Wall clock time and date at job start Mon Mar 30 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46497 * 119.99865 * 2 1 4 4 C 1.50696 * 109.47221 * 270.00085 * 3 2 1 5 5 H 1.08001 * 119.99837 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00199 * 180.28108 * 4 3 2 7 7 N 1.31519 * 120.00151 * 359.72304 * 6 4 3 8 8 Si 1.86807 * 120.00510 * 179.72422 * 6 4 3 9 9 H 1.48501 * 109.46858 * 89.99453 * 8 6 4 10 10 H 1.48494 * 109.47070 * 209.99818 * 8 6 4 11 11 H 1.48502 * 109.46372 * 329.99672 * 8 6 4 12 12 C 1.34772 * 119.99689 * 180.02562 * 2 1 3 13 13 O 1.21277 * 119.99756 * 174.78403 * 12 2 1 14 14 C 1.50696 * 120.00133 * 354.78095 * 12 2 1 15 15 C 1.52998 * 115.55196 * 79.29056 * 14 12 2 16 16 C 1.53009 * 117.49883 * 293.62071 * 14 12 2 17 17 C 1.53003 * 117.50037 * 224.99863 * 14 12 2 18 18 Cl 1.80298 * 117.50093 * 214.97854 * 17 14 12 19 19 Cl 1.80299 * 117.49766 * 0.02562 * 17 14 12 20 20 H 1.08993 * 109.46932 * 95.34340 * 1 2 3 21 21 H 1.08999 * 109.47110 * 215.34600 * 1 2 3 22 22 H 1.09002 * 109.46735 * 335.34739 * 1 2 3 23 23 H 1.09002 * 109.46567 * 150.00045 * 3 2 1 24 24 H 1.08997 * 109.47131 * 30.00252 * 3 2 1 25 25 H 0.96999 * 120.00067 * 180.02562 * 7 6 4 26 26 H 1.09009 * 109.46956 * 60.81329 * 15 14 12 27 27 H 1.09006 * 109.47516 * 180.80956 * 15 14 12 28 28 H 1.09002 * 109.47351 * 300.81498 * 15 14 12 29 29 H 1.08995 * 117.49621 * 359.97438 * 16 14 12 30 30 H 1.08998 * 117.49724 * 144.99928 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1315 2.8747 -1.6727 7 7 3.5589 3.6149 -0.6731 8 14 3.4496 3.4102 -3.4339 9 1 2.3239 4.2565 -3.9049 10 1 4.7129 4.1883 -3.4942 11 1 3.5647 2.2112 -4.3025 12 6 2.1389 -1.1672 -0.0005 13 8 3.3479 -1.1693 -0.0960 14 6 1.3901 -2.4696 0.1176 15 6 0.7336 -2.9725 -1.1696 16 6 0.6670 -2.7517 1.4362 17 6 1.9439 -3.5178 1.0848 18 17 1.7735 -5.2516 0.6204 19 17 3.4423 -3.0999 1.9965 20 1 -0.3633 -0.0957 -1.0231 21 1 -0.3633 -0.8382 0.5945 22 1 -0.3633 0.9340 0.4287 23 1 3.1500 1.1383 0.5139 24 1 1.6085 2.0283 0.5139 25 1 4.0389 4.4389 -0.8504 26 1 1.4997 -3.1398 -1.9268 27 1 0.2104 -3.9076 -0.9694 28 1 0.0231 -2.2285 -1.5299 29 1 0.7333 -1.9955 2.2183 30 1 -0.2763 -3.2956 1.3866 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073491995.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:04 Heat of formation + Delta-G solvation = -38.179985 kcal Electronic energy + Delta-G solvation = -16366.214103 eV Core-core repulsion = 13441.776419 eV Total energy + Delta-G solvation = -2924.437684 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 265.038 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24492 -38.50273 -37.03906 -36.60357 -36.52514 -34.62784 -30.15083 -29.47640 -27.44550 -25.65930 -23.51962 -22.83264 -19.67170 -18.69132 -17.95573 -17.26151 -16.88584 -16.38699 -15.87418 -15.22175 -14.57904 -14.39562 -14.19607 -13.93962 -13.53575 -13.44208 -13.38820 -13.08202 -13.04931 -12.82196 -12.53589 -12.48440 -12.21569 -12.16910 -11.88127 -11.71727 -11.43136 -10.86166 -10.62901 -10.46201 -9.41874 -8.21839 -6.35870 0.12744 1.09764 1.36272 1.39587 1.49328 1.70583 1.94511 2.32268 2.45245 2.99405 3.08097 3.21536 3.62248 3.98673 4.45001 4.48423 4.61757 4.69733 4.74650 4.76608 4.96255 5.03752 5.17428 5.22819 5.57053 5.83723 6.06548 6.68691 6.76345 7.28094 7.44602 8.85063 Molecular weight = 265.04amu Principal moments of inertia in cm(-1) A = 0.031444 B = 0.005639 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.245344 B = 4964.388578 C = 5134.803300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.600 5.600 3 C 0.262 3.738 4 C -0.539 4.539 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.275 1.275 12 C 0.528 3.472 13 O -0.570 6.570 14 C -0.126 4.126 15 C -0.111 4.111 16 C -0.098 4.098 17 C 0.012 3.988 18 Cl -0.079 7.079 19 Cl -0.106 7.106 20 H 0.061 0.939 21 H 0.098 0.902 22 H 0.074 0.926 23 H -0.004 1.004 24 H 0.029 0.971 25 H 0.267 0.733 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 -14.983 3.478 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.331 5.331 3 C 0.141 3.859 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.789 3.211 9 H -0.186 1.186 10 H -0.208 1.208 11 H -0.199 1.199 12 C 0.315 3.685 13 O -0.448 6.448 14 C -0.130 4.130 15 C -0.168 4.168 16 C -0.135 4.135 17 C -0.040 4.040 18 Cl -0.052 7.052 19 Cl -0.079 7.079 20 H 0.080 0.920 21 H 0.116 0.884 22 H 0.092 0.908 23 H 0.014 0.986 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.145 0.855 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.288 -14.899 3.515 19.020 hybrid contribution 1.036 0.578 -0.703 1.379 sum -10.251 -14.322 2.812 17.836 Atomic orbital electron populations 1.22037 0.77718 1.04106 1.02703 1.48036 1.08437 1.05747 1.70887 1.18797 0.91072 0.80074 0.95978 1.21687 1.36496 1.06490 0.93126 0.92941 1.25821 0.94971 0.96530 1.01753 1.70044 1.38962 1.14922 1.32932 0.85459 0.78073 0.78177 0.79370 1.18647 1.20818 1.19947 1.19767 0.86989 0.84747 0.77019 1.90708 1.16187 1.87311 1.50643 1.22285 1.01308 0.92223 0.97224 1.21465 1.00454 1.03096 0.91802 1.24449 0.94650 0.99259 0.95187 1.26940 0.90495 0.83658 1.02951 1.98723 1.97023 1.16879 1.92547 1.98776 1.40667 1.92663 1.75773 0.92017 0.88352 0.90756 0.98568 0.95332 0.92455 0.92612 0.87912 0.89030 0.85484 0.80858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 9.63 127.77 1.23 3.30 16 2 N -0.60 -24.38 2.86 -851.15 -2.43 -26.81 16 3 C 0.26 13.87 5.16 85.63 0.44 14.31 16 4 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.47 5.46 84.65 0.46 0.93 16 7 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 8 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 9 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.53 21.36 6.42 87.66 0.56 21.92 16 13 O -0.57 -29.44 15.09 -3.02 -0.05 -29.48 16 14 C -0.13 -3.41 1.44 -52.93 -0.08 -3.49 16 15 C -0.11 -2.37 9.15 71.98 0.66 -1.71 16 16 C -0.10 -1.81 7.79 30.60 0.24 -1.57 16 17 C 0.01 0.30 3.59 30.60 0.11 0.41 16 18 Cl -0.08 -1.73 27.69 -2.72 -0.08 -1.80 16 19 Cl -0.11 -3.52 27.19 -2.72 -0.07 -3.60 16 20 H 0.06 1.56 7.67 -2.39 -0.02 1.54 16 21 H 0.10 1.81 5.49 -2.39 -0.01 1.80 16 22 H 0.07 1.99 7.83 -2.39 -0.02 1.97 16 23 H 0.00 -0.23 7.50 -2.39 -0.02 -0.25 16 24 H 0.03 1.52 7.86 -2.39 -0.02 1.50 16 25 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 26 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.10 1.55 7.07 -2.38 -0.02 1.54 16 28 H 0.09 1.71 7.03 -2.39 -0.02 1.70 16 29 H 0.13 2.35 8.13 -2.39 -0.02 2.33 16 30 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -74.24 285.99 4.70 -69.54 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: 1.15 Total: -2.53 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 3.87 Total: 3.49 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.15 Total: -82.62 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.05 Total: -29.48 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: -5.25 SS G_CDS: -0.15 Total: -5.40 kcal Total: -74.24 4.70 -69.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073491995.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.356 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds