Wall clock time and date at job start Mon Mar 30 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47082 * 290.48333 * 3 2 1 5 5 C 1.32645 * 120.00015 * 264.28269 * 4 3 2 6 6 H 1.07999 * 119.99495 * 207.87100 * 5 4 3 7 7 C 1.46797 * 120.00079 * 27.86446 * 5 4 3 8 8 N 1.29331 * 119.99954 * 355.01100 * 7 5 4 9 9 Si 1.86796 * 120.00070 * 175.00900 * 7 5 4 10 10 H 1.48500 * 109.47167 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47177 * 120.00550 * 9 7 5 12 12 H 1.48506 * 109.47091 * 240.00637 * 9 7 5 13 13 C 1.39253 * 119.99724 * 84.28366 * 4 3 2 14 14 C 1.39087 * 120.07421 * 176.78501 * 13 4 3 15 15 C 1.38237 * 119.88141 * 179.97438 * 14 13 4 16 16 F 1.35098 * 119.98085 * 179.97438 * 15 14 13 17 17 C 1.38591 * 120.04514 * 0.02562 * 15 14 13 18 18 C 1.38280 * 120.15285 * 0.02562 * 17 15 14 19 19 N 1.48009 * 119.94129 * 179.97438 * 18 17 15 20 20 O 1.31695 * 119.99979 * 359.97438 * 19 18 17 21 21 O 1.31706 * 120.00052 * 179.97438 * 19 18 17 22 22 C 1.38077 * 120.11395 * 359.97438 * 18 17 15 23 23 H 1.08997 * 109.46727 * 170.48405 * 3 2 1 24 24 H 1.09004 * 109.47147 * 50.48729 * 3 2 1 25 25 H 0.96998 * 119.99661 * 179.97438 * 8 7 5 26 26 H 1.07998 * 120.05561 * 0.25529 * 14 13 4 27 27 H 1.07996 * 119.92338 * 179.97438 * 17 15 14 28 28 H 1.08006 * 120.01523 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.4825 1.2939 5 6 3.4252 0.3830 2.2439 6 1 4.1692 0.1190 2.9808 7 6 2.7775 1.6994 2.2935 8 7 1.9587 2.0529 1.3569 9 14 3.1361 2.8640 3.7093 10 1 4.1000 2.2270 4.6422 11 1 3.7190 4.1228 3.1793 12 1 1.8748 3.1682 4.4316 13 6 3.2160 -1.8502 1.5264 14 6 3.7423 -2.3095 2.7291 15 6 3.8586 -3.6681 2.9559 16 9 4.3700 -4.1164 4.1232 17 6 3.4518 -4.5708 1.9861 18 6 2.9293 -4.1161 0.7894 19 7 2.4969 -5.0842 -0.2433 20 8 2.6104 -6.3775 -0.0221 21 8 1.9985 -4.6524 -1.3834 22 6 2.8103 -2.7604 0.5560 23 1 2.9708 1.0143 -0.1699 24 1 2.9717 -0.6530 -0.7928 25 1 1.5305 2.9227 1.3899 26 1 4.0554 -1.6059 3.4863 27 1 3.5439 -5.6318 2.1652 28 1 2.4023 -2.4069 -0.3795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157928559.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:32 Heat of formation + Delta-G solvation = 44.381147 kcal Electronic energy + Delta-G solvation = -19265.286088 eV Core-core repulsion = 15814.984655 eV Total energy + Delta-G solvation = -3450.301433 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.065 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.92095 -41.22679 -39.89236 -38.03394 -36.67618 -35.54818 -34.48548 -32.46652 -30.85611 -29.70307 -27.49946 -25.99583 -23.31644 -22.76569 -20.38104 -19.86616 -19.15999 -18.41607 -17.88623 -17.21047 -17.10433 -16.88046 -16.83962 -16.49495 -16.12171 -15.63403 -14.77749 -14.60780 -14.22158 -13.88013 -13.42412 -13.40033 -13.26120 -13.03658 -12.80377 -12.50287 -12.45083 -12.28045 -12.21544 -12.03974 -11.87517 -11.57112 -10.93812 -10.09404 -9.08980 -8.74545 -5.81648 -1.76938 0.09810 0.17886 0.30647 1.41976 1.47494 1.57406 1.72936 2.10183 2.20973 2.36609 2.77483 2.84946 3.21552 3.41487 3.83691 3.93744 4.05810 4.10234 4.29626 4.44404 4.70653 4.79119 4.85408 4.99190 5.10055 5.22770 5.53890 5.72605 5.80665 6.29374 6.82926 6.90713 7.39503 8.22724 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.007035 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.739391 B = 3979.313567 C = 5152.400360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.254 3.746 3 C 0.213 3.787 4 N -0.391 5.391 5 C -0.364 4.364 6 H 0.124 0.876 7 C 0.021 3.979 8 N -0.843 5.843 9 Si 0.994 3.006 10 H -0.251 1.251 11 H -0.269 1.269 12 H -0.289 1.289 13 C 0.186 3.814 14 C -0.208 4.208 15 C 0.170 3.830 16 F -0.131 7.131 17 C -0.234 4.234 18 C 0.071 3.929 19 N -0.009 5.009 20 O -0.187 6.187 21 O -0.205 6.205 22 C -0.160 4.160 23 H 0.146 0.854 24 H 0.124 0.876 25 H 0.292 0.708 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 -0.223 1.891 6.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.064 4.064 3 C 0.087 3.913 4 N -0.070 5.070 5 C -0.493 4.493 6 H 0.141 0.859 7 C -0.193 4.193 8 N -0.472 5.472 9 Si 0.817 3.183 10 H -0.174 1.174 11 H -0.194 1.194 12 H -0.215 1.215 13 C 0.065 3.935 14 C -0.235 4.235 15 C 0.149 3.851 16 F -0.110 7.110 17 C -0.259 4.259 18 C -0.017 4.017 19 N 0.465 4.535 20 O -0.381 6.381 21 O -0.393 6.393 22 C -0.185 4.185 23 H 0.163 0.837 24 H 0.142 0.858 25 H 0.104 0.896 26 H 0.171 0.829 27 H 0.171 0.829 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.798 0.768 2.165 5.320 hybrid contribution 0.069 0.266 0.330 0.430 sum 4.868 1.034 2.495 5.567 Atomic orbital electron populations 1.80959 1.14862 1.12713 1.09937 1.29729 0.95779 0.89639 0.91215 1.19355 0.80219 1.05142 0.86567 1.41347 1.53121 1.00888 1.11649 1.20898 1.22590 0.95049 1.10721 0.85896 1.27787 0.92920 0.99476 0.99105 1.68812 1.23499 1.22544 1.32354 0.84807 0.78332 0.77438 0.77734 1.17359 1.19411 1.21491 1.17228 0.99431 0.84067 0.92772 1.20648 1.09867 0.93748 0.99197 1.16647 0.96062 0.91057 0.81343 1.91492 1.84385 1.89873 1.45221 1.20038 1.11422 1.01600 0.92887 1.19464 1.07200 0.86699 0.88301 1.50670 0.96430 1.03589 1.02779 1.96202 1.61305 0.93923 1.86648 1.96237 1.47983 1.84180 1.10908 1.20288 1.06694 0.89448 1.02108 0.83682 0.85842 0.89567 0.82924 0.82909 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.49 18.54 20.01 0.37 -22.12 15 2 C 0.25 10.09 13.14 89.44 1.17 11.27 15 3 C 0.21 7.10 4.78 84.57 0.40 7.50 15 4 N -0.39 -14.19 2.60 -516.99 -1.34 -15.53 15 5 C -0.36 -13.69 9.15 86.81 0.79 -12.90 15 6 H 0.12 4.38 6.26 -2.91 -0.02 4.36 15 7 C 0.02 0.80 5.51 87.30 0.48 1.28 15 8 N -0.84 -33.71 8.85 23.26 0.21 -33.50 15 9 Si 0.99 31.14 29.65 68.60 2.03 33.17 15 10 H -0.25 -7.49 7.11 99.48 0.71 -6.78 15 11 H -0.27 -8.23 7.11 99.48 0.71 -7.53 15 12 H -0.29 -9.73 7.11 99.48 0.71 -9.02 15 13 C 0.19 6.55 6.45 38.37 0.25 6.79 15 14 C -0.21 -6.94 9.23 22.47 0.21 -6.73 15 15 C 0.17 5.47 7.30 22.35 0.16 5.63 15 16 F -0.13 -3.99 17.27 44.97 0.78 -3.21 15 17 C -0.23 -7.74 9.56 22.36 0.21 -7.53 15 18 C 0.07 2.53 6.88 36.35 0.25 2.78 15 19 N -0.01 -0.34 4.98 -46.54 -0.23 -0.57 15 20 O -0.19 -7.17 19.14 3.52 0.07 -7.10 15 21 O -0.21 -8.14 19.15 3.50 0.07 -8.08 15 22 C -0.16 -5.61 8.58 22.44 0.19 -5.42 15 23 H 0.15 4.83 6.39 -2.39 -0.02 4.82 15 24 H 0.12 3.26 6.66 -2.39 -0.02 3.25 15 25 H 0.29 11.30 8.26 -92.71 -0.77 10.53 15 26 H 0.15 4.84 6.21 -2.91 -0.02 4.82 15 27 H 0.15 4.69 7.57 -2.91 -0.02 4.66 15 28 H 0.15 4.90 5.65 -2.91 -0.02 4.88 15 Total: -1.00 -47.59 269.06 7.33 -40.27 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.25 Total: 13.99 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.13 Total: 2.68 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.00 Total: -71.72 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.13 Total: -15.18 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 31.14 SS G_CDS: 2.03 Total: 33.17 kcal Total: -47.59 7.33 -40.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157928559.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.649 kcal (2) G-P(sol) polarization free energy of solvation -47.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds