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -56.94 -1.02 -57.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715013046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.839 kcal (2) G-P(sol) polarization free energy of solvation -56.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds