Wall clock time and date at job start Mon Mar 30 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46945 * 2 1 4 4 C 1.53244 * 109.46435 * 240.01253 * 2 1 3 5 5 H 1.09002 * 109.57506 * 177.86056 * 4 2 1 6 6 C 1.52998 * 109.58465 * 57.58819 * 4 2 1 7 7 S 1.81738 * 108.79674 * 297.65034 * 4 2 1 8 8 C 1.81739 * 102.30808 * 305.45869 * 7 4 2 9 9 C 1.53246 * 108.79470 * 54.54420 * 8 7 4 10 10 N 1.46370 * 109.48570 * 302.33971 * 9 8 7 11 11 S 1.65603 * 119.64974 * 245.10854 * 10 9 8 12 12 O 1.42097 * 106.40445 * 203.54220 * 11 10 9 13 13 O 1.42101 * 106.39850 * 336.46632 * 11 10 9 14 14 C 1.76196 * 107.21492 * 90.00068 * 11 10 9 15 15 H 1.08000 * 120.00636 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00002 * 180.02562 * 14 11 10 17 17 N 1.31524 * 119.99781 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00384 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47006 * 60.00240 * 18 16 14 20 20 H 1.48502 * 109.47365 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47091 * 300.00325 * 18 16 14 22 22 H 1.09008 * 109.47318 * 300.00837 * 1 2 3 23 23 H 1.09004 * 109.47078 * 60.00198 * 1 2 3 24 24 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47314 * 59.99343 * 6 4 2 26 26 H 1.08992 * 109.46897 * 179.97438 * 6 4 2 27 27 H 1.09000 * 109.46523 * 299.99623 * 6 4 2 28 28 H 1.09000 * 109.58873 * 294.74942 * 8 7 4 29 29 H 1.09000 * 109.58567 * 174.33283 * 8 7 4 30 30 H 1.09005 * 109.46655 * 62.34678 * 9 8 7 31 31 H 1.09004 * 109.46707 * 182.33578 * 9 8 7 32 32 H 0.96998 * 119.99723 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2514 5 1 3.1300 -0.6901 -1.2726 6 6 1.4830 -0.0385 -2.5015 7 16 1.4829 -2.4510 -1.1984 8 6 2.1018 -3.0083 0.4170 9 6 1.5849 -2.0547 1.4995 10 7 2.0178 -0.6900 1.1952 11 16 3.0712 0.0816 2.2138 12 8 2.8793 1.4746 2.0094 13 8 2.9337 -0.5441 3.4822 14 6 4.7010 -0.2838 1.6529 15 1 4.8459 -0.9118 0.7862 16 6 5.7917 0.2319 2.3204 17 7 5.6153 0.9971 3.3755 18 14 7.5196 -0.1548 1.7254 19 1 7.6855 0.3365 0.3339 20 1 8.5085 0.5154 2.6076 21 1 7.7384 -1.6231 1.7614 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8105 1.0008 -2.5239 26 1 1.8477 -0.5533 -3.3903 27 1 0.3939 -0.0759 -2.4807 28 1 3.1918 -3.0004 0.4133 29 1 1.7425 -4.0177 0.6175 30 1 0.4959 -2.0928 1.5272 31 1 1.9837 -2.3548 2.4685 32 1 6.3826 1.3596 3.8454 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160088803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:02 Heat of formation + Delta-G solvation = -96.240643 kcal Electronic energy + Delta-G solvation = -17488.975877 eV Core-core repulsion = 14701.941002 eV Total energy + Delta-G solvation = -2787.034875 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.059 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -37.77169 -35.45874 -34.05388 -33.50684 -33.12088 -29.93348 -28.21075 -26.19780 -24.90665 -22.34174 -20.15508 -18.80483 -17.79998 -16.57698 -15.72906 -15.51667 -14.98153 -14.55654 -14.30585 -14.15054 -13.74514 -13.41071 -12.76610 -12.60522 -12.09588 -12.07234 -11.97290 -11.47345 -11.40768 -11.26474 -11.24588 -10.75326 -10.67916 -10.66444 -10.37971 -10.33724 -10.07857 -9.45184 -9.29591 -9.04121 -8.48151 -7.33620 -6.75771 -5.39234 1.99483 2.17541 2.77645 3.03980 3.08819 3.14001 3.98595 4.33349 4.57978 4.88125 5.13572 5.23073 5.32726 5.38823 5.51007 5.60737 5.69423 5.79039 5.83044 5.94487 5.99040 6.07540 6.10278 6.19835 6.28740 6.38108 6.53116 6.72551 7.25803 7.48000 7.88832 8.82488 10.17862 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.008748 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.719780 B = 3200.045751 C = 3473.249924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.112 0.888 4 C -0.063 4.063 5 H 0.096 0.904 6 C -0.133 4.133 7 S -0.271 6.271 8 C -0.098 4.098 9 C 0.121 3.879 10 N -1.009 6.009 11 S 2.711 3.289 12 O -1.001 7.001 13 O -1.002 7.002 14 C -1.020 5.020 15 H 0.100 0.900 16 C 0.134 3.866 17 N -0.845 5.845 18 Si 0.919 3.081 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 -4.733 -8.457 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.129 0.871 4 C -0.194 4.194 5 H 0.114 0.886 6 C -0.192 4.192 7 S -0.045 6.045 8 C -0.248 4.248 9 C -0.007 4.007 10 N -0.842 5.842 11 S 2.812 3.188 12 O -0.992 6.992 13 O -0.992 6.992 14 C -1.154 5.154 15 H 0.118 0.882 16 C -0.084 4.084 17 N -0.474 5.474 18 Si 0.743 3.257 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.188 1.188 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.385 -4.682 -8.313 12.065 hybrid contribution 2.178 0.080 0.186 2.187 sum -5.207 -4.602 -8.127 10.693 Atomic orbital electron populations 1.22206 0.94695 1.03291 1.01880 1.20880 0.95209 0.96690 0.83094 0.87066 1.23663 1.03658 0.93130 0.98904 0.88602 1.21665 1.01780 1.00480 0.95248 1.86351 1.76893 1.14408 1.26815 1.23897 1.04580 1.02077 0.94220 1.21282 1.00241 0.81176 0.98016 1.58075 1.63564 1.23889 1.38694 1.00661 0.74064 0.72218 0.71837 1.93349 1.87409 1.32544 1.85881 1.93351 1.87859 1.77495 1.40523 1.30556 1.14077 1.44916 1.25810 0.88210 1.24740 1.01411 0.90273 0.91994 1.69886 1.34749 1.26772 1.16013 0.86218 0.80264 0.79637 0.79589 1.18829 1.20044 1.18831 0.92322 0.91679 0.90881 0.90833 0.91934 0.91311 0.89041 0.87469 0.90743 0.87704 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.37 37.16 0.31 -2.00 16 2 C 0.15 2.57 2.73 -67.87 -0.19 2.39 16 3 H 0.11 2.07 6.80 -51.93 -0.35 1.72 16 4 C -0.06 -0.96 3.07 -26.61 -0.08 -1.05 16 5 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 6 C -0.13 -1.60 8.81 37.16 0.33 -1.27 16 7 S -0.27 -3.99 20.29 -107.50 -2.18 -6.17 16 8 C -0.10 -1.45 6.67 37.28 0.25 -1.20 16 9 C 0.12 2.03 5.83 -3.98 -0.02 2.00 16 10 N -1.01 -19.95 2.87 -107.21 -0.31 -20.26 16 11 S 2.71 70.39 4.96 -107.50 -0.53 69.86 16 12 O -1.00 -28.54 16.51 -57.17 -0.94 -29.48 16 13 O -1.00 -28.53 16.50 -57.17 -0.94 -29.47 16 14 C -1.02 -27.41 9.75 30.60 0.30 -27.11 16 15 H 0.10 2.46 7.81 -52.49 -0.41 2.05 16 16 C 0.13 3.68 5.46 -17.81 -0.10 3.58 16 17 N -0.84 -24.53 13.19 55.43 0.73 -23.80 16 18 Si 0.92 20.33 29.54 -169.99 -5.02 15.31 16 19 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 22 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 23 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 24 H 0.07 1.00 5.84 -51.93 -0.30 0.70 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.76 6.40 -51.93 -0.33 0.43 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.09 6.92 -51.93 -0.36 0.73 16 31 H 0.10 1.86 6.80 -51.93 -0.35 1.51 16 32 H 0.29 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 280.00 15.07 4.22 4.22 Total: -1.00 -32.98 280.00 -8.30 -41.28 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.11 Total: 3.16 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 0.80 Total: -24.66 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.42 Total: -44.05 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -1.89 Total: -58.95 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 66.41 SS G_CDS: -2.71 Total: 63.69 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.98 -8.30 -41.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160088803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.960 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds